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检索条件"机构=Center for Computational and Data-Intensive Science and Engineering"
716 条 记 录,以下是631-640 订阅
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Signed iterative random forests to identify enhancer-associated transcription factor binding
arXiv
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arXiv 2018年
作者: Kumbier, Karl Basu, Sumanta Frise, Erwin Celniker, Susan E. Brown, James B. Yu, Bin University of California San Francisco Department of Pharmaceutical Chemistry San Francisco94158 United States Cornell University Department of Statistics and Data Science Ithaca14853 United States Lawrence Berkeley National Biological Systems and Engineering Division Berkeley94720 United States Lawrence Berkeley National Laboratory Division of Environmental Genomics and Systems Biology Berkeley94720 United States University of California Berkeley Department of Statistics Berkeley94720 United States University of California Berkeley Department of Electrical Engineering and Computer Science Berkeley94720 United States University of California Berkeley Center for Computational Biology Berkeley94720 United States
Standard ChIP-seq peak calling pipelines seek to differentiate biochemically reproducible signals of individual genomic elements from background noise. However, reproducibility alone does not imply functional regulati... 详细信息
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Global burden of 369 diseases and injuries in 204 countries and territories, 1990–2019: a systematic analysis for the Global Burden of Disease Study 2019
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The Lancet 2020年 第10258期396卷 1204-1222页
作者: Abbafati, Cristiana Abbas, Kaja M. Abbasi, Mohammad Abbasifard, Mitra Abbasi-Kangevari, Mohsen Abbastabar, Hedayat Abd-Allah, Foad Abdelalim, Ahmed Abdollahi, Mohammad Abdollahpour, Ibrahim Abedi, Aidin Abedi, Parisa Abegaz, Kedir Hussein Abolhassani, Hassan Abosetugn, Akine Eshete Aboyans, Victor Abrams, Elissa M. Abreu, Lucas Guimarães Abrigo, Michael R.M. Abu Haimed, Abdulaziz Khalid Abualhasan, Ahmed Abu-Gharbieh, Eman Abu-Raddad, Laith Jamal Abushouk, Abdelrahman I. Acebedo, Alyssa Ackerman, Ilana N. Adabi, Maryam Adair, Tim Adamu, Abdu A. Adebayo, Oladimeji M. Adedeji, Isaac Akinkunmi Adekanmbi, Victor Adelson, Jaimie D. Adeoye, Abiodun Moshood Adetokunboh, Olatunji O. Adham, Davoud Advani, Shailesh M. Afarideh, Mohsen Afshari, Mahdi Afshin, Ashkan Agardh, Emilie E. Agarwal, Gina Agasthi, Pradyumna Agesa, Kareha M. Aghaali, Mohammad Aghamir, Seyed Mohammad Kazem Agrawal, Anurag Ahmad, Tauseef Ahmadi, Alireza Ahmadi, Keivan Ahmadi, Mehdi Ahmadieh, Hamid Ahmadpour, Ehsan Ahmed, Muktar Beshir Aji, Budi Akalu, Temesgen Yihunie Akinyemi, Rufus Olusola Akinyemiju, Tomi Akombi, Blessing Akunna, Chisom Joyqueenet Alahdab, Fares Al-Aly, Ziyad Alam, Khurshid Alam, Noore Alam, Samiah Alam, Tahiya Alanezi, Fahad Mashhour Alanzi, Turki M. Albertson, Samuel B. Alcalde-Rabanal, Jacqueline Elizabeth Alema, Niguse Meles Alemu, Biresaw Wassihun Alemu, Yihun Mulugeta Alhabib, Khalid F. Alhassan, Robert Kaba Ali, Muhammad Ali, Saqib Alicandro, Gianfranco Alijanzadeh, Mehran Alinia, Cyrus Alipour, Vahid Alizade, Hesam Aljunid, Syed Mohamed Alla, François Allebeck, Peter Almadi, Majid Abdulrahman Hamad Almasi, Ali Almasi-Hashiani, Amir Almasri, Nihad A. Al-Mekhlafi, Hesham M. Almulhim, Abdulaziz M. Alonso, Jordi Al-Raddadi, Rajaa M. Altirkawi, Khalid A. Alumran, Arwa Khalid Alvis-Guzman, Nelson Alvis-Zakzuk, Nelson J. Amare, Azmeraw T. Amare, Bekalu Amini, Saeed Amini-Rarani, Mostafa Aminorroaya, Arya Amiri, Fatemeh Amit, Arianna Maever L. Amugsi, Dickson A. Amul, Gianna Gayle Herrera Anbesu, Etsay Woldu Ancuceanu, Robert Anderl Department of Juridical and Economic Studies La Sapienza University Rome Italy Department of Infectious Disease Epidemiology