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arXiv 2020年

作者： Li, Zhang Zhang, Jiehua Tan, Tao Teng, Xichao Sun, Xiaoliang Li, Yang Liu, Lihong Xiao, Yang Lee, Byungjae Li, Yilong Zhang, Qianni Sun, Shujiao Zheng, Yushan Yan, Junyu Li, Ni Hong, Yiyu Ko, Junsu Jung, Hyun Liu, Yanling Chen, Yu-Cheng Wang, Ching-Wei Yurovskiy, Vladimir Maevskikh, Pavel Khanagha, Vahid Jiang, Yi Feng, Xiangjun Liu, Zhihong Li, Daiqiang Schüffler, Peter J. Yu, Qifeng Chen, Hui Tang, Yuling Litjens, Geert College of Aerospace Science and Engineering National University of Defense Technology Changsha410073 China Department of Mathematics and Computer Science Eindhoven University of Technology Netherlands and ScreenPoint Medical Eindhoven Nijmegen5600 MB Netherlands Pingan Technology Shenzhen China Lunit Inc. Seoul Korea Republic of School of Electrical Engineering and Computer Science Queen Mary University of London London United Kingdom Image Processing Center School of Astronautics Beihang University Beijing102206 China Beijing Advanced Innovation Center for Biomedical Engineering Beijing100191 China Beijing Advanced Innovation Center for Biomedical Engineering Beihang University Image Processing Center School of Astronautics Beihang University Beijing102206 China AstLab School of Automatationm Beihang University Beijing China Department of R&D Center Arontier Co. Ltd. Seoul Korea Republic of Frederick National Laboratory United States Center of Computer Vision and Medical Imaging Graduate Institute of Biomedical Engineering Graduate institute of Applied Science and Technology National Taiwan University of Science and Technology AI Explore Taipei Taiwan Research Department Sky-chain Global Yekaterinburg Russia Audio Solutions Team Motorola Solutions Inc. PlantationFL United States Second Xiangya Hospital Central South University Changsha China Hunan Biotechnology Ltd. Changsha China Hunan Cancer Hospital Central South University Changsha China Memorial Sloan Kettering Cancer Center United States First Hospital of Changsha City Changsha China Radboud University Medical Center Nijmegen Netherlands

Accurate segmentation of lung cancer in pathology slides is a critical step in improving patient care. We proposed the ACDC@LungHP (Automatic Cancer Detection and Classification in Whole-slide Lung Histopathology) challenge for evaluating different computer-aided diagnosis (CADs) methods on the automatic diagnosis of lung cancer. The ACDC@LungHP 2019 focused on segmentation (pixel-wise detection) of cancer tissue in whole slide imaging (WSI), using an annotated dataset of 150 training images and 50 test images from 200 patients. This paper reviews this challenge and summarizes the top 10 submitted methods for lung cancer segmentation. All methods were evaluated using the false positive rate, false negative rate, and DICE coefficient (DC). The DC ranged from 0.7354±0.1149 to 0.8372±0.0858. The DC of the best method was close to the inter-observer agreement (0.8398±0.0890). All methods were based on deep learning and categorized into two groups: multi-model method and single model method. In general, multi-model methods were significantly better (p Copyright © 2020, The Authors. All rights reserved.

关键词： Biological organs

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Author Correction: BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets

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Nature methods 2024年第10期21卷 1959页

