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Aligning satellite-based phenology in a deep learning model for improved crop yield estimates over large regions

Agricultural and Forest Meteorology 2025年 372卷

作者： Jiaying Zhang Kaiyu Guan Zhangliang Chen James Hipple Yizhi Huang Bin Peng Sibo Wang Xiangtao Xu Zhenong Jin Kejie Zhao Maxwell Jong Agroecosystem Sustainability Center Institute for Sustainability Energy and Environment University of Illinois Urbana-Champaign Urbana IL 61801 USA Department of Natural Resources and Environmental Sciences College of Agricultural Consumers and Environmental Sciences University of Illinois Urbana-Champaign Urbana IL 61801 USA National Center for Supercomputing Applications University of Illinois Urbana-Champaign Urbana IL 61801 USA Siebel School of Computing and Data Science University of Illinois Urbana-Champaign Urbana IL USA Risk Management Agency United States Department of Agriculture Washington DC 20250 USA Department of Ecology and Evolutionary Biology Cornell University Ithaca NY 14853 USA Department of Bioproducts and Biosystems Engineering University of Minnesota St. Paul MN 55108 USA

Accurate estimate of crop yield is crucial for agricultural planning and resource allocation. Crop yield estimation over large regions is especially challenging because of large variations of crop phenology and environmental conditions. Environmental stresses, such as drought and heat, during different phenological stages impose different impacts on plant growth and thus on final grain yield. We hypothesize that incorporating the phenology information, specifically, aligning environmental conditions with plant phenological timing, can better simulate the impact of environmental conditions on crop yield and thus improve crop yield estimates. To test our hypothesis, we build a deep learning model to predict crop yield using growing-season weather and satellite time series that are either aligned with field-level phenology or not. Based on rainfed corn fields in the 12 states in the US Midwest between 2011 and 2020, we show that applying the aligned phenology in the deep learning model decreases the error of corn yield estimates from 34.1 bu/ac (or 21.8 %) to 29.2 bu/ac (or 18.7 %) and increase the explained yield variability from 61 % to 71 % for leave-one-year-out predictions. The improvements are most significant in fields with yield loss that are associated with early phenological timing. Specifically, in the extreme drought year 2012, the phenology was ∼20 days earlier than normal years, aligning the input sequences with field-level phenological timing captures 78 % of the yield loss, reduces the error by 15 %, and increases the explained variability over 50 %. Our results demonstrate the importance of aligned phenological timing for capturing environmental stress in crop yield estimates and show great potential of phenology alignment in accurate crop yield estimates over large regions.

关键词： Crop yield estimates Crop phenology Yield loss Deep learning Satellite

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Effect of channel thickness on the particle diffusion and permeability of carbon nanotubes a membrane in reverse electrodialysis process using molecular dynamics simulation

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International Communications in Heat and Mass Transfer 2025年 166卷

作者： Shuai Sun Ali Basem Narinderjit Singh Sawaran Singh Younis Mohamed Atiah Al-zahy Salman Saeidlou Khursheed Muzammil Soheil Salahshour S. Mohammad Sajadi Hani Sahramaneshi School of Energy and Constructional Engineering Shandong Huayu University of Technology Dezhou Shandong 253034 China Faculty of Engineering DongShin University Naju-si Jeollanam-do 58245 South Korea Faculty of Engineering Warith Al-Anbiyaa University Karbala 56001 Iraq Faculty of Data Science and Information Technology INTI International University Persiaran Perdana BBN Putra Nilai Nilai 71800 Malaysia Department of Physics College of Education Misan University Maysan Iraq School of Engineering Technology and Design Canterbury Christ Church University Kent UK Department of Public Health College of Applied Medical Sciences Khamis Mushait Campus King Khalid University Abha 62561 Saudi Arabia Faculty of Engineering and Natural Sciences Istanbul Okan University Istanbul Turkey Faculty of Engineering and Natural Sciences Bahcesehir University Istanbul Turkey Research Center of Applied Mathematics Khazar University Baku Azerbaijan Department of Chemistry Payam e Noor University Saqqez Branch Saqqez Kurdistan Iran Fast Computing Center Shabihsazan Ati Pars Tehran Iran

