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A few-shot learning approach for historical ciphered manuscript recognition

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arXiv 2020年

作者： Souibgui, Mohamed Ali Fornés, Alicia Kessentini, Yousri Tudor, Crina Computer Vision Center Computer Science Department Universitat Autònoma de Barcelona Spain Digital Research Center of Sfax 3021 MIRACL Laboratory Sfax University Sfax Tunisia Dept. of Linguistics and Philology Uppsala University Sweden

Encoded (or ciphered) manuscripts are a special type of historical documents that contain encrypted text. The automatic recognition of this kind of documents is challenging because: 1) the cipher alphabet changes from one document to another, 2) there is a lack of annotated corpus for training and 3) touching symbols make the symbol segmentation difficult and complex. To overcome these difficulties, we propose a novel method for handwritten ciphers recognition based on few-shot object detection. Our method first detects all symbols of a given alphabet in a line image, and then a decoding step maps the symbol similarity scores to the final sequence of transcribed symbols. By training on synthetic data, we show that the proposed architecture is able to recognize handwritten ciphers with unseen alphabets. In addition, if few labeled pages with the same alphabet are used for fine tuning, our method surpasses existing unsupervised and supervised HTR methods for ciphers recognition. Copyright © 2020, The Authors. All rights reserved.

关键词： Object detection

Characterizing the Contribution of Dependent Features in Xai Methods

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SSRN

SSRN 2023年

作者： Salih, Ahmed Galazzo, Ilaria Boscolo Raisi-Estabragh, Zahra Petersen, Steffen E. Menegaz, Gloria Radeva, Petia William Harvey Research Institute NIHR Barts Biomedical Research Centre Queen Mary University of London Charterhouse Square London LondonEC1M 6BQ United Kingdom Department of Computer Science Faculty of Science University of Zakho Zakho Way Road Kurdistan region Duhok42002 Iraq Department of Engineering for Innovation Medicine University of Verona Via S. Francesco 22 Verona Verona37129 Italy Barts Heart Centre St Bartholomew’s Hospital Barts Health NHS Trust West Smithfield LondonEC1A 7BE United Kingdom Health Data Research London United Kingdom Alan Turing Institute London United Kingdom de Matem`atiques i Inform`atica Universitat de Barcelona Gran Via de les Corts Catalanes Barcelona08007 Spain Computer Vision Center Cerdanyola del Valĺes Barcelona Spain Gloria and Petia sharing PI

Explainable Artificial Intelligence (XAI) provides tools to help understanding how the machine learning models work and reach a specific outcome. It helps to increase the interpretability of models and makes the models more trustworthy and transparent. In this context, many XAI methods were proposed being SHAP and LIME the most popular. However, the proposed methods assume that used predictors in the machine learning models are independent which in general is not necessarily true. Such assumption casts shadows on the robustness of the XAI outcomes such as the list of informative predictors. Here, we propose a simple, yet useful proxy that modifies the outcome of any XAI feature ranking method allowing to account for the dependency among the predictors. The proposed approach has the advantage of being model-agnostic as well as simple to calculate the impact of each predictor in the model in presence of collinearity. © 2023, The Authors. All rights reserved.

关键词： Lime

A spatiotemporal multi-scale computational model for FDG PET imaging at different stages of tumor growth and angiogenesis

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SCIENTIFIC REPORTS 2022年第1期12卷 1-16页

作者： Kashkooli, Farshad Moradi Abazari, Mohammad Amin Soltani, M. Ghazani, Mehran Akbarpour Rahmim, Arman Department of Mechanical Engineering K. N. Toosi University of Technology Tehran Iran Department of Electrical and Computer Engineering Faculty of Engineering School of Optometry and Vision Science Faculty of Science University of Waterloo Waterloo Canada Advanced Bioengineering Initiative Center Multidisciplinary International Complex K. N. Toosi University of Technology Tehran Iran Centre for Biotechnology and Bioengineering (CBB) University of Waterloo Waterloo ON Canada Faculty of Mechanical Engineering University of Tabriz Tabriz Iran Department of Integrative Oncology BC Cancer Research Institute Vancouver BC Canada Department of Physics and Astronomy University of British Columbia Vancouver BC Canada Department of Radiology University of British Columbia Vancouver BC Canada