作者： Linus Manubens-Gil Zhi Zhou Hanbo Chen Arvind Ramanathan Xiaoxiao Liu Yufeng Liu Alessandro Bria Todd Gillette Zongcai Ruan Jian Yang Miroslav Radojević Ting Zhao Li Cheng Lei Qu Siqi Liu Kristofer E Bouchard Lin Gu Weidong Cai Shuiwang Ji Badrinath Roysam Ching-Wei Wang Hongchuan Yu Amos Sironi Daniel Maxim Iascone Jie Zhou Erhan Bas Eduardo Conde-Sousa Paulo Aguiar Xiang Li Yujie Li Sumit Nanda Yuan Wang Leila Muresan Pascal Fua Bing Ye Hai-Yan He Jochen F Staiger Manuel Peter Daniel N Cox Michel Simonneau Marcel Oberlaender Gregory Jefferis Kei Ito Paloma Gonzalez-Bellido Jinhyun Kim Edwin Rubel Hollis T Cline Hongkui Zeng Aljoscha Nern Ann-Shyn Chiang Jianhua Yao Jane Roskams Rick Livesey Janine Stevens Tianming Liu Chinh Dang Yike Guo Ning Zhong Georgia Tourassi Sean Hill Michael Hawrylycz Christof Koch Erik Meijering Giorgio A Ascoli Hanchuan Peng Institute for Brain and Intelligence Southeast University Nanjing China. Microsoft Corporation Redmond WA USA. Tencent AI Lab Bellevue WA USA. Computing Environment and Life Sciences Directorate Argonne National Laboratory Lemont IL USA. Kaya Medical Seattle WA USA. University of Cassino and Southern Lazio Cassino Italy. Center for Neural Informatics Structures and Plasticity Krasnow Institute for Advanced Study George Mason University Fairfax VA USA. Faculty of Information Technology Beijing University of Technology Beijing China. Beijing International Collaboration Base on Brain Informatics and Wisdom Services Beijing China. Nuctech Netherlands Rotterdam the Netherlands. Janelia Research Campus Howard Hughes Medical Institute Ashburn VA USA. Department of Electrical and Computer Engineering University of Alberta Edmonton Alberta Canada. Ministry of Education Key Laboratory of Intelligent Computation and Signal Processing Anhui University Hefei China. Paige AI New York NY USA. Scientific Data Division and Biological Systems and Engineering Division Lawrence Berkeley National Lab Berkeley CA USA. Helen Wills Neuroscience Institute and Redwood Center for Theoretical Neuroscience UC Berkeley Berkeley CA USA. RIKEN AIP Tokyo Japan. Research Center for Advanced Science and Technology (RCAST) The University of Tokyo Tokyo Japan. School of Computer Science University of Sydney Sydney New South Wales Australia. Texas A&M University College Station TX USA. Cullen College of Engineering University of Houston Houston TX USA. Graduate Institute of Biomedical Engineering National Taiwan University of Science and Technology Taipei Taiwan. National Centre for Computer Animation Bournemouth University Poole UK. PROPHESEE Paris France. Department of Neuroscience Columbia University New York NY USA. Mortimer B. Zuckerman Mind Brain Behavior Institute Columbia University New York NY USA. Department of Computer Science Northern Illinois Universit

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GPU-based fast hyperspectral image classification using joint sparse representation with spectral consistency constraint

GPU-based fast hyperspectral image classification using join...

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作者： Pan, Lei Li, Heng-Chao Ni, Jun Chen, Chen Chen, Xiang-Dong Du, Qian The School of Information Science & Technology Southwest Jiaotong University Chengdu610031 China The College of Information Science and Technology Beijing University of Chemical Technology Beijing100029 China The Center of Research in Computer Vision University of Central Florida OrlandoFL32816 United States The Department of Electrical and Computer Engineering Mississippi State University Mississippi StateMS39762 United States

Due to the fact that neighboring hyperspectral pixels often belong to the same class with high probability, spatial correlation between pixels has been widely used in hyperspectral image classification. In this paper, a novel joint sparse representation classifier with spectral consistency constraint (JSRC-SCC) is proposed. Specifically, to efficiently exploit contextual structure information, a local adaptive weighted average value is reallocated as the central pixel of a window through spatial filtering, and then, representation coefficients are estimated by the joint sparse representation model, which is imposed by the spectral consistency constraint under l1-minimization. For the purpose of fast classification, graphics processing units are adopted to accelerate this model. Experimental results on two classical hyperspectral image data sets demonstrate the proposed method can not only produce satisfying classification performance, but also shorten the computational time significantly. © 2018, Springer-Verlag GmbH Germany, part of Springer Nature.

关键词： Graphics processing unit

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Optimized environment exploration for autonomous underwater vehicles

Optimized environment exploration for autonomous underwater ...

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IEEE International Conference on robotics and Automation

作者： Eduard Vidal Juan David Hernandez Klemen Istenic Marc Carreras Underwater Robotics Research Center (CIRS) University of Girona Spain Department of Computer Science Rice University Houston USA

Achieving full autonomous robotic environment exploration in the underwater domain is very challenging, mainly due to noisy acoustic sensors, high localization error, control disturbances of the water and lack of accurate underwater maps. In this work we present a robotic exploration algorithm for underwater vehicles that does not rely on prior information about the environment. Our method has been greatly influenced by many robotic exploration, view planning and path planning algorithms. The proposed method constitutes a significant improvement over our previous work [1]: Firstly, we refine our exploration approach to improve robustness;Secondly, we propose an alternative map representation based on the quadtree data structure that allows different relevant queries to be performed efficiently, reducing the computational cost of the viewpoint generation process;Thirdly, we present an algorithm that is capable of generating consistent maps even when noisy sonar data is used. The aforementioned contributions have increased the reliability of the algorithm, allowing new real experiments performed in artificial structures but also in more challenging natural environments, from which we provide a 3D reconstruction to show that with this algorithm full optical coverage is obtained.