Adopting innovative technology and solutions is critical for ensuring clean water. Several methods may be used to remove salts from water. They may be divided into two categories: membranes and heat. Reverse electrodialysis, which uses a membrane, is an efficient way of separating substances. Prior research investigated system-level factors, but the nanoscale mechanisms that drive ion and water penetration across membranes were poorly understood. This study closed a research gap by investigating the influence of carbon nanotube membrane thickness on particle mobility and fluid dynamics in reverse electrodialysis systems. The research is contributed to the enhancement of energy conversion efficiency and membrane performance in reverse electrodialysis systems by offering a comprehensive understanding of the influence of channel thickness on particle transport and selectivity through the carbon nanotube membrane. Molecular dynamics simulations using the LAMMPS software package are conducted to examine the effect of carbon nanotube thickness variation (1-layer vs 2-layer) on fluid flow, ionic current, hydrogen bonding, and fluid density. To the findings, increasing the thickness of a carbon nanotube from one layer to two layers decreases the fluid flow rate to 203.79 atoms/ns and the current from 5.31 e/ns to 5.15 e/ns. Additionally, the number of broken hydrogen bonds decreases from 116 to 105, indicating decreased permeability and increased stability of the hydrogen-bonding network. In addition to offering useful information for the construction of more effective and selective membranes in renewable energy applications, these results provided a molecular understanding of how carbon nanotube thickness affected reverse electrodialysis effectiveness.

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Scientific discovery in the age of artificial intelligence

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NATURE 2023年第7978期621卷 E33-E33页

作者： Wang, Hanchen Fu, Tianfan Du, Yuanqi Gao, Wenhao Huang, Kexin Liu, Ziming Chandak, Payal Liu, Shengchao Van Katwyk, Peter Deac, Andreea Anandkumar, Anima Bergen, Karianne Gomes, Carla P. Ho, Shirley Kohli, Pushmeet Lasenby, Joan Leskovec, Jure Liu, Tie-Yan Manrai, Arjun Marks, Debora Ramsundar, Bharath Song, Le Sun, Jimeng Tang, Jian Velickovic, Petar Welling, Max Zhang, Linfeng Coley, Connor W. Bengio, Yoshua Zitnik, Marinka Department of Engineering University of Cambridge Cambridge UK Department of Computing and Mathematical Sciences California Institute of Technology Pasadena CA USA NVIDIA Santa Clara CA USA Department of Computational Science and Engineering Georgia Institute of Technology Atlanta GA USA Department of Computer Science Cornell University Ithaca NY USA Department of Chemical Engineering Massachusetts Institute of Technology Cambridge MA USA Department of Electrical Engineering and Computer Science Massachusetts Institute of Technology Cambridge MA USA Department of Computer Science Stanford University Stanford CA USA Department of Physics Massachusetts Institute of Technology Cambridge MA USA Harvard-MIT Program in Health Sciences and Technology Cambridge MA USA Mila – Quebec AI Institute Montreal Quebec Canada Université de Montréal Montreal Quebec Canada HEC Montréal Montreal Quebec Canada CIFAR AI Chair Toronto Ontario Canada Department of Earth Environmental and Planetary Sciences Brown University Providence RI USA Data Science Institute Brown University Providence RI USA Center for Computational Astrophysics Flatiron Institute New York NY USA Department of Astrophysical Sciences Princeton University Princeton NJ USA Department of Physics Carnegie Mellon University Pittsburgh PA USA Department of Physics and Center for Data Science New York University New York NY USA Google DeepMind London UK Department of Computer Science and Technology University of Cambridge Cambridge UK Microsoft Research Beijing China Department of Biomedical Informatics Harvard Medical School Boston MA USA Broad Institute of MIT and Harvard Cambridge MA USA Harvard Data Science Initiative Cambridge MA USA Kempner Institute for the Study of Natural and Artificial Intelligence Harvard University Cambridge MA USA Department of Systems Biology Harvard Medical School Boston MA USA Deep Forest Sciences Palo Alto CA USA BioMap Beijing China Mo

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THE ARCTIC

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Bulletin of the American Meteorological Society 2024年第8期105卷 S277-S330页