A deeper understanding of the tumor microenvironment (TME) and its role in metabolic activity at different stages of vascularized tumors can provide useful insights into cancer progression and better support clinical assessments. In this study, a robust and comprehensive multi-scale computational model for spatiotemporal transport of F-18 fluorodeoxyglucose (FDG) is developed to incorporate important aspects of the TME, spanning subcellular-, cellular-, and tissue-level scales. Our mathematical model includes biophysiological details, such as radiopharmaceutical transport within interstitial space via convection and diffusion mechanisms, radiopharmaceutical exchange between intracellular and extracellular matrices by glucose transporters, cellular uptake of radiopharmaceutical, as well as its intracellular phosphorylation by the enzyme. Further, to examine the effects of tumor size by varying microvascular densities (MVDs) on FDG dynamics, four different capillary networks are generated by angiogenesis modeling. Results demonstrate that as tumor grows, its MVD increases, and hence, the spatiotemporal distribution of total FDG uptake by tumor tissue changes towards a more homogenous distribution. In addition, spatiotemporal distributions in tumor with lower MVD have relatively smaller magnitudes, due to the lower diffusion rate of FDG as well as lower local intravenous FDG release. Since mean standardized uptake value (SUVmean) differs at various stages of microvascular networks with different tumor sizes, it may be meaningful to normalize the measured values by tumor size and the MVD prior to routine clinical reporting. Overall, the present framework has the potential for more accurate investigation of biological phenomena within TME towards personalized medicine.

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A Potential Field Method for Tooth Motion Planning in Orthodontic Treatment

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IEEE Transactions on Visualization and computer Graphics 2025年

作者： Liu, Yumeng Ma, Yuexin Yang, Lei Zhang, Congyi Wei, Guangshun Chen, Runnan Gu, Min Pan, Jia Yang, Zhengbao Komura, Taku Xin, Shiqing Zhou, Yuanfeng Tu, Changhe Wang, Wenping University of Hong Kong Department of Computer Science Hong Kong ShanghaiTech University School of Information Science and Technology China Shanghai Engineering Research Center of Intelligent Vision and Imaging China University of Hong Kong Faculty of Dentistry Hong Kong The Hong Kong University of Science and Technology Department of Mechanical and Aerospace Engineering Hong Kong Shandong University China Texas A&M University United States

Invisible orthodontics, commonly known as clear alignment treatment, offers a more comfortable and aesthetically pleasing alternative in orthodontic care, attracting considerable attention in the dental community in recent years. It replaces conventional metal braces with a series of removable, and transparent aligners. Each aligner is crafted to facilitate a gradual adjustment of the teeth, ensuring progressive stages of dental correction. This necessitates the design for teeth motion. Here we present an automatic method and a system for generating collision-free teeth motion planning while avoiding gaps between adjacent teeth, which is unacceptable in clinical practice. To tackle this task, we formulate it as a constrained optimization problem and utilize the interior point method for its solution. We also developed an interactive system that enables dentists to easily visualize and edit the paths. Our method significantly speeds up the clear aligner planning process, creating the desired motion paths for a full set of teeth in under five minutes—a task that typically requires several hours of manual work. Our experiments and user studies confirm the effectiveness of this method in planning teeth movement, showcasing its potential to streamline orthodontic procedures. © 1995-2012 IEEE.