关键词： Cameras Sonar Planning Robot sensing systems Inspection Three-dimensional displays

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Development of mobile-based application for practical wood identification

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IOP Conference Series: Earth and Environmental science 2020年第1期572卷

作者： M R Arifin E P B Sugiarto R Wardoyo Y Rianto Computer Vision Research Group Research Center for Informatics Indonesian Institute of Sciences (LIPI) Bandung Indonesia Department of Informatics Faculty of Engineering Universitas Sangga Buana YPKP Bandung Indonesia Center for The Utilization and Innovation of Science and Technology Indonesian Institute of Sciences (LIPI) Cibinong Indonesia

Wood Identification is an important task, especially for wood anatomist. The identification process is required in many fields, such as custom ports, forest survey, and wood industries. However, expertise-in wood identification is limited due to a few wood anatomists. To enable wood identification can be performed in a broader area, a mobile-based application is proposed to realise these purposes. The paper presents the development of a mobile-based application for wood identification. A dataset of Indonesian commercial wood images of cross-section surface was collected from Xylarium Bogoriense, The Ministry of Environment and Forestry of The Republic of Indonesia. The images were collected using a smartphone camera at optical magnification level around 200 times and a minimum resolution of 12 megapixels. The collected images were then used to develop a deep learning-based algorithm to classify wood species. These images are considered as the training datasets, whereas testing dataset is collected in another session. The final model obtained through the training process is then stored in a cloud-based server at research center for Informatics, Indonesian Institute of sciences. A mobile application, namely AIKO stands of Indonesian words-Alat Identifikasi Kayu Otomatis (Automatic Tool for Wood Identification), is developed to enable image acquisition and images transferring to the server. AIKO application sends the acquired image to the trained identification model in the server. The output of the identification model is the species name of the observed images. Besides species/botanical name, AIKO also provides information on trade names, specific gravity and density, durability class, strength class, commercial timber classification, and recommended utilization.

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Associations between Aβ deposition and neurometabolic alterations in Alzheimer's disease: Insights from hybrid 3D MRSI-PET imaging

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Alzheimer's & dementia : the journal of the Alzheimer's Association 2025年第6期21卷 e70332页

作者： Miao Zhang Jialin Hu Yaoyu Zhang Ziyu Meng Yibo Zhao Yudu Li Wen Jin Xiao-Hang Qian Lijun Wang Guanyu Ye Xu-Feng Jiang Ya-Dong Li Jian Ye Huidong Tang Jun Liu Parashkev Nachev Zhi-Pei Liang Biao Li Yao Li Department of Nuclear Medicine Ruijin Hospital School of Biomedical Engineering Shanghai Jiao Tong University Shanghai China. National Engineering Research Center of Advanced Magnetic Resonance Technologies for Diagnosis and Therapy Shanghai Jiao Tong University Shanghai China. Institute of Medical Robotics Shanghai Jiao Tong University Shanghai China. Beckman Institute for Advanced Science and Technology University of Illinois at Urbana-Champaign Urbana Illinois USA. Department of Electrical and Computer Engineering University of Illinois at Urbana-Champaign Urbana Illinois USA. National Center for Supercomputing Applications University of Illinois at Urbana-Champaign Urbana Illinois USA. Department of Geriatrics Ruijin Hospital Shanghai Jiao Tong University School of Medicine Shanghai China. Medical Center on Aging of Ruijin Hospital Shanghai Jiao Tong University School of Medicine Shanghai China. Department of Neurology and Institute of Neurology Ruijin Hospital Shanghai Jiao Tong University School of Medicine Shanghai China. Department of Neurovascular Center Changhai Hospital Naval Medical University Shanghai China. Department of Gastroenterology Songjiang Hospital and Songjiang Research Institute Shanghai Key Laboratory of Emotions and Affective Disorders State Key Laboratory of Eye Health Shanghai Jiao Tong University School of Medicine Shanghai China. Shanghai Key Laboratory of Gynecologic Oncology Renji Hospital School of Medicine Shanghai Jiao Tong University Shanghai China. High-Dimensional Neurology Group Institute of Neurology University College London London UK.