作者： Druckenmiller, M.L. Thoman, R.L. Moon, T.A. National Snow and Ice Data Center Cooperative Institute for Research in Environmental Sciences University of Colorado Boulder Boulder Colorado International Arctic Research Center University of Alaska Fairbanks Fairbanks Alaska National Snow and Ice Data Center Cooperative Institute for Research in Environmental Sciences University of Colorado Boulder Colorado Section for Glaciers Ice and Snow Norwegian Water Resources and Energy Directorate Oslo Norway School of Informatics Computing and Cyber Systems Northern Arizona University Flagstaff Arizona Biospherical Instruments Inc. San Diego California Geophysical Institute University of Alaska Fairbanks Fairbanks Alaska Plant Soils and Climate Department Utah State University Logan Utah Norwegian Institute for Nature Research Trondheim Norway FRAM – High North Research Centre for Climate and the Environment Tromsø Norway Geological Survey of Denmark and Greenland (GEUS) Copenhagen Denmark NOAA/NWS Alaska Region Anchorage Alaska Alaska Native Tribal Health Consortium Anchorage Alaska Geological Survey of Canada Natural Resources Canada Ottawa Canada NOAA Chemical Sciences Laboratory Boulder Colorado Arctic Geophysics Department University Centre in Svalbard Longyearbyen Norway Geology Department University Centre in Svalbard Longyearben Norway Centre National de Recherches Météorologiques Météo-France/CNRS Toulouse France Climate Research Division Environment and Climate Change Canada Toronto Canada Norwegian Polar Institute Fram Centre Tromsø Norway Danish Meteorological Institute Copenhagen Denmark Department of Physics University of Toronto Toronto Canada Department of Environmental Sciences University of Virginia Charlottesville Virginia Department of Geographical Sciences University of Maryland College Park Maryland University of Liège Liège Belgium Environment and Climate Change Canada Toronto Canada Northern Rocky Mountain Science Center U.S. Geological Survey Bozeman Montana Arctic C

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The 2022 report of the Lancet Countdown on health and climate change: health at the mercy of fossil fuels (vol 400, pg 1619, 2022)

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LANCET 2022年第10365期400卷 1766-1766页

作者： Romanello, M. Di Napoli, C. Drummond, P. Institute for Global Health University College London London UK School of Agriculture Policy and Development University of Reading Reading UK Institute for Sustainable Resources University College London London UK Department of Global Health Centre for Health and the Global Environment University of Washington Seattle WA USA UCL Energy Institute University College London London UK Department of Health Sciences University of York York UK Department of Meteorology University of Reading Reading UK Institute for Risk and Disaster Reduction University College London London UK School of Earth and Environment University of Leeds Leeds UK Centre on Climate Change and Planetary Health London School of Hygiene & Tropical Medicine London UK School of Population Health University of Melbourne Melbourne VIC Australia Department of Earth System Science Tsinghua University Beijing China Mercator Research Institute on Global Commons and Climate Change Berlin Germany Department of Environment Climate Change and Health World Health Organization Geneva Switzerland Institute of Environmental Sciences University of Geneva Geneva Switzerland Cardiovascular Epidemiology Unit Department of Public Health & Primary Care University of Cambridge Cambridge UK School of Government University of Birmingham Birmingham UK Economic Analysis of Climate Impacts and Policy Division Centro Euro-Mediterraneo sui Cambiamenti Climatici Venice Italy Institute for Environmental Design and Engineering University College London London UK Natural Resources Institute University of Greenwich London UK Department of Environmental Health Sciences and Yale Center on Climate Change and Health Yale University New Haven CT USA Department of Civil and Environmental Engineering Northeastern University Boston MA USA Department of Fish and Wildlife Conservation Virginia Polytechnic Institute and State University Blacksburg VA USA Department of Geography University College London London UK NU

With advancements in the science of detection and attribution studies, the influence of climate change over many events has now been quantified. Because of the rapidly increasing temperatures, vulnerable populations (adults older than 65 years, and children younger than one year of age) were exposed to 3·7 billion more heatwave days in 2021 than annually in 1986–2005 (indicator 1.1.2), and heat-related deaths increased by 68% between 2000–04 and 2017–21 (indicator 1.1.5), a death toll that was significantly exacerbated by the confluence of the COVID-19 pandemic. Despite the local cooling and overall health benefits of urban greenspaces, only 277 (27%) of 1038 global urban centres were at least moderately green in 2021 (indicator 2.2.3), and the number of households with air conditioning increased by 66% from 2000 to 2020, a maladaptive response that worsens the energy crisis and further increases urban heat, air pollution, and greenhouse gas emissions. [...]millions of people do not have access to the energy needed to keep their homes at healthy temperatures, preserve food and medication, and meet the seventh Sustainable Development Goal (to ensure access to affordable, reliable, sustainable, and modern energy for all). Aggravating this situation even further, governments continue to incentivise fossil fuel production and consumption: 69 (80%) of 86 countries reviewed had net-negative carbon prices (ie, provided a net subsidy to fossil fuels) for a net total of US$400 billion