London School of Hygiene and Tropical Medicine London United Kingdom Social Determinants of Health Research Center Tehran Iran Department of Neurology Cairo University Cairo Egypt School of Pharmacy Tehran Iran The Institute of Pharmaceutical Sciences (TIPS) Tehran Iran Neuroscience Research Center Isfahan University of Medical Sciences Isfahan Iran Biostatistics Department Near East University Nicosia Cyprus Biostatistics and Health Informatics Madda Walabu University Bale Robe Ethiopia Research Center for Immunodeficiencies Tehran Iran Karolinska University Hospital Huddinge Sweden Department of Cardiology Dupuytren University Hospital Limoges France University of Limoges Limoges France Department of Pediatric Dentistry Federal University of Minas Gerais Belo Horizonte Brazil Department of Research Philippine Institute for Development Studies Quezon City Philippines Department of Healthcare Policy and Research Weill Cornell Medical College in Qatar Doha Qatar Harvard Medical School Boston MA United States Department of Medicine Ain Shams University Cairo Egypt Hamadan University of Medical Sciences Hamadan Iran School of Medicine Cardiff University Cardiff United Kingdom School of Laboratory Medicine and Science University College Hospital Ibadan Ibadan Nigeria Institute of Cardiovascular Diseases University of Ibadan Ibadan Nigeria Centre of Excellence for Epidemiological Modelling and Analysis Stellenbosch University Cape Town South Africa Department of Global Health Stellenbosch University Cape Town South Africa School of Health Ardabil University of Medical Science Ardabil Iran Social Behavioral Research Branch National Institute of Health Bethesda MD United States Department of Oncology Georgetown University Washington DC DC United States Department of Health Metrics Sciences School of Medicine Seattle WA
Background: In an era of shifting global agendas and expanded emphasis on non-communicable diseases and injuries along with communicable diseases, sound evidence on trends by cause at the national level is essential. ...
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Low-density star cluster formation: discovery of a young faint fuzzy on the outskirts of the low-mass spiral galaxy NGC 247
arXiv
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arXiv 2022年
作者: Romanowsky, Aaron J. Larsen, Søren S. Villaume, Alexa Carlin, Jeffrey L. Janz, Joachim Sand, David J. Strader, Jay Brodie, Jean P. Chakrabarti, Sukanya Cheng, Chloe M. Crnojević, Denija Forbes, Duncan A. Garling, Christopher T. Hargis, Jonathan R. Karunakaran, Ananthan Martín-Navarro, Ignacio Olsen, Knut A.G. Rider, Nicole Salimkumar, Bitha Santhanakrishnan, Vakini Spekkens, Kristine Tang, Yimeng van Dokkum, Pieter G. Willman, Beth Department of Physics & Astronomy San José State University One Washington Square San JoseCA95192 United States University of California Observatories 1156 High Street Santa CruzCA95064 United States Department of Astronomy & Astrophysics University of California Santa Cruz 1156 High Street Santa CruzCA95064 United States Department of Astrophysics IMAPP Radboud University PO Box 9010 Nijmegen6500 GL Netherlands Waterloo Centre for Astrophysics Department of Physics & Astronomy University of Waterloo 200 University Ave. W. WaterlooONN2L 3G1 Canada Rubin Observatory Project Office 950 N. Cherry Ave. TucsonAZ85719 United States University of Turku Vesilinnantie 5 FI-20014 Finland Space Physics and Astronomy Research Unit University of Oulu P.O. Box 3000 Yliopisto OulunFI-90014 Finland Specim Spectral Imaging Ltd. Elektroniikkatie 13 OuluFI-90590 Finland Steward Observatory University of Arizona 933 North Cherry Avenue TucsonAZ85721 United States Center for Data Intensive and Time Domain Astronomy Department of Physics and Astronomy Michigan State University East LansingMI48824 United States Centre for Astrophysics and