INTRODUCTION:Understanding the neurometabolic changes associated with amyloid-β (Aβ) deposition is important for early Alzheimer's disease (AD) diagnosis, but their spatial relationships remained unexplored due to technical limitations. METHODS:We investigated the relationship between Aβ deposition and neuronal and glial metabolites using high-resolution 3D magnetic resonance spectroscopic imaging (MRSI) (8-min scan, 2 × 3 × 3 mm resolution) and Aβ-positron emission tomography (Aβ-PET) imaging. N-acetylaspartate, myo-inositol, and creatine maps were obtained from 174 participants: 39 controls, 65 mild cognitive impairment (MCI), and 70 AD patients. RESULTS:N-Acetylaspartate levels were negatively correlated with Aβ, while myo-inositol levels were positively correlated globally. Regional associations with Aβ include N-acetylaspartate reductions in frontal cortex, anterior cingulate cortex, and precuneus, and myo-inositol increases in precuneus, lateral temporal, and lateral parietal cortices. Combined MRSI and PET biomarkers achieved the highest diagnostic accuracy for MCI and AD . DISCUSSION:Hybrid high-resolution 3D MRSI and Aβ-PET imaging provides valuable insights into Aβ's impact on neurometabolic changes, improving early AD diagnosis. HIGHLIGHTS:Hybrid 3D magnetic resonance spectroscopic imaging-positron emission tomography (MRSI-PET) imaging reveals Aβ deposition impact on neurometabolism in Alzheimer's disease (AD). N-acetylaspartate (NAA) as a neuronal metabolic marker is negatively associated with Aβ globally and locally. Myo-inositol (mI) as a glial metabolic marker is positively associated with Aβ globally and locally. Combining 3D magnetic resonance spectroscopic imaging (MRSI) and PET biomarkers improves diagnostic accuracy for mild cognitive impairment (MCI) and AD.

关键词： alzheimer's disease amyloid‐β magnetic resonance spectroscopic imaging myo‐inositol n‐acetylaspartate

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Design optimization of a cable-driven parallel robot in upper arm training-rehabilitation processes 6th

Design optimization of a cable-driven parallel robot in uppe...

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6th International Symposium on Multibody Systems and Mechatronics, MuSMe 2017

作者： Hernandez, Eusebio Valdez, S. Ivvan Carbone, Giuseppe Ceccarelli, Marco Secc. de Estudios de Posgrado e Investigacion ESIME UP TICOMAN IPN Mexico City Mexico Department of Computer Science Center for Research in Mathematics Mexico City Mexico Laboratory of Robotics and Mechatronics University of Cassino and Southern Lazio Meridionale Cassino Italy

ISBN: (纸本)9783319675664

This paper presents an optimized design of a cable driven parallel manipulator which is intended in rehabilitation or exercise of patients with shoulder problems like illness, traumatic events or for the elderly who need to exercise their limbs. Cable based parallel manipulators have characteristics that make them suitable for rehabilitation-exercise purposes like large workspace, re-configurable architecture, portability and low cost. From these purposes, upper-limb movements are analyzed and different prescribed workspaces are defined. After kinematic and wrench analysis, the Jacobian matrix of the cable driven manipulator is derived, which is used as a quantitative representation of dexterity along the workspace. An optimization model is presented to simultaneously fulfill the prescribed workspace and to improve dexterity by selecting proper length cables and other structural parameters. Numerical examples delineate effectiveness of an Estimation of Distribution Algorithm (EDA), where correlation among variables are inserted in the optimization process. © 2018, Springer International Publishing AG.

关键词： Cables

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Automated Recognition of Sleep Arousal Using Multimodal and Personalized Deep Ensembles of Neural Networks

Automated Recognition of Sleep Arousal Using Multimodal and ...

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computers in Cardiology (CinC)

作者： Andrea Patane Shadi Ghiasi Enzo Pasquale Scilingo Marta Kwiatkowska Department of Computer Science University of Oxford Bioengineering and Robotics Research Center “Enrico Piaggio” & Department of Information Engineering University of Pisa Pisa Italy

ISBN: (纸本)9781728109244

Background and Aim: Monitoring physiological signals during sleep can have substantial impact on detecting temporary intrusion of wakefulness, referred to as sleep arousals. To overcome the problems associated with the cubersome visual inspection of these events by experts, sleep arousal recognition algorithms have been proposed. Method: As part of the Physionet/Computing in Cardiology Challenge 2018, this study proposes a deep ensemble neural network architecture for automatic arousal recognition from multi-modal sensor signals. Separate branches of the neural network extract features from electro-encephalography, electrooculography, electromyogram, breathing patterns and oxygen saturation level; and a final fully-connected neural network combines features computed from the signal sources to estimate the probability of arousal in each region of interest. We investigate the use of shared-parameter Siamese architectures for effective feature calibration. Namely, at each forward and backward pass through the network we concatenate to the input a user-specific template signal that is processed by an identical copy of the network. Result: The proposed architecture obtains an AUPR score of 0.40 on the test set of the official phase of Physionet/CbiC Challenge 2018. A score of 0.45 is obtained by means of 10 -fold cross-validation on the training set.