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An Early Stage Researcher's Primer on Systems Medicine Terminology

Network and Systems Medicine

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Network and Systems Medicine 2021年第1期4卷 2-50页

作者： Zanin, Massimiliano Aitya, Nadim A.A. Basilio, José Baumbach, Jan Benis, Arriel Behera, Chandan K. Bucholc, Magda Castiglione, Filippo Chouvarda, Ioanna Comte, Blandine Dao, Tien-Tuan Ding, Xuemei Pujos-Guillot, Estelle Filipovic, Nenad Finn, David P. Glass, David H. Harel, Nissim Iesmantas, Tomas Ivanoska, Ilinka Joshi, Alok Boudjeltia, Karim Zouaoui Kaoui, Badr Kaur, Daman Maguire, Liam P. McClean, Paula L. McCombe, Niamh De Miranda, João Luís Moisescu, Mihnea Alexandru Pappalardo, Francesco Polster, Annikka Prasad, Girijesh Rozman, Damjana Sacala, Ioan Sanchez-Bornot, Jose M. Schmid, Johannes A. Sharp, Trevor Solé-Casals, Jordi Spiwok, Vojtěch Spyrou, George M. Stalidzans, Egils Stres, Blaa Sustersic, Tijana Symeonidis, Ioannis Tieri, Paolo Todd, Stephen Van Steen, Kristel Veneva, Milena Wang, Da-Hui Wang, Haiying Wang, Hui Watterson, Steven Wong-Lin, Kongfatt Yang, Su Zou, Xin Schmidt, Harald H.H.W. Centro de Tecnología Biomédica Universidad Politécnica de Madrid Madrid Spain Intelligent Systems Research Centre School of Computing Engineering and Intelligent Systems Ulster University Ulster United Kingdom Center for Physiology and Pharmacology Institute of Vascular Biology and Thrombosis Research Medical University of Vienna Vienna Austria TUM School of Life Sciences Weihenstephan Technical University of Munich Freising Germany Holon Israel CNR National Research Council IAC Institute for Applied Computing Rome Italy Lab of Computing Medical Informatics and Biomedical Imaging Technologies School of Medicine Aristotle University of Thessaloniki Thessaloniki Greece Université Clermont Auvergne INRAE UNH Plateforme d'Exploration du Métabolisme MetaboHUB Clermont Clermont-Ferrand France Université de Technologie de Compiègne Compiègne France Labex MS2T Control of Technological Systems-of-Systems CNRS and Université de Technologie de Compiègne Compiègne France Faculty of Engineering University of Kragujevac Kragujevac Serbia Kragujevac Serbia Steinbeis Advanced Risk Technologies Institute Doo Kragujevac Kragujevac Serbia Pharmacology and Therapeutics School of Medicine Galway Neuroscience Centre National University of Ireland Galway Ireland School of Computing Ulster University Ulster United Kingdom Holon Israel Department of Mathematics and Natural Sciences Kaunas University of Technology Kaunas Lithuania Faculty of Computer Science and Engineering Ss. Cyril and Methodius University Skopje Macedonia Medicine Faculty Université Libre de Bruxelles CHU de Charleroi Charleroi Belgium Northern Ireland Centre for Stratified Medicine Biomedical Sciences Research Institute Ulster University Ulster United Kingdom Escola Superior de Tecnologia e Gestão Instituto Politécnico de Portalegre Portalegre Portugal Instituto Superior Técnico Universidade de Lisboa Lisboa Portugal Faculty of Automatic Control and Computers University Politehnica of B