关键词： Biomedical materials

REFUGE2 CHALLENGE: A TREASURE TROVE FOR MULTI-DIMENSION ANALYSIS AND EVALUATION IN GLAUCOMA SCREENING

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arXiv 2022年

作者： Fang, Huihui Li, Fei Wu, Junde Fu, Huazhu Sun, Xu Son, Jaemin Yu, Shuang Zhang, Menglu Yuan, Chenglang Bian, Cheng Lei, Baiying Zhao, Benjian Xu, Xinxing Li, Shaohua Fumero, Francisco Sigut, José Almubarak, Haidar Bazi, Yakoub Guo, Yuanhao Zhou, Yating Baid, Ujjwal Innani, Shubham Guo, Tianjiao Yang, Jie Orlando, José Ignacio Bogunović, Hrvoje Zhang, Xiulan Xu, Yanwu The REFUGE2 Challenge Australia State Key Laboratory of Ophthalmology Zhongshan Ophthalmic Center Sun Yat-Sen University Guangdong Provincial Key Laboratory of Ophthalmology and Visual Science Guangzhou China Intelligent Healthcare Unit Baidu Inc. Beijing China The Institute of High Performance Computing Agency for Science Technology and Research Singapore Yatiris Group PLADEMA Institute CONICET UNICEN Tandil Argentina Christian Doppler Lab for Artificial Intelligence in Retina Department of Ophthalmology and Optometry Medical University of Vienna Vienna Austria VUNO Inc Seoul Korea Republic of Tencent HealthCare Tencent Shenzhen China Computer Vision Institute College of Computer Science and Software Engineering of Shenzhen University Shenzhen China School of Biomedical Engineering Health Science Center Shenzhen University China Xiaohe Healthcare ByteDance Guangdong Guangzhou510000 China School of Biomedical Engineering Shenzhen University China College of Computer Science & Software Engineering Shenzhen University China Department of Computer Science and Systems Engineering Universidad de La Laguna Spain Saudi Electronic University Saudi Arabia King Saud University Saudi Arabia Institute of Automation Chinese Academy of Sciences Beijing China University of Chinese Academy of Sciences Beijing China SGGS Institute of Engineering and Technology India Institute of Medical Robotics Shanghai Jiao Tong University China Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University China

With the rapid development of artificial intelligence (AI) in medical image processing, deep learning in color fundus photography (CFP) analysis is also evolving. Although there are some open-source, labeled datasets of CFPs in the ophthalmology community, large-scale datasets for screening only have labels of disease categories, and datasets with annotations of fundus structures are usually small in size. In addition, labeling standards are not uniform across datasets, and there is no clear information on the acquisition device. Here we release a multi-annotation, multi-quality, and multi-device color fundus image dataset for glaucoma analysis on an original challenge-Retinal Fundus Glaucoma Challenge 2nd Edition (REFUGE2). The REFUGE2 dataset contains 2000 color fundus images with annotations of glaucoma classification, optic disc/cup segmentation, as well as fovea localization. Meanwhile, the REFUGE2 challenge sets three sub-tasks of automatic glaucoma diagnosis and fundus structure analysis and provides an online evaluation framework. Based on the characteristics of multi-device and multi-quality data, some methods with strong generalizations are provided in the challenge to make the predictions more robust. This shows that REFUGE2 brings attention to the characteristics of real-world multi-domain data, bridging the gap between scientific research and clinical application. © 2022, CC BY-NC-ND.

关键词： Color

Deep Learning Techniques for In-Crop Weed Identification: A Review

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arXiv 2021年

作者： Hu, Kun Wang, Zhiyong Coleman, Guy Bender, Asher Yao, Tingting Zeng, Shan Song, Dezhen Schumann, Arnold Walsh, Michael School of Computer Science The University of Sydney NSW2006 Australia School of Life and Environmental Sciences The University of Sydney NSW2006 Australia Australian Centre for Field Robotics The University of Sydney NSW2008 Australia College of Information Science and Technology Dalian Maritime University Dalian116000 China College of Mathematics and Computer Science Wuhan Polytechnic University Hubei430023 China Department of Computer Science and Engineering Texas A&M University College StationTX77843-3127 United States Citrus Research and Education Center University of Florida FL33850-2299 United States

Weeds are a significant threat to agricultural productivity and the environment. The increasing demand for sustainable weed control practices has driven innovative developments in alternative weed control technologies aimed at reducing the reliance on herbicides. The barrier to adoption of these technologies for selective in-crop use is availability of suitably effective weed recognition. With the great success of deep learning in various vision tasks, many promising image-based weed detection algorithms have been developed. This paper reviews recent developments of deep learning techniques in the field of image-based weed detection. The review begins with an introduction to the fundamentals of deep learning related to weed detection. Next, recent advancements in deep weed detection are reviewed with the discussion of the research materials including public weed datasets. Finally, the challenges of developing practically deployable weed detection methods are summarized, together with the discussions of the opportunities for future research. We hope that this review will provide a timely survey of the field and attract more researchers to address this inter-disciplinary research problem. © 2021, CC BY.