关键词： Sleep Electroencephalography Training Electromyography computer architecture Electrooculography Neural networks

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Automatic Scale Estimation of Structure from Motion based 3D models using laser scalers

arXiv

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arXiv 2019年

作者： Istenic, Klemen Gracias, Nuno Arnaubec, Aurlien Escartn, Javier Garcia, Rafael Underwater Robotics Research Center Computer Vision and Robotics Institute University of Girona Edifici P-IV Campus de Montilivi Girona17071 Spain Coronis Computing S.L. Science and Technological Park of UdG Carrer Pic de Peguera 15 Girona17003 Spain IFREMER Ctr Mediterranee Unit Syst. Marins La Seyne Sur MerF-83507 Universit de Paris Institut de Physique du Globe de Paris CNRS F-75005 France

Recent advances in structure-from-motion techniques are enabling many scientific fields to benefit from the routine creation of detailed 3D models. However, for a large number of applications, only a single camera is available for the image acquisition, due to cost or space constraints in the survey platforms. Monocular structure-from-motion raises the issue of properly estimating the scale of the 3D models, in order to later use those models for metrology. The scale can be determined from the presence of visible objects of known dimensions, or from information on the magnitude of the camera motion provided by other sensors, such as GPS. This paper addresses the problem of accurately scaling 3D models created from monocular cameras in GPS-denied environments, such as in underwater applications. Motivated by the common availability of underwater laser scalers, we present two novel approaches which are suitable for different laser scaler configurations. A fully-calibrated method enables the use of arbitrary laser setups, while a partially-calibrated method reduces the need for calibration by only assuming parallelism on the laser beams, with no constraints on the camera. The proposed methods have several advantages with respect to the existing methods. By using the known geometry of the scene expressed by the 3D model, along with some parameters of the laser scaler geometry, the need for laser alignment with the optical axis of the camera is removed. Furthermore, the extremely error-prone manual identification of image points on the 3D model, currently required in image-scaling methods, is eliminated as well. The performance of the methods and their applicability was evaluated on both data generated from a realistic 3D model and data collected during an oceanographic cruise in 2017. Three separate laser configurations have been tested, encompassing nearly all possible laser setups, to evaluate the effects of terrain roughness, noise, camera perspective angle and camer

关键词： Cameras

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Learning a saliency evaluation metric using crowdsourced perceptual judgments

arXiv

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arXiv 2018年

作者： Xia, Changqun Li, Jia Su, Jinming Borji, Ali State Key Laboratory of Virtual Reality Technology and Systems School of Computer Science and Engineering Beihang University Beijing China International Research Institute for Multidisciplinary Science Beihang University Beijing China Center for Research in Computer Vision Computer Science Department University of Central Florida OrlandoFL United States

In the area of human fixation prediction, dozens of computational saliency models are proposed to reveal certain saliency characteristics under different assumptions and definitions. As a result, saliency model benchmarking often requires several evaluation metrics to simultaneously assess saliency models from multiple perspectives. However, most computational metrics are not designed to directly measure the perceptual similarity of saliency maps so that the evaluation results may be sometimes inconsistent with the subjective impression. To address this problem, this paper first conducts extensive subjective tests to find out how the visual similarities between saliency maps are perceived by humans. Based on the crowdsourced data collected in these tests, we conclude several key factors in assessing saliency maps and quantize the performance of existing metrics. Inspired by these factors, we propose to learn a saliency evaluation metric based on a two-stream convolutional neural network using crowdsourced perceptual judgements. Specifically, the relative saliency score of each pair from the crowdsourced data is utilized to regularize the network during the training process. By capturing the key factors shared by various subjects in comparing saliency maps, the learned metric better aligns with human perception of saliency maps, making it a good complement to the existing metrics. Experimental results validate that the learned metric can be generalized to the comparisons of saliency maps from new images, new datasets, new models and synthetic data. Due to the effectiveness of the learned metric, it also can be used to facilitate the development of new models for fixation prediction. Copyright © 2018, The Authors. All rights reserved.

关键词： Crowdsourcing

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