Background: Systems Medicine is a novel approach to medicine, that is, an interdisciplinary field that considers the human body as a system, composed of multiple parts and of complex relationships at multiple levels, and further integrated into an environment. Exploring Systems Medicine implies understanding and combining concepts coming from diametral different fields, including medicine, biology, statistics, modeling and simulation, and data science. Such heterogeneity leads to semantic issues, which may slow down implementation and fruitful interaction between these highly diverse fields. Methods: In this review, we collect and explain more than100 terms related to Systems Medicine. These include both modeling and data science terms and basic systems medicine terms, along with some synthetic definitions, examples of applications, and lists of relevant references. Results: This glossary aims at being a first aid kit for the Systems Medicine researcher facing an unfamiliar term, where he/she can get a first understanding of them, and, more importantly, examples and references for digging into the topic. © Massimiliano Zanin et al., 2021;Published by Mary Ann Liebert, Inc. 2021.

关键词： Semantics

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The Multi-modality Cell Segmentation Challenge: Towards Universal Solutions

arXiv

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arXiv 2023年

作者： Ma, Jun Xie, Ronald Ayyadhury, Shamini Ge, Cheng Gupta, Anubha Gupta, Ritu Gu, Song Zhang, Yao Lee, Gihun Kim, Joonkee Lou, Wei Li, Haofeng Upschulte, Eric Dickscheid, Timo de Almeida, José Guilherme Wang, Yixin Han, Lin Yang, Xin Labagnara, Marco Gligorovski, Vojislav Scheder, Maxime Rahi, Sahand Jamal Kempster, Carly Pollitt, Alice Espinosa, Leon Mignot, Tâm Middeke, Jan Moritz Eckardt, Jan-Niklas Li, Wangkai Li, Zhaoyang Cai, Xiaochen Bai, Bizhe Greenwald, Noah F. Van Valen, David Weisbart, Erin Cimini, Beth A. Cheung, Trevor Brück, Oscar Bader, Gary D. Wang, Bo Peter Munk Cardiac Centre University Health Network TorontoON Canada Department of Laboratory Medicine and Pathobiology University of Toronto TorontoON Canada Vector Institute TorontoON Canada Department of Molecular Genetics University of Toronto TorontoON Canada Donnelly Centre University of Toronto TorontoON Canada Princess Margaret Cancer Centre University Health Network TorontoON Canada School of Medicine and Pharmacy Ocean University of China Qingdao China New Delhi India Laboratory Oncology Dr. BRA-IRCH All India Institute of Medical Sciences New Delhi India Department of Image Reconstruction Nanjing Anke Medical Technology Co. Ltd. Nanjing China Shanghai Artificial Intelligence Laboratory Shanghai China Graduate School of AI KAIST Seoul Korea Republic of Shenzhen Research Institute of Big Data Shenzhen China Shenzhen China Helmholtz AI Research Center Jülich Jülich Germany Faculty of Mathematics and Natural Sciences Institute of Computer Science Heinrich Heine University Düsseldorf Düsseldorf Germany Hinxton United Kingdom Champalimaud Foundation - Centre for the Unknown Lisbon Portugal Department of Bioengineering Stanford University Palo AltoCA United States Tandon School of Engineering New York University New YorkNY United States School of Biomedical Engineering Health Science Center Shenzhen University Shenzhen China Lausanne Switzerland School of Biological Sciences University of Reading Reading United Kingdom Laboratoire de Chimie Bactérienne CNRS Université Aix Marseille UMR Institut de Microbiologie de la Méditerranée Marseille France Department of Internal Medicine I University Hospital Dresden Technical University Dresden Dresden Germany Else Kroener Fresenius Center for Digital Health Technical University Dresden Dresden Germany Department of Automation University of Science and Technology of China Hefei China Institute of Advanced Technology University of Science and Technology of China Hefei Chi

Cell segmentation is a critical step for quantitative single-cell analysis in microscopy images. Existing cell segmentation methods are often tailored to specific modalities or require manual interventions to specify hyper-parameters in different experimental settings. Here, we present a multi-modality cell segmentation benchmark, comprising over 1500 labeled images derived from more than 50 diverse biological experiments. The top participants developed a Transformer-based deep-learning algorithm that not only exceeds existing methods but can also be applied to diverse microscopy images across imaging platforms and tissue types without manual parameter adjustments. This benchmark and the improved algorithm offer promising avenues for more accurate and versatile cell analysis in microscopy imaging. © 2023, CC BY-NC-ND.