关键词： Weed control

Generating 3D TOF-MRA volumes and segmentation labels using generative adversarial networks

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Medical Image Analysis 2022年 78卷 102396-102396页

作者： Subramaniam, Pooja Kossen, Tabea Ritter, Kerstin Hennemuth, Anja Hildebrand, Kristian Hilbert, Adam Sobesky, Jan Livne, Michelle Galinovic, Ivana Khalil, Ahmed A. Fiebach, Jochen B. Frey, Dietmar Madai, Vince I. CLAIM - Charité Lab for AI in Medicine Charité Universitätsmedizin Berlin Germany Department of Computer Engineering and Microelectronics Computer Vision & Remote Sensing Technical University Berlin Berlin Germany Berlin Germany Bernstein Center for Computational Neuroscience Berlin Germany Institute for Imaging Science and Computational Modelling in Cardiovascular Medicine Charité Universitätsmedizin Berlin Berlin Germany Fraunhofer MEVIS Max-von-Laue-Str. 2 Bremen Germany Department VI Computer Science and Media Beuth University of Applied Sciences Berlin Germany Johanna-Etienne-Hospital Neuss Germany Centre for Stroke Research Berlin Charité Universitätsmedizin Berlin Berlin Germany Department of Neurology Max Planck Institute for Human Cognitive and Brain Sciences Leipzig Germany Mind Brain Body Institute Berlin School of Mind and Brain Humboldt University Berlin Berlin Germany Berlin Institute of Health Berlin Germany School of Computing and Digital Technology Faculty of Computing Engineering and the Built Environment Birmingham City University Birmingham United Kingdom QUEST-Center for Transforming Biomedical Research Berlin Institute of Health Charité Universitätsmedizin Berlin Charitéplatz 1 Berlin10117 Germany

Deep learning requires large labeled datasets that are difficult to gather in medical imaging due to data privacy issues and time-consuming manual labeling. Generative Adversarial Networks (GANs) can alleviate these challenges enabling synthesis of shareable data. While 2D GANs have been used to generate 2D images with their corresponding labels, they cannot capture the volumetric information of 3D medical imaging. 3D GANs are more suitable for this and have been used to generate 3D volumes but not their corresponding labels. One reason might be that synthesizing 3D volumes is challenging owing to computational limitations. In this work, we present 3D GANs for the generation of 3D medical image volumes with corresponding labels applying mixed precision to alleviate computational constraints. We generated 3D Time-of-Flight Magnetic Resonance Angiography (TOF-MRA) patches with their corresponding brain blood vessel segmentation labels. We used four variants of 3D Wasserstein GAN (WGAN) with: 1) gradient penalty (GP), 2) GP with spectral normalization (SN), 3) SN with mixed precision (SN-MP), and 4) SN-MP with double filters per layer (c-SN-MP). The generated patches were quantitatively evaluated using the Fréchet Inception Distance (FID) and Precision and Recall of Distributions (PRD). Further, 3D U-Nets were trained with patch-label pairs from different WGAN models and their performance was compared to the performance of a benchmark U-Net trained on real data. The segmentation performance of all U-Net models was assessed using Dice Similarity Coefficient (DSC) and balanced Average Hausdorff Distance (bAVD) for a) all vessels, and b) intracranial vessels only. Our results show that patches generated with WGAN models using mixed precision (SN-MP and c-SN-MP) yielded the lowest FID scores and the best PRD curves. Among the 3D U-Nets trained with synthetic patch-label pairs, c-SN-MP pairs achieved the highest DSC (0.841) and lowest bAVD (0.508) compared to the benchmark

关键词： Generative adversarial networks

Automated Controller Placement for Software-Defined Networks to Resist DDoS Attacks

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computers, Materials & Continua 2021年第9期68卷 3147-3165页