Supercomputing Swinburne University John Street HawthornVIC3122 Australia School of Physics and Astronomy RIT RochesterNY14623 United States Institute for Advanced Study 1 Einstein Drive PrincetonNJ08540 United States University of Tampa 401 West Kennedy Boulevard TampaFL33606 United States CCAPP Department of Astronomy The Ohio State University 140 W. 18th Ave. ColumbusOH43210 United States Space Telescope Science Institute 3700 San Martin Drive BaltimoreMD21218 United States Department of Physics Engineering Physics and Astronomy Queen’s University KingstonONK7L 3N6 Canada Instituto de Astrofísica de Canarias Tenerife La LagunaE-38205 Spain Departamento de Astrofísica Universidad de La Laguna Tenerife La LagunaE-38205 Spain NSF’s National Optical-Infrared Astronomy Research Laboratory 950
The classical globular clusters found in all galaxy types have half-light radii of rh ∼ 2–4 pc, which have been tied to formation in the dense cores of giant molecular clouds. Some old star clusters have larger size... 详细信息
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Catalytic ativities of single-atom catalysts for CO oxidation: Pt_1/FeO_x vs. Fe_1/FeO_x
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Chinese Journal of Catalysis 2017年 第9期38卷 1566-1573页
作者: Jinxia Liang Xiaofeng Yang Congqiao Xu Tao Zhang Jun Li Guizhou Provincial Key Laboratory of Computational Nano‐Material Science Guizhou Synergetic Innovation Center of Scientific Big Data for Advanced Manufacturing Technology Guizhou Education University Guiyang 550018 Guizhou China Department of Chemistry and Key Laboratory of Organic Optoelectronics & Molecular Engineering of Ministry of Education Tsinghua University Beijing 100084 China State Key Laboratory of Catalysis Dalian Institute of Chemical Physics Chinese Academy of Sciences Dalian 116023 Liaoning China
An FeOx‐based Pt single‐atom catalyst(SAC),Pt1/FeOx,has stimulated significant recent interest owing to its extraordinary activity toward CO *** concept of SAC has also been successfully extended to other FeOx suppo... 详细信息
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Machine learning clustering technique applied to powder X-ray diffraction patterns to distinguish alloy substitutions
arXiv
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arXiv 2018年
作者: Utimula, Keishu Hunkao, Rutchapon Yano, Masao Kimoto, Hiroyuki Hongo, Kenta Kawaguchi, Shogo Suwanna, Sujin Maezono, Ryo School of Materials Science JAIST Asahidai 1-1 Nomi Ishikawa923-1292 Japan Optical and Quantum Physics Laboratory Department of Physics faculty of Science Mahidol University Bangkok10400 Thailand Advanced Material Engineering Div. Toyota Motor Corporation Toyota-cho 1 Toyota Aichi471-8572 Japan Research Center for Advanced Computing Infrastructure JAIST Asahidai 1-1 Nomi Ishikawa923-1292 Japan Center for Materials Research by Information Integration Research and Services Division of Materials Data and Integrated System National Institute for Materials Science Tsukuba305-0047 Japan PRESTO JST Kawaguchi Saitama332-0012 Japan Sayo-gun Hyogo679-5148 Japan Asahidai 1-1 Nomi Ishikawa923-1292 Japan Computational Engineering Applications Unit RIKEN 2-1 Hirosawa Wako Saitama351-0198 Japan
We applied the clustering technique using DTW (dynamic time wrapping) analysis to XRD (X-ray diffraction) spectrum patterns in order to identify the microscopic structures of substituents introduced in the main phase ... 详细信息
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Extortion provides alternative routes to the evolution of cooperation in structured populations
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Physical Review E 2017年 第5期95卷 052302-052302页