关键词： Deep learning

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How to Build the Virtual Cell with Artificial Intelligence: Priorities and Opportunities

arXiv

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arXiv 2024年

作者： Bunne, Charlotte Roohani, Yusuf Rosen, Yanay Gupta, Ankit Zhang, Xikun Roed, Marcel Alexandrov, Theo AlQuraishi, Mohammed Brennan, Patricia Burkhardt, Daniel B. Califano, Andrea Cool, Jonah Dernburg, Abby F. Ewing, Kirsty Fox, Emily B. Haury, Matthias Herr, Amy E. Horvitz, Eric Hsu, Patrick D. Jain, Viren Johnson, Gregory R. Kalil, Thomas Kelley, David R. Kelley, Shana O. Kreshuk, Anna Mitchison, Tim Otte, Stephani Shendure, Jay Sofroniew, Nicholas J. Theis, Fabian Theodoris, Christina V. Upadhyayula, Srigokul Valer, Marc Wang, Bo Xing, Eric Yeung-Levy, Serena Zitnik, Marinka Karaletsos, Theofanis Regev, Aviv Lundberg, Emma Leskovec, Jure Quake, Stephen R. Department of Computer Science Stanford University StanfordCA United States Genentech South San FranciscoCA United States Chan Zuckerberg Initiative Redwood CityCA United States School of Computer and Communication Sciences School of Life Sciences EPFL Lausanne Switzerland Arc Institute Palo AltoCA United States KTH Royal Institute of Technology Science for Life Laboratory Department of Protein Science Stockholm Sweden Department of Bioengineering Stanford University StanfordCA United States Department of Pharmacology University of California San DiegoCA United States Department of Bioengineering University of California San DiegoCA United States Department of Systems Biology Columbia University New YorkNY United States Cellarity SomervilleMA United States Vagelos College of Physicians and Surgeons Columbia University Irving Medical Center New YorkNY United States Chan Zuckerberg Biohub New YorkNY United States Department of Molecular and Cell Biology University of California Berkeley BerkeleyCA United States Department of Statistics Stanford University StanfordCA United States Chan Zuckerberg Biohub San Francisco CA United States Chan Zuckerberg Institute for Advanced Biological Imaging Redwood CityCA United States Department of Bioengineering University of California BerkeleyCA United States Microsoft Research RedmondWA United States Center for Computational Biology University of California Berkeley BerkeleyCA United States Google Research Mountain ViewCA United States NewLimit San FranciscoCA United States Schmidt city United States Calico Life Sciences LLC San FranciscoCA United States Chan Zuckerberg Biohub Chicago IL United States Northwestern University EvanstonIL United States Cell Biology and Biophysics Unit European Molecular Biology Laboratory Heidelberg Germany Department of Systems Biology Harvard Medical School BostonMA United States Department of Genome Sciences University of Washington SeattleWA Unit

The cell is arguably the most fundamental unit of life and is central to understanding biology. Accurate modeling of cells is important for this understanding as well as for determining the root causes of disease. Recent advances in artificial intelligence (AI), combined with the ability to generate large-scale experimental data, present novel opportunities to model cells. Here we propose a vision of leveraging advances in AI to construct virtual cells, high-fidelity simulations of cells and cellular systems under different conditions that are directly learned from biological data across measurements and scales. We discuss desired capabilities of such AI Virtual Cells, including generating universal representations of biological entities across scales, and facilitating interpretable in silico experiments to predict and understand their behavior using Virtual Instruments. We further address the challenges, opportunities and requirements to realize this vision including data needs, evaluation strategies, and community standards and engagement to ensure biological accuracy and broad utility. We envision a future where AI Virtual Cells help identify new drug targets, predict cellular responses to perturbations, as well as scale hypothesis exploration. With open science collaborations across the biomedical ecosystem that includes academia, philanthropy, and the biopharma and AI industries, a comprehensive predictive understanding of cell mechanisms and interactions has come into reach. © 2024, CC BY.