作者： Muhammad Reazul Haque Saw Chin Tan Zulfadzli Yusoff Kashif Nisar Lee Ching Kwang Rizaludin Kaspin Bhawani Shankar Chowdhry Rajkumar Buyya Satya Prasad Majumder Manoj Gupta Shuaib Memon Faculty of Computing&Informatics Multimedia UniversityPersiaran MultimediaCyberjaya63100SelangorMalaysia Faculty of Engineering Multimedia UniversityPersiaran MultimediaCyberjaya63100SelangorMalaysia Faculty of Computing and Informatics University Malaysia SabahJalan UMSKota Kinabalu Sabah88400Malaysia Telekom Malaysia Research&Development TM Innovation CentreCyberjaya63000SelangorMalaysia National Center of Robotics and Automation Mehran University of Engineering&TechnologyJamshoroPakistan Department of Computer Science and Engineering Hanyang UniversitySeoul04763South Korea School of Electrical and Electronic Engineering Nanyang Technological University639798Singapore Cloud Computing and Distributed Systems Laboratory The University of MelbourneMelbourneVIC 3053Australia Department of Electrical and Electronic Engineering Bangladesh University of Engineering and Technology(BUET)Dhaka1205Bangladesh Department of Electronics and Communication Engineering JECRC UniversityVidhaniJaipur303905India Auckland Institute of Studies Mt AlbertAucklandNew Zealand

In software-defined networks(SDNs),controller placement is a critical factor in the design and planning for the future Internet of Things(IoT),telecommunication,and satellite communication *** research has concentrated largely on factors such as reliability,latency,controller capacity,propagation delay,and energy ***,SDNs are vulnerable to distributed denial of service(DDoS)attacks that interfere with legitimate use of the *** ever-increasing frequency of DDoS attacks has made it necessary to consider them in network design,especially in critical applications such as military,health care,and financial services networks requiring high *** propose a mathematical model for planning the deployment of SDN smart backup controllers(SBCs)to preserve service in the presence of DDoS *** a number of input parameters,our model has two distinct ***,it determines the optimal number of primary controllers to place at specific locations or nodes under normal operating ***,it recommends an optimal number of smart backup controllers for use with different levels of DDoS *** goal of the model is to improve resistance to DDoS attacks while optimizing the overall cost based on the *** simulated results demonstrate that the model is useful in planning for SDN reliability in the presence of DDoS attacks while managing the overall cost.

关键词： SDN automated controller placement SBC ILP DDoS attack

Global and Local Mamba Network for Multi-Modality Medical Image Super-Resolution

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arXiv 2025年

作者： Ji, Zexin Zou, Beiji Kui, Xiaoyan Thureau, Sbastien Ruan, Su School of Computer Science and Engineering Central South University Changsha410083 China Hunan Engineering Research Center of Machine Vision and Intelligent Medicine Central South University Changsha410083 China University of Rouen-Normandy LITIS QuantIF UR 4108 RouenF-76000 France Department of Nuclear Medicine Henri Becquerel Cancer Center Rouen France

Convolutional neural networks and Transformer have made significant progresses in multi-modality medical image super-resolution. However, these methods either have a fixed receptive field for local learning or significant computational burdens for global learning, limiting the super-resolution performance. To solve this problem, State Space Models, notably Mamba, is introduced to efficiently model long-range dependencies in images with linear computational complexity. Relying on the Mamba and the fact that low-resolution images rely on global information to compensate for missing details, while high-resolution reference images need to provide more local details for accurate super-resolution, we propose a global and local Mamba network (GLMamba) for multi-modality medical image super-resolution. To be specific, our GLMamba is a two-branch network equipped with a global Mamba branch and a local Mamba branch. The global Mamba branch captures long-range relationships in low-resolution inputs, and the local Mamba branch focuses more on short-range details in high-resolution reference images. We also use the deform block to adaptively extract features of both branches to enhance the representation ability. A modulator is designed to further enhance deformable features in both global and local Mamba blocks. To fully integrate the reference image for low-resolution image super-resolution, we further develop a multi-modality feature fusion block to adaptively fuse features by considering similarities, differences, and complementary aspects between modalities. In addition, a contrastive edge loss (CELoss) is developed for sufficient enhancement of edge textures and contrast in medical images. Quantitative and qualitative experimental results show that our GLMamba achieves superior super-resolution performance on BraTS2021and IXI datasets. We also validate the effectiveness of our approach on the downstream tumor segmentation task. Copyright © 2025, The Authors. All rights res

关键词： Image coding