作者: Xiongrui Xu Zhihai Rong Zhi-Xi Wu Tao Zhou Chi Kong Tse CompleX Lab Web Sciences Center University of Electronic Science and Technology of China Chengdu 611731 China Big Data Research Center University of Electronic Science and Technology of China Chengdu 611731 China Department of Electronic and Information Engineering The Hong Kong Polytechnic University Hung Hom Kowloon Hong Kong Institute of Computational Physics and Complex Systems Lanzhou University Lanzhou Gansu 730000 People's Republic of China
In this paper, we study the evolution of cooperation in structured populations (individuals are located on either a regular lattice or a scale-free network) in the context of repeated games by involving three types of... 详细信息
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Detecting spatial patterns of disease in large collections of electronic medical records using neighbor-based bootstrapping (NB2)
arXiv
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arXiv 2017年
作者: Patterson, Maria T. Grossman, Robert L. Center for Data Intensive Science University of Chicago ChicagoIL United States Department of Astronomy University of Washington SeattleWA United States Computation Institute University of Chicago ChicagoIL United States Section of Computational Biomedicine and Biomedical Data Science Department of Medicine University of Chicago ChicagoIL United States Institute for Genomics and Systems Biology University of Chicago ChicagoIL United States University of Washington
We introduce a method called neighbor-based bootstrapping (NB2) that can be used to quantify the geospatial variation of a variable. We applied this method to an analysis of the incidence rates of disease from electro... 详细信息
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Author Correction: Community-wide hackathons to identify central themes in single-cell multi-omics
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Genome biology 2021年 第1期22卷 246页
作者: Kim-Anh Lê Cao Al J Abadi Emily F Davis-Marcisak Lauren Hsu Arshi Arora Alexis Coullomb Atul Deshpande Yuzhou Feng Pratheepa Jeganathan Melanie Loth Chen Meng Wancen Mu Vera Pancaldi Kris Sankaran Dario Righelli Amrit Singh Joshua S Sodicoff Genevieve L Stein-O'Brien Ayshwarya Subramanian Joshua D Welch Yue You Ricard Argelaguet Vincent J Carey Ruben Dries Casey S Greene Susan Holmes Michael I Love Matthew E Ritchie Guo-Cheng Yuan Aedin C Culhane Elana Fertig Melbourne Integrative Genomics School of Mathematics and Statistics University of Melbourne Melbourne Australia. kimanh.lecao@nimelb.edu.au. Melbourne Integrative Genomics School of Mathematics and Statistics University of Melbourne Melbourne Australia. McKusick-Nathans Institute of the Department of Genetic Medicine Johns Hopkins School of Medicine Baltimore MD USA. Data Science Dana-Farber Cancer Institute Boston MA USA. Biostatistics Harvard TH Chan School of Public Health Boston MA USA. Department of Epidemiology and Biostatistics Memorial Sloan Kettering Cancer Center New York NY USA. Centre de Recherches en Cancérologie de Toulouse (INSERM) Université Paul Sabatier III Toulouse France. Cancer Convergence Institute and Division of Quantitative Sciences Department of Oncology Sidney Kimmel Comprehensive Cancer Center Johns Hopkins University School of Medicine Baltimore MD USA. Department of Mathematics and Statistics McMaster University Hamilton Canada. Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS) School of Life Sciences Technical University of Munich Munich Germany. Department of Biostatistics UNC Chapel Hill NC USA. Barcelona Supercomputing Center Barcelona Spain. Department of Statistics University of Wisconsin Madison WI USA. Department of Statistical Sciences University of Padova Padova PD Italy. Department of Pathology and Laboratory Medicine University of British Columbia Vancouver BC Canada. PROOF Centre of Excellence Vancouver BC Canada. Department of Computational Medicine and Bioinformatics University of Michigan Ann Arbor MI USA. Department of Biomedical Engineering University of Michigan Ann Arbor MI USA. Department of Neuroscience Johns Hopkins University Baltimore MD USA. Kavli Neuroscience Discovery Institute Johns Hopkins University Baltimore MD USA. Klarman Cell Observatory Broad Institute of MIT and Harvard Cambridge MA USA. Department of Computer Science and Engineering University of Michiga
