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Author Correction: Why rankings of biomedical image analysis competitions should be interpreted with care

Nature communications 2019年第1期10卷 588页

作者： Lena Maier-Hein Matthias Eisenmann Annika Reinke Sinan Onogur Marko Stankovic Patrick Scholz Tal Arbel Hrvoje Bogunovic Andrew P Bradley Aaron Carass Carolin Feldmann Alejandro F Frangi Peter M Full Bram van Ginneken Allan Hanbury Katrin Honauer Michal Kozubek Bennett A Landman Keno März Oskar Maier Klaus Maier-Hein Bjoern H Menze Henning Müller Peter F Neher Wiro Niessen Nasir Rajpoot Gregory C Sharp Korsuk Sirinukunwattana Stefanie Speidel Christian Stock Danail Stoyanov Abdel Aziz Taha Fons van der Sommen Ching-Wei Wang Marc-André Weber Guoyan Zheng Pierre Jannin Annette Kopp-Schneider Division of Computer Assisted Medical Interventions (CAMI) German Cancer Research Center (DKFZ) 69120 Heidelberg Germany. l.maier-hein@dkfz.de. Division of Computer Assisted Medical Interventions (CAMI) German Cancer Research Center (DKFZ) 69120 Heidelberg Germany. Centre for Intelligent Machines McGill University Montreal QC H3A0G4 Canada. Christian Doppler Laboratory for Ophthalmic Image Analysis Department of Ophthalmology Medical University Vienna 1090 Vienna Austria. Science and Engineering Faculty Queensland University of Technology Brisbane QLD 4001 Australia. Department of Electrical and Computer Engineering Department of Computer Science Johns Hopkins University Baltimore MD 21218 USA. CISTIB - Center for Computational Imaging & Simulation Technologies in Biomedicine The University of Leeds Leeds Yorkshire LS2 9JT UK. Department of Radiology and Nuclear Medicine Medical Image Analysis Radboud University Center 6525 GA Nijmegen The Netherlands. Institute of Information Systems Engineering TU Wien 1040 Vienna Austria. Complexity Science Hub Vienna 1080 Vienna Austria. Heidelberg Collaboratory for Image Processing (HCI Heidelberg University 69120 Heidelberg Germany. Centre for Biomedical Image Analysis Masaryk University 60200 Brno Czech Republic. Electrical Engineering Vanderbilt University Nashville TN 37235-1679 USA. Institute of Medical Informatics Universität zu Lübeck 23562 Lübeck Germany. Division of Medical Image Computing (MIC) German Cancer Research Center (DKFZ) 69120 Heidelberg Germany. Institute for Advanced Studies Department of Informatics Technical University of Munich 80333 Munich Germany. Information System Institute HES-SO Sierre 3960 Switzerland. Departments of Radiology Nuclear Medicine and Medical Informatics Erasmus MC 3015 GD Rotterdam The Netherlands. Department of Computer Science University of Warwick Coventry CV4 7AL UK. Department of Radiation Oncology Massachusetts General Hospital Boston MA

In the original version of this Article the values in the rightmost column of Table 1 were inadvertently shifted relative to the other columns. This has now been corrected in the PDF and HTML versions of the Article.

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Ambiguity function for distributed MIMO radar systems

Ambiguity function for distributed MIMO radar systems

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IEEE National Conference on Radar

作者： Christos V Ilioudis Carmine Clemente Ian Proudler John Soraghan Center for Excellence in Signal and Image Processing University of Strathclyde Glasgow UK School of Electronic Electrical and Systems Engineering Loughborough University Leicestershire UK

ISBN: (纸本)9781509008643

In this paper a multi-static ambiguity function (AF) based on the Kullback directed divergence (KDD) and a distributed multiple-input and multiple-output radar system (DMRS) framework is introduced. Additionally a mathematical analysis is used to derive the AF in terms of signal-to-noise ratios (SNRs) and matched filter outputs. This method manages to extract an upper bound and properly define an AF bounded from 0 to 1. Moreover, this method leads in avoidance of large matrices inversions allowing less complex and more accurate computations. Finally the performance of the proposed method in localisation problems is assessed by comparing the proposed AF with the squared summation of the matched filter outputs at each receiver at different SNR scenarios.