关键词： Virtual environments

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Generalized word shift graphs: A method for visualizing and explaining pairwise comparisons between texts

arXiv

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arXiv 2020年

作者： Gallagher, Ryan J. Frank, Morgan R. Mitchell, Lewis Schwartz, Aaron J. Reagan, Andrew J. Danforth, Christopher M. Dodds, Peter Sheridan Network Science Institute Northeastern University BostonMA02115 United States Department of Informatics and Networked Systems University of Pittsburgh PittsburghPA15260 United States Connection Science Massachusetts Institute of Technology CambridgeMA02139 United States Institute for Human-Centered Artifical Intelligence Stanford University StanfordCA94305 United States School of Mathematical Sciences The University of Adelaide SA5005 Australia Computational Story Lab Vermont Complex Systems Center Vermont Advanced Computing Core The University of Vermont BurlingtonVT05401 United States Gund Institute for Environment & Rubenstein School of Environment and Natural Resources The University of Vermont BurlingtonVT05401 United States Department of Ecology and Evolutionary Biology University of Colorado at Boulder BoulderCO80309 United States MassMutual Data Science AmherstMA01002 United States MassMutual Center of Excellence for Complex Systems and Data Science Department of Mathematics and Statistics The University of Vermont BurlingtonVT05401 United States

A common task in computational text analyses is to quantify how two corpora differ according to a measurement like word frequency, sentiment, or information content. However, collapsing the texts' rich stories into a single number is often conceptually perilous, and it is difficult to confidently interpret interesting or unexpected textual patterns without looming concerns about data artifacts or measurement validity. To better capture fine-grained differences between texts, we introduce generalized word shift graphs, visualizations which yield a meaningful and interpretable summary of how individual words contribute to the variation between two texts for any measure that can be formulated as a weighted average. We show that this framework naturally encompasses many of the most commonly used approaches for comparing texts, including relative frequencies, dictionary scores, and entropy-based measures like the Kullback-Leibler and Jensen-Shannon divergences. Through several case studies, we demonstrate how generalized word shift graphs can be flexibly applied across domains for diagnostic investigation, hypothesis generation, and substantive interpretation. By providing a detailed lens into textual shifts between corpora, generalized word shift graphs help computational social scientists, digital humanists, and other text analysis practitioners fashion more robust scientific narratives. Copyright © 2020, The Authors. All rights reserved.

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A fine-grained perspective on the robustness of global cargo ship transportation networks

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Journal of Geographical sciences 2018年第7期28卷 881-899页

作者：彭澎程诗奋陈金海廖梦迪吴琳刘希亮陆锋 State Key Laboratory of Resources and Environmental Information System Institute of Geographic Sciences and Natural Resources Research CAS University of Chinese Academy of Sciences Navigation Aids Technology Research Center of Jimei University National & Local Joint Engineering Research Center for Marine Navigation Aids Services College of Geomatics Shandong University of Science and Technology Institute of Computing Technology CAS Fujian Collaborative Innovation Center for Big Data Applications in Governments Jiangsu Center for Collaborative Innovation in Geographical Information Resource Development and Application

The robustness of cargo ship transportation networks is essential to the stability of the world trade system. The current research mainly focuses on the coarse-grained, holistic cargo ship transportation network while ignoring the structural diversity of different sub-networks. In this paper, we evaluate the robustness of the global cargo ship transportation network based on the most recent Automatic Identification System（AIS） data available. First, we subdivide three typical cargo ship transportation networks（i.e., oil tanker, container ship and bulk carrier） from the original cargo ship transportation network. Then, we design statistical indices based on complex network theory and employ four attack strategies, including random attack and three intentional attacks（i.e., degree-based attack, betweenness-based attack and flux-based attack） to evaluate the robustness of the three typical cargo ship transportation networks. Finally, we compare the integrity of the remaining ports of the network when a small proportion of ports lose their function. The results show that 1） compared with the holistic cargo ship transportation network, the fine-grain-based cargo ship transportation networks can fully reflect the pattern and process of global cargo transportation; 2） different cargo ship networks behave heterogeneously in terms of their robustness, with the container network being the weakest and the bulk carrier network being the strongest; and 3） small-scale intentional attacks may have significant influence on the integrity of the container network but a minor impact on the bulk carrier and oil tanker transportation networks. These conclusions can help improve the decision support capabilities in maritime transportation planning and emergency response and facilitate the establishment of a more reliable maritime transportation ***： The robustness of cargo ship transportation networks is essential to the stability of the world trade system. The current resear

关键词： complex network fine-grained cargo ship transportation network robustness automatic identification system

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