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Deep learning for multi-messenger astrophysics a gateway for discovery in the big data era
arXiv
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arXiv 2019年
作者: Allen, Gabrielle Andreoni, Igor Bachelet, Etienne Bruce Berriman, G. Bianco, Federica B. Biswas, Rahul Kind, Matias Carrasco Chard, Kyle Cho, Minsik Cowperthwaite, Philip S. Etienne, Zachariah B. George, Daniel Gibbs, Tom Graham, Matthew Gropp, William Gupta, Anushri Haas, Roland Huerta, E.A. Jennings, Elise Katz, Daniel S. Khan, Asad Kindratenko, Volodymyr Kramer, William T.C. Liu, Xin Mahabal, Ashish McHenry, Kenton Miller, J.M. Neubauer, M.S. Oberlin, Steve Olivas, Alexander R. Rosofsky, Shawn Ruiz, Milton Saxton, Aaron Schutz, Bernard Schwing, Alex Seidel, Ed Shapiro, Stuart L. Shen, Hongyu Shen, Yue Sipocz, Brigitta M. Sun, Lunan Towns, John Tsokaros, Antonios Wei, Wei Wells, Jack Williams, Timothy J. Xiong, Jinjun Zhao, Zhizhen NCSA University of Illinois at Urbana-Champaign UrbanaIL61801 United States Department of Astronomy University of Illinois at Urbana-Champaign UrbanaIL61801 United States California Institute of Technology 1200 E California Blvd PasadenaCA91125 United States Las Cumbres Observatory 6740 Cortona Drive Suite 102 GoletaCA93117 United States Caltech/IPAC-NExScI 1200 E California Blvd PasadenaCA91125 United States Department of Physics and Astronomy University of Delaware NewarkDE19716 United States Joseph R. Biden Jr . School of Public Policy and Administration University of Delaware NewarkDE19716 United States Data Science Institute University of Delaware NewarkDE19716 United States Center for Urban Science and Progress New York University 370 Jay St BrooklynNY11201 United States The Oskar Klein Centre for Cosmoparticle Physics Stockholm University AlbaNova StockholmSE-106 91 Sweden University of Chicago ChicagoIL60605 United States IBM Systems AustinTX78717 United States Observatories of the Carnegie Institution for Science 813 Santa Barbara St. PasadenaCA91101 United States Department of Mathematics West Virginia University MorgantownWV26506 United States Center for Gravitational Waves and Cosmology West Virginia University Chestnut Ridge Research Building MorgantownWV26505 United States NVIDIA 2788 San Tomas Expressway Santa ClaraCA95050 United States Center for Data Driven Discovery Caltech PasadenaCA91125 United States Department of Computer Science University of Illinois at Urbana-Champaign UrbanaIL61801 United States Argonne National Laboratory Leadership Computing Facility LemontIL60439 United States Department of Electrical & Computer Engineering University of Illinois at Urbana-Champaign UrbanaIL61801 United States School of Information Sciences University of Illinois at Urbana-Champaign UrbanaIL61801 United States Department of Physics University of Illinois at Urbana-Champaign UrbanaIL61801 Unit
This report provides an overview of recent work that harnesses the Big data Revolution and Large Scale Computing to address grand computational challenges in Multi-Messenger Astrophysics, with a particular emphasis on... 详细信息
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Dense sampling of bird diversity increases power of comparative genomics (vol 587, pg 252, 2020)
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NATURE 2021年 第7856期592卷 E24-E24页
作者: Feng, Shaohong Stiller, Josefin Deng, Yuan Armstrong, Joel Fang, Qi Reeve, Andrew Hart Xie, Duo Chen, Guangji Guo, Chunxue Faircloth, Brant C. Petersen, Bent Wang, Zongji Zhou, Qi Diekhans, Mark Chen, Wanjun Andreu-Sanchez, Sergio Margaryan, Ashot Howard, Jason Travis Parent, Carole Pacheco, George Sinding, Mikkel-Holger S. Puetz, Lara Cavill, Emily Ribeiro, Angela M. Eckhart, Leopold Fjeldsa, Jon Hosner, Peter A. Brumfield, Robb T. Christidis, Les Bertelsen, Mads F. Sicheritz-Ponten, Thomas Tietze, Dieter Thomas Robertson, Bruce C. Song, Gang Borgia, Gerald Claramunt, Santiago Lovette, Irby J. Cowen, Saul J. Njoroge, Peter Dumbacher, John Philip Ryder, Oliver A. Fuchs, Jerome Bunce, Michael Burt, David W. Cracraft, Joel Meng, Guanliang Hackett, Shannon J. Ryan, Peter G. Jonsson, Knud Andreas Jamieson, Ian G. da Fonseca, Rute R. Braun, Edward L. Houde, Peter Mirarab, Siavash Suh, Alexander Hansson, Bengt Ponnikas, Suvi Sigeman, Hanna Stervander, Martin Frandsen, Paul B. van der Zwan, Henriette van der Sluis, Rencia Visser, Carina Balakrishnan, Christopher N. Clark, Andrew G. Fitzpatrick, John W. Bowman, Reed Chen, Nancy Cloutier, Alison Sackton, Timothy B. Edwards, Scott V. Foote, Dustin J. Shakya, Subir B. Sheldon, Frederick H. Vignal, Alain Soares, Andre E. R. Shapiro, Beth Gonzalez-Solis, Jacob Ferrer-Obiol, Joan Rozas, Julio Riutort, Marta Tigano, Anna Friesen, Vicki Dalen, Love Urrutia, Araxi O. Szekely, Tamas Liu, Yang Campana, Michael G. Corvelo, Andre Fleischer, Robert C. Rutherford, Kim M. Gemmell, Neil J. Dussex, Nicolas Mouritsen, Henrik Thiele, Nadine Delmore, Kira Liedvogel, Miriam Franke, Andre Hoeppner, Marc P. Krone, Oliver Fudickar, Adam M. Mila, Borja Ketterson, Ellen D. Fidler, Andrew Eric Friis, Guillermo Parody-Merino, Angela M. Battley, Phil F. Cox, Murray P. Lima, Nicholas Costa Barroso Prosdocimi, Francisco Parchman, Thomas Lee Schlinger, Barney A. Loiselle, Bette A. Blake, John G. Lim, Haw Chuan Day, Lainy B. Fuxjager, Matthew J. Baldwin, Maude W. Braun, Michael J. Wirthlin, Morgan Dikow, China National GeneBank BGI-Shenzhen Shenzhen China State Key Laboratory of Genetic Resources and Evolution Kunming Institute of Zoology Chinese Academy of Sciences Kunming China BGI-Shenzhen Shenzhen China Villum Centre for Biodiversity Genomics Section for Ecology and Evolution Department of Biology University of Copenhagen Copenhagen Denmark BGI Education Center University of Chinese Academy of Sciences Shenzhen China MOE Laboratory of Biosystems Homeostasis and Protection Life Sciences Institute Zhejiang University Hangzhou China Department of Neuroscience and Developmental Biology University of Vienna Vienna Austria Center for Excellence in Animal Evolution and Genetics Chinese Academy of Sciences Kunming China James D. Watson Institute of Genome Sciences Hangzhou China UC Santa Cruz Genomics Institute UC Santa Cruz Santa Cruz CA USA Natural History Museum of Denmark University of Copenhagen Copenhagen Denmark Center for Macroecology Evolution and Climate GLOBE Institute University of Copenhagen Copenhagen Denmark Department of Biological Sciences Louisiana State University Baton Rouge LA USA Museum of Natural Science Louisiana State University Baton Rouge LA USA Centre of Excellence for Omics-Driven Computational Biodiscovery (COMBio) Faculty of Applied Sciences AIMST University Kedah Malaysia Section for Evolutionary Genomics The GLOBE Institute Faculty of Health and Medical Sciences University of Copenhagen Copenhagen Denmark Institute of Molecular Biology National Academy of Sciences Yerevan Armenia University Museum Norwegian University of Science and Technology Trondheim Norway Center for Reproductive Medicine The 2nd Affiliated Hospital School of Medicine Zhejiang University Hangzhou China Novogene Durham NC USA Duke University Medical Center Durham NC USA The Rockefeller University New York NY USA Howard Hughes Medical Institute Chevy Chase MD USA Department of Dermatology Medical University of Vienna Vienna Austria
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