关键词： Receivers Transmitters signal to noise ratio MIMO radar Impedance matching Radar antennas

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A primal-dual method for optimal control and trajectory generation in high-dimensional systems

arXiv

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arXiv 2017年

作者： Kirchner, Matthew R. Hewer, Gary Darbon, Jérôme Osher, Stanley Image and Signal Processing Branch Research Directorate Code 4F0000D Naval Air Warfare Center Weapons Division China LakeCA93555 United States Electrical and Computer Engineering Department University of California Santa BarbaraCA93106 United States Division of Applied Mathematics Brown University ProvidenceRI02912 United States Department of Mathematics University of California Los AngelesCA90095 United States

Presented is a method for efficient computation of the Hamilton-Jacobi (HJ) equation for time-optimal control problems using the generalized Hopf formula. Typically, numerical methods to solve the HJ equation rely on a discrete grid of the solution space and exhibit exponential scaling with dimension. The generalized Hopf formula avoids the use of grids and numerical gradients by formulating an unconstrained convex optimization problem. The solution at each point is completely independent, and allows a massively parallel implementation if solutions at multiple points are desired. This work presents a primal-dual method for efficient numeric solution and presents how the resulting optimal trajectory can be generated directly from the solution of the Hopf formula, without further optimization. Examples presented have execution times on the order of milliseconds and experiments show computation scales approximately polynomial in dimension with very small high-order coefficients. Copyright © 2017, The Authors. All rights reserved.

关键词： Numerical methods

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ReSIFT: RELIABILITY-WEIGHTED SIFT-BASED image QUALITY ASSESSMENT

ReSIFT: RELIABILITY-WEIGHTED SIFT-BASED IMAGE QUALITY ASSESS...

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IEEE International Conference on image processing

作者： Dogancan Temel Ghassan AlRegib Center for Signal and Information Processing (CSIP) School of Electrical and Computer Engineering Georgia Institute of Technology Atlanta GA 30332-0250 USA

ISBN: (纸本)9781467399623

This paper presents a full-reference image quality estimator based on SIFT descriptor matching over reliability-weighted feature maps. Reliability assignment includes a smoothing operation, a transformation to perceptual color domain, a local normalization stage, and a spectral residual computation with global normalization. The proposed method ReSIFT is tested on the LIVE and the LIVE Multiply Distorted databases and compared with 11 state-of-the-art full-reference quality estimators. In terms of the Pearson and the Spearman correlation, ReSIFT is the best performing quality estimator in the overall databases. Moreover, ReSIFT is the best performing quality estimator in at least one distortion group in compression, noise, and blur category.

关键词： Reliability Databases Correlation Standards image quality image color analysis Distortion

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Convex cone volume analysis for finding endmembers in hyperspectral imagery

Convex cone volume analysis for finding endmembers in hypers...

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作者： Chang, Chein-I Xiong, Wei Chen, Shih-Yu Information and Technology College Dalian Maritime University Dalian China School of Physics and Optoelectronic Engineering Xidian University Xian China Remote Sensing Signal and Image Processing Laboratory Department of Computer Science and Electrical Engineering University of Maryland Baltimore County BaltimoreMD21250 United States Department of Computer Science and Information Management Providence University Taichung Taiwan Department of Computer Science and Information Engineering National Yunlin University of Science and Technology Yunlin Taiwan

This paper presents a new approach, called convex cone volume analysis (CCVA), which can be considered as a partially constrained-abundance (abundance non-negativity constraint) technique to find endmembers. It can be shown that finding the maximal volume of a convex cone in the original data space is equivalent to finding the maximal volume of a simplex in a hyperplane. As a result, the CCVA can take advantage of many recently developed fast computational algorithms developed for N-FINDR to derive their counterparts for CCVA. © Copyright 2016 Inderscience Enterprises Ltd.

关键词： Spectroscopy

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Identifying the best machine learning algorithms for brain tumor segmentation, progression assessment, and overall survival prediction in the BRATS challenge

arXiv

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arXiv 2018年

作者： Bakas, Spyridon Reyes, Mauricio Jakab, Andras Bauer, Stefan Rempfler, Markus Crimi, Alessandro Shinohara, Russell Takeshi Berger, Christoph Ha, Sung Min Rozycki, Martin Prastawa, Marcel Alberts, Esther Lipkova, Jana Freymann, John Kirby, Justin Bilello, Michel Fathallah-Shaykh, Hassan M. Wiest, Roland Kirschke, Jan Wiestler, Benedikt Colen, Rivka Kotrotsou, Aikaterini Lamontagne, Pamela Marcus, Daniel Milchenko, Mikhail Nazeri, Arash Weber, Marc-Andr Mahajan, Abhishek Baid, Ujjwal Gerstner, Elizabeth Kwon, Dongjin Acharya, Gagan Agarwal, Manu Alam, Mahbubul Albiol, Alberto Albiol, Antonio Albiol, Francisco J. Alex, Varghese Allinson, Nigel Amorim, Pedro H.A. Amrutkar, Abhijit Anand, Ganesh Andermatt, Simon Arbel, Tal Arbelaez, Pablo Avery, Aaron Azmat, Muneeza Pranjal, B. Bai, Wenjia Banerjee, Subhashis Barth, Bill Batchelder, Thomas Batmanghelich, Kayhan Battistella, Enzo Beers, Andrew Belyaev, Mikhail Bendszus, Martin Benson, Eze Bernal, Jose Bharath, Halandur Nagaraja Biros, George Bisdas, Sotirios Brown, James Cabezas, Mariano Cao, Shilei Cardoso, Jorge M. Carver, Eric N. Casamitjana, Adri Castillo, Laura Silvana Cat, Marcel Cattin, Philippe Cérigues, Albert Chagas, Vinicius S. Chandra, Siddhartha Chang, Yi-Ju Chang, Shiyu Chang, Ken Chazalon, Joseph Chen, Shengcong Chen, Wei Chen, Jefferson W. Chen, Zhaolin Cheng, Kun Choudhury, Ahana Roy Chylla, Roger Clrigues, Albert Colleman, Steven Colmeiro, Ramiro German Rodriguez Combalia, Marc Costa, Anthony Cui, Xiaomeng Dai, Zhenzhen Dai, Lutao Daza, Laura Alexandra Deutsch, Eric Ding, Changxing Dong, Chao Dong, Shidu Dudzik, Wojciech Eaton-Rosen, Zach Egan, Gary Escudero, Guilherme Estienne, Tho Everson, Richard Fabrizio, Jonathan Fan, Yong Fang, Longwei Feng, Xue Ferrante, Enzo Fidon, Lucas Fischer, Martin French, Andrew P. Fridman, Naomi Fu, Huan Fuentes, David Gao, Yaozong Gates, Evan Gering, David Gholami, Amir Gierke, Willi Glocker, Ben Gong, Mingming Gonzlez-Vill, Sandra Grosges, T. Guan, Yuanfang Guo, Sheng Gupta, Sudeep Han, Woo-Sup Han, Il Song Harmuth, Ko Center for Biomedical Image Computing and Analytics University of Pennsylvania PhiladelphiaPA United States Department of Radiology Perelman School of Medicine University of Pennsylvania PhiladelphiaPA United States Department of Pathology and Laboratory Medicine Perelman School of Medicine University of Pennsylvania PhiladelphiaPA United States Institute for Surgical Technology and Biomechanics University of Bern Bern Switzerland Center for MR-Research University Children's Hospital Zurich Zurich Switzerland Support Centre for Advanced Neuroimaging Inselspital Institute for Diagnostic and Interventional Neuroradiology Bern University Hospital Bern Switzerland University Hospital of Zurich Zurich Switzerland Center for Clinical Epidemiology and Biostatistics University of Pennsylvania Philadelphia United States Image-Based Biomedical Modeling Group Technical University of Munich Munich Germany Icahn School of Medicine Mount Sinai Health System New YorkNY United States Leidos Biomedical Research Inc. Frederick National Laboratory for Cancer Research FrederickMD21701 United States Cancer Imaging Program National Cancer Institute National Institutes of Health BethesdaMD20814 United States Department of Neurology University of Alabama at Birmingham BirminghamAL United States Department of Diagnostic Radiology University of Texas MD Anderson Cancer Center HoustonTX United States Department of Psychology Washington University St. LouisMO United States Neuroimaging Informatics and Analysis Center Washington University St. LouisMO United States Department of Radiology Washington University St. LouisMO United States Institute of Diagnostic and Interventional Radiology Pediatric Radiology and Neuroradiology University Medical Center Rostock Ernst-Heydemann-Str. 6 Rostock18057 Germany Tata Memorial Centre Homi Bhabha National Institute Mumbai India Shri Guru Gobind Singhji Institute of Engineering and Technology Nanded India NVIDIA Santa Clara

Gliomas are the most common primary brain malignancies, with different degrees of aggressiveness, variable prognosis and various heterogeneous histologic sub-regions, i.e., peritumoral edematous/invaded tissue, necrotic core, active and non-enhancing core. This intrinsic heterogeneity is also portrayed in their radio-phenotype, as their sub-regions are depicted by varying intensity profiles disseminated across multi-parametric magnetic resonance imaging (mpMRI) scans, reflecting varying biological properties. Their heterogeneous shape, extent, and location are some of the factors that make these tumors difficult to resect, and in some cases inoperable. The amount of resected tumor is a factor also considered in longitudinal scans, when evaluating the apparent tumor for potential diagnosis of progression. Furthermore, there is mounting evidence that accurate segmentation of the various tumor sub-regions can offer the basis for quantitative image analysis towards prediction of patient overall survival. This study assesses the state-of-the-art machine learning (ML) methods used for brain tumor image analysis in mpMRI scans, during the last seven instances of the International Brain Tumor Segmentation (BraTS) challenge, i.e., 2012-2018. Specifically, we focus on i) evaluating segmentations of the various glioma sub-regions in pre-operative mpMRI scans, ii) assessing potential tumor progression by virtue of longitudinal growth of tumor sub-regions, beyond use of the RECIST/RANO criteria, and iii) predicting the overall survival from pre-operative mpMRI scans of patients that underwent gross total resection. Finally, we investigate the challenge of identifying the best ML algorithms for each of these tasks, considering that apart from being diverse on each instance of the challenge, the multi-institutional mpMRI BraTS dataset has also been a continuously evolving/growing dataset. Copyright © 2018, The Authors. All rights reserved.

关键词： Tumors

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COMPLETED LOCAL DERIVATIVE PATTERN FOR ROTATION INVARIANT TEXTURE CLASSIFICATION

COMPLETED LOCAL DERIVATIVE PATTERN FOR ROTATION INVARIANT TE...

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IEEE International Conference on image processing

作者： Yuting Hu Zhiling Long Ghassan AlRegib Multimedia & Sensors Lab (MSL) Center for Signal and Information Processing (CSIP) School of Electrical and Computer Engineering Georgia Institute of Technology Atlanta GA 30332-0250 USA

ISBN: (纸本)9781467399623

In this paper, we propose a new texture descriptor, completed local derivative pattern (CLDP). In contrast to completed local binary pattern (CLBP), which involves only local differences at each scale, CLDP encodes the directional variation of the local differences of two scales as a complementary component to local patterns in CLBP. The new component in CLDP, with regarded as the directional derivative pattern, reflects the directional smoothness of local textures without increasing computation complexity. Experimental results on the Outex database show that CLDP, as a uni-scale pattern, outperforms uni-scale state-of-the-art texture descriptors on texture classification and has comparable performance with multi-scale texture descriptors.

关键词： Histograms Databases Lighting Testing Encoding Training Robustness

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Extinction profiles: A novel approach for the analysis of remote sensing data

Extinction profiles: A novel approach for the analysis of re...

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IEEE International Symposium on Geoscience and Remote Sensing (IGARSS)

作者： Pedram Ghamisi Roberto Souza Letícia Rittner Jon A. Benediktsson Roberto Lotufo Xiao X. Zhu German Aerospace Center (DLR) Remote Sensing Technology Institute (IMF) Signal Processing in Earth Observation Technische Universität München (TUM) School of Electrical and Computer Engineering UNICAMP Faculty of Electrical and Computer Engineering Ubiversity of Iceland

This paper presents a novel approach named extinction profiles to model