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Artificial intelligence is transforming the study of proteins:Structures and beyond

hLife 2025年第4期3卷 162-163页

作者： Haiyan Liu Quan Chen Yufeng Liu MOE Key Laboratory for Membraneless Organelles and Cellular Dynamics School of Life SciencesDivision of Life Sciences and MedicineUniversity of Science and Technology of ChinaAnhuiChina Biomedical Sciences and Health Laboratory of Anhui Province Anhui Basic Discipline Research Center of Artificial Intelligence Biotechnology and Synthetic BiologyUniversity of Science and Technology of ChinaAnhuiChina School of Biomedical Engineering Suzhou Institute for Advanced ResearchUniversity of Science and Technology of ChinaJiangsuChina Department of Rheumatology and Immunology The First Affiliated Hospital of USTCDivision of Life Sciences and MedicineHefei National Research Center for Physical Sciences at the MicroscaleCenter for Advanced Interdisciplinary Science and Biomedicine of IHMUniversity of Science and Technology of ChinaAnhuiChina

Recently,the Royal Swedish Academy of sciences announced that one-half of the 2024 Nobel Prize in Chemistry was awarded to David Baker for computational protein design,and the other half was awarded jointly to Demis Hassabis and John Jumper for protein structure *** are the molecule tools of *** carry out their functions,many proteins need to fold into particular three-dimensional(3D)structures,which are programmed by the amino acid sequences of the proteins[1].The goal of protein structure prediction is to predict the 3D structures from given amino acid ***,protein design aims to identify amino acid sequences that achieve desired structural or functional goals.

关键词： amino acid sequences proteindesign computationalproteindesign aminoacids computational protein designand artificialintelligence proteinstructureprediction protein structure predictionproteins

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Archer: Adaptive Memory Compression with Page-Association-Rule Awareness for High-Speed Response of Mobile Devices 23

Archer: Adaptive Memory Compression with Page-Association-Ru...

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23rd USENIX Conference on File and Storage Technologies, FAST 2025

作者： Li, Changlong Zhu, Zongwei Wang, Chao Liu, Fangming Xu, Fei Sha, Edwin H.-M. Zhou, Xuehai School of Computer Science and Technology East China Normal University China Jianghuai Advance Technology Center Hefei230026 China MoE Engineering Research Center of Hardware/Software Co-Design Technology and Application China School of Software Engineering University of Science and Technology of China Hefei230026 China Suzhou Institute for Advanced Research University of Science and Technology of China Suzhou215123 China Huazhong University of Science and Technology China Peng Cheng Laboratory China

ISBN: (纸本)9781939133458

In mobile systems, memory can be compressed page-by-page to save space. This approach is widely adopted because memory data is accessed by page. However, this paper shows that the system response speed is significantly limited by page-grained compression. In this paper, we observe that approximately a quarter of anonymous memory pages are highly correlated, even though the association is implicit. Inspired by this, we propose Archer, an association-rule-aware memory compression framework in mobile systems. Archer demonstrates that memory in mobile devices should be compressed using flexible granularity, rather than relying solely on traditional page compression. To further integrate association-rule mining techniques into system design, we redesign the LRU mechanism and propose an adaptive memory compression region. Experimental results show that the average app launching speed is 1.55x faster when enabling Archer, and the average photographic speed and frame rate increase by 1.42x and 1.31x, respectively, compared to the state-of-the-art. © 2025 FAST. All Rights Reserved.

关键词： Portable equipment

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Newly-modeled graphene-based ternary nanocomposite for the magnetophotocatalytic reduction of CO_(2) with electrochemical performance

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Frontiers of Chemical science and engineering 2022年第10期16卷 1438-1459页

作者： Zambaga Otgonbayar Kwang Youn Cho Chong-Hun Jung Won-Chun Oh Department of Advanced Materials Science&Engineering Hanseo UniversitySeosan-Si 31962Korea Korea Institutes of Ceramic Engineering and Technology Jinju-Si 660031Korea Decommissioning Technology Research Division Korea Atomic Energy Research InstituteDaejeon 305-600Korea Anhui International Joint Research Center for Nano Carbon-based Materials and Environmental Health College of Materials Science and EngineeringAnhui University of Science&TechnologyHuainan 232001China

The development of CO_(2)into hydrocarbon fuels has emerged as a green method that could help mitigate global *** novel structured photocatalyst is a promising material for use in a photocatalytic and magneto-electrochemical method that fosters the reduction of CO_(2)by suppressing the recombination of electron−hole pairs and effectively transferring the electrons to the surface for the chemical reaction of CO_(2)*** our study,we have developed a novel-structured AgCuZnS_(2)–graphene–TiO_(2)to analyze its catalytic activity toward the selective evolution of CO_(2).The selectivity of each nanocomposite substantially enhanced the activity of the AgCuZnS_(2)–graphene–TiO_(2)ternary nanocomposite due to the successful interaction,and the selectivity of the final product was improved to a value 3 times higher than that of the pure AgCuZnS_(2)and 2 times higher than those of AgCuZnS_(2)–graphene and AgCuZnS_(2)–TiO_(2)under ultraviolet(UV)-light(λ=254 nm)irradiation in the photocatalytic *** electrochemical CO_(2)reduction test was also conducted to analyze the efficacy of the AgCuZnS_(2)–graphene–TiO_(2)when used as a working electrode in laboratory electrochemical *** electrochemical process was conducted under different experimental conditions,such as various scan rates(mV·s^(–1)),under UV-light and with a 0.07 T *** evolution of CO_(2)substantially improved under UV-light(λ=254 nm)and with 0.07 T magnetic-core treatment;these improvements were attributed to the facts that the UV-light activated the electron-transfer pathway and the magnetic core controlled the pathway of electrontransmission/prevention to protect it from chaotic electron *** all tested nanocomposites,AgCuZnS_(2)–graphene–TiO_(2)absorbed the CO_(2)most strongly and showed the best ability to transfer the electron to reduce the CO_(2)to *** believe that our newly-modeled ternary nanocomposite opens up new opportunities for the evolution of C

关键词： ternary nanocomposite photocatalytic electrochemical CO_(2) reduction UV-light magnetic core

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Novel Synthesis of Ca²⁺-Doped MgAl2O3-G-SiO2 Mesoporous Nanospheres toward Sensing Effects for Selective Electrochemical Performance of Azithromycin (vol 27, pg 831, 2022)

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BIOTECHNOLOGY AND BIOPROCESS engineering 2022年第6期27卷 831 - 842页

作者： Cho, Kwang Youn Korea Institutes of Ceramic Engineering and Technology Jinju South Korea Decommissioning Technology Research Division Korea Atomic Energy Research Institute Daejeon South Korea Anhui International Joint Research Center for Nano Carbon-based Materials and Environmental Health College of Materials Science and Engineering Anhui University of Science & Technology Huainan China Department of Advanced Materials Science & Engineering Hanseo University Seosan South Korea

Azithromycin is one of the most concentrated antibiotics in wastewater, as conventional wastewater treatment facilities cannot eliminate this antibiotic from the environment. In this study, we proposed using a graphene-based mesoporous electrochemical sensor to take simultaneous voltammetric measurements of azithromycin. Because of its homogeneous pore structure, large surface area, quick electron transfer rate, and superior biocompatibility, magnesium-containing mesoporous silica is a promising resource for the immobilization of biomolecule matrix. Ca2+-doped MgAl2O3-G-SiO2 was used to build an amperometric biosensor through a self-assembly process. At room temperature in a buffer solution with a pH of 7.0, the modified electrode under ideal circumstances displayed good azithromycin sensing activity, a linear range of 1 to 5 µmolL−1, a detection limit of 0.5 µmolL−1, and a reaction time of less than 2 sec. An array of morphological analysis methods—including X-ray diffraction methos, scanning electron microscopy, Brunauer-Emmett-Teller method, high resolution tunneling electron microscopy, Raman, diffuse reflectance spectroscopy, and X-ray photoelectron spectroscopy—was used to examine the nanocomposite’s crystalline structure. Cyclic voltammetry was used to determine the sensing effects in the mesoporous active nanomaterials. Finally, it was found that the electrochemical sensor performed as an ideal biosensor that was able to detect azithromycin in the presence of several interfering species with high stability, selectivity, and repeatability.

关键词： azithromycin electrochemical performance high specific surface area mesoporous nanosphere sensing effects

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3D/4D additive-subtractive manufacturing of heterogeneous ceramics

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Journal of Materials science & Technology 2024年第34期201卷 210-221页

作者： Guo Liu Xinya Lu Xiaofeng Zhang Yan Zhao Shenghui Yi Jingjun Xu Yuqi Zhan Jianan Yin Chengcheng Feng Zhifeng Zhou Peiyu Wang Zhou Chen Yunhu He Siyao Chen Pengchao Liu Jun Zuo Yu Dai Jian Wu Sida Liu Jian Lu Centre for Advanced Structural Materials City University of Hong Kong Shenzhen Research InstituteGreater Bay Joint DivisionShenyang National Laboratory for Materials ScienceShenzhen 518057China CityU-Shenzhen Futian Research Institute Shenzhen 518045China Hong Kong Branch of National Precious Metals Material Engineering Research Center City University of Hong KongHong Kong 999077China Department of Mechanical Engineering City University of Hong KongHong Kong 999077China Department of Materials Science and Engineering City University of Hong KongHong Kong 999077China National Engineering Laboratory for Modern Materials Surface Engineering Technology&The Key Lab of Guangdong for Modern Surface Engineering Technology Institute of New MaterialsGuangdong Academy of ScienceGuangzhou 510650China State Key Laboratory of Advanced Design and Manufacturing for Vehicle Body College of Mechanical and Vehicle EngineeringHunan UniversityChangsha 410082China Faculty of Materials Science Shenzhen MSU-BIT UniversityShenzhen 518100China Shenyang National Laboratory for Materials Science Institute of Metal ResearchChinese Academy of SciencesShenyang 110016China School of Physics and Materials Nanchang UniversityNanchang 330031China

The manufacturing of heterogeneous high-temperature material components is challenging for use in practical ***-dimensional(3D)printing provides solutions to programmable constructing ceramic ***,the development of heterogeneous ceramics is limited by low flexibil-ity of heterogeneity,geometrical complexity,structural resolution,manufacturing efficiency,and mate-rial *** this study,we demonstrated flexible and rapid approaches for fabricating complicated and precise heterogeneous ceramics by shape-changing(4D)or shape-keeping(3D)additive-subtractive manufacturing(ASM)*** shape-changing strategy for heterogeneous ceramics was achieved by global ceramization of heterogeneous precursors,while the shape-keeping strategy for heterogeneous ceramics was achieved by local receramization of homogeneous *** element analysis(FEA)simulations of the influence of the thermal shrinkage dominant in the shape-changing strategy on the shape deformation of heterogeneous ceramics could be valuable predictions of the experimental *** 3D/4D ASM methods are generic for high-temperature materials and extendable to metallic and dia-mond materials.

关键词： 3D/4D printing Additive-subtractive manufacturing Heterogeneous ceramics Elastomer-derived ceramics Local receramization

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Experimental observation of coherent-perfect-absorber and laser points in anti-PT symmetry

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Physical Review A 2024年第3期110卷 033504页

作者： Minye Yang Qi Zhong Zhilu Ye Şahin K. Özdemir Mohamed Farhat Ramy El-Ganainy Pai-Yen Chen State Key Laboratory for Manufacturing Systems Engineering School of Electronic Science and Engineering Department of Electrical and Computer Engineering Department of Engineering Science and Mechanics The Materials Research Institute Computer Electrical and Mathematical Science and Engineering Division Department of Physics Henes Center for Quantum Phenomena

The coexistence of coherent perfect absorber and laser or amplifier (CPAL) point is a peculiar spectral singularity associated with the scattering matrices of non-Hermitian systems. While the potential of CPAL systems for sensing application has been highlighted recently, the extreme sensitivity of parity-time (PT)-symmetric CPAL devices to the input signal deviations has so far impeded their practical utilization. Here we explore a strategy for implementing CPAL circuits by exploiting another type of non-Hermitian symmetry, namely anti-PT (APT) symmetry. We demonstrate that the condition for building CPAL in our proposed APT-symmetric electronic circuits additionally requires parity symmetry, which simplifies the circuit design and implementation. Additionally, we show that this newly proposed structure is 1.85 times more robust compared to previous CPAL devices studied in the literature.

关键词： Noise Quantum sensing Non-Hermitian systems PT-symmetry

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Optimal Trace Codes and Their Self-orthogonality

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IEEE Transactions on Information Theory 2025年第6期71卷 4267-4283页

作者： Hyun, Jong Yoon Hu, Zhao Cheon, Eun Ju Wu, Yansheng Konkuk University Glocal Campus 268 Chungwon-daero Chungcheongbuk-do Chungju-si27478 Korea Republic of Hubei University School of Cyber Science and Technology Wuhan430062 China Hubei Provincial Engineering Research Center of Intelligent Connected Vehicle Network Security Wuhan430062 China Gyeongsang National University Department of Mathematics RINS Jinju52828 Korea Republic of Nanjing University of Posts and Telecommunications School of Computer Science Nanjing210023 China Jiangsu Cryptographic Technology Engineering Research Center Nanjing210023 China

The primary objective of this paper is the construction of optimal codes with self-orthogonality that can be used to construct quantum codes. Recently, Ding and Heng explored subfield codes, which can be viewed as trace codes. In this paper, we focus on investigating self-orthogonal optimal trace codes. First, we provide a novel description of trace codes by choosing suitable defining sets. Second, we determine the parameters of the codes and their trace codes whose defining sets are disjoint union of some affine subspaces in both non-projective cases and projective-cases. This result extends the main findings in (Hu, Li, Zeng, Wang, Tang, IEEE Trans. Inform. Theory, 68(7): 4408-4421, 2022). Third, we compute the parameters of trace codes for MacDonald codes, including the first order Reed-Muller codes and simplex codes as special cases. Finally, we examine their self-orthogonality and distance-optimality to find several classes of self-orthogonal Griesmer codes. Additionally, we resolve a problem proposed by Ding and Heng as a byproduct. © 1963-2012 IEEE.

关键词： Turbo codes

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A Security Enhanced Chaotic-Map-Based Authentication Protocol for Internet of Drones

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IEEE Internet of Things Journal 2024年第12期11卷 22301-22309页

作者： Mahmood, Khalid Ghaffar, Zahid Farooq, Muhammad Yahya, Khalid Das, Ashok Kumar Chaudhry, Shehzad Ashraf National Yunlin University Of Science And Technology Graduate School Of Intelligent Data Science Douliu64002 Taiwan National Yunlin University Of Science And Technology Graduate School Of Engineering Science And Technology Douliu64002 Taiwan Abu Dhabi University Department Of Mathematics And Statistics College Of Arts And Sciences Abu Dhabi United Arab Emirates Istanbul Gelisim University Department Of Electrical And Electronics Engineering Istanbul34310 Turkey Sabratah University Department Of Electrical Engineering Faculty Of Engineering Regdalen Libya Center For Security Theory And Algorithmic Research Hyderabad500 032 India Abu Dhabi University Department Of Computer Science And Information Technology College Of Engineering Abu Dhabi United Arab Emirates Nisantasi University Faculty Of Engineering And Architecture Department Of Software Engineering Istanbul34398 Turkey

The Internet of Drones (IoD) extends the capabilities of unmanned aerial vehicles, enabling them to participate in a connected network. In IoD infrastructure, drones communicate not only among themselves but also with users and a control center. This interconnected communication framework holds promise for various applications, from collaborative decision-making to real-time data exchange. However, the expansion of communication in IoD also introduces new challenges, particularly in terms of security, privacy and authentication. Unfortunately, the current authentication protocols are inadequate in offering robust security features against various attacks in the IoD environment. To address these security issues and limitations, we proposed a secure protocol for the IoD environment using chaotic maps and hash functions. In addition, we also employed a physically unclonable function in the development of the proposed protocol. We assess the security of the protocol through both informal and formal security analysis. The formal security analysis is conducted through a widely used random or real (RoR) model. The informal analysis shows the rigorous security features against various attacks, such as masquerading, anonymity violation, and physical cloning attacks. Moreover, we compare the performance of the devised protocol with similar existing protocols across important performance parameters, such as communication overhead, computation overhead, and security features. The devised protocol provides a 67.86% and 17.80% reduction in computation and communication overheads, respectively, as compared to related protocols. The analysis demonstrates the proposed protocol's capacity to support secure communication in the IoD environment and satisfy desirable security attributes. © 2014 IEEE.

关键词： Drones

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Structural insights into asymmetric activation of the calcium-sensing receptor-Gq complex

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细胞研究（英文版） 2024年第2期34卷 169-172页

作者： Shenglong Ling Xianyu Meng Yuan Zhang Zhemin Xia Yingxin Zhou Fan Yang Pan Shi Chaowei Shi Changlin Tian Department of Endocrinology Institute of Endocrine and Metabolic DiseaseThe First Affiliated Hospital of USTCDivision of Life Sciences and MedicineJoint Center for Biological Analytical ChemistryAnhui Engineering Laboratory of Peptide DrugAnhui Laboratory of Advanced Photonic Science and TechnologyUniversity of Science and Technology of ChinaHefeiAnhuiChina Department of Endocrinology Institute of Endocrine and Metabolic DiseaseThe First Affiliated Hospital of USTCDivision of Life Sciences and MedicineJoint Center for Biological Analytical ChemistryAnhui Engineering Laboratory of Peptide DrugAnhui Laboratory of Advanced Photonic Science and TechnologyUniversity of Science and Technology of ChinaHefeiAnhuiChina The Anhui Provincial Key Laboratory of High Magnetic Resonance Image High Magnetic Field LaboratoryChinese Academy of SciencesHefeiAnhuiChina Beijing Life Science Academy BeijingChina School of Biomedical Engineering Suzhou Institute for Advanced ResearchUniversity of Science and Technology of ChinaSuzhouJiangsuChina

Dear Editor, The human calcium-sensing receptor(CaSR)is a class C G protein-coupled receptor(GPCR)responsible for maintaining Ca2+home-ostasis in blood.12 in normal physiological processes,in response to extracellular stimuli,CaSR can activate multiple intracellular signaling pathways involving Gq,Gi or G12/13.1 Dysfunctions of CaSR can lead to hypercalcaemic and hypocalcaemic disorders.3,4

关键词： insights activation asymmetric calcium-sensing complex into receptor-gq structural

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Structural and functional connectivity of the whole brain and subnetworks in individuals with mild traumatic brain injury:predictors of patient prognosis

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Neural Regeneration research 2024年第7期19卷 1553-1558页

作者： Sihong Huang Jungong Han Hairong Zheng Mengjun Li Chuxin Huang Xiaoyan Kui Jun Liu Department of Radiology The Second Xiangya HospitalCentral South UniversityChangshaHunan ProvinceChina Department of Computer Science Aberystwyth UniversityAberystwythCeredigionUK Shenzhen Institutes of Advanced Technology Chinese Academy of SciencesShenzhenGuangdong ProvinceChina School of Computer Science and Engineering Central South UniversityChangshaHunan ProvinceChina Department of Radiology Quality Control Center of Hunan ProvinceChangshaHunan ProvinceChina Clinical Research Center for Medical Imaging of Hunan Province ChangshaHunan ProvinceChina

Patients with mild traumatic brain injury have a diverse clinical presentation,and the underlying pathophysiology remains poorly *** resonance imaging is a non-invasive technique that has been widely utilized to investigate neuro biological markers after mild traumatic brain *** approach has emerged as a promising tool for investigating the pathogenesis of mild traumatic brain injury.G raph theory is a quantitative method of analyzing complex networks that has been widely used to study changes in brain structure and ***,most previous mild traumatic brain injury studies using graph theory have focused on specific populations,with limited exploration of simultaneous abnormalities in structural and functional *** that mild traumatic brain injury is the most common type of traumatic brain injury encounte red in clinical practice,further investigation of the patient characteristics and evolution of structural and functional connectivity is *** the present study,we explored whether abnormal structural and functional connectivity in the acute phase could serve as indicators of longitudinal changes in imaging data and cognitive function in patients with mild traumatic brain *** this longitudinal study,we enrolled 46 patients with mild traumatic brain injury who were assessed within 2 wee ks of injury,as well as 36 healthy ***-state functional magnetic resonance imaging and diffusion-weighted imaging data were acquired for graph theoretical network *** the acute phase,patients with mild traumatic brain injury demonstrated reduced structural connectivity in the dorsal attention *** than 3 months of followup data revealed signs of recovery in structural and functional connectivity,as well as cognitive function,in 22 out of the 46 ***,better cognitive function was associated with more efficient ***,our data indicated that small-worldness in the acute sta

关键词： cognitive function cross-section follow-up functional connectivity graph theory longitudinal study mild traumatic brain injury prediction small-worldness structural connectivity subnetworks whole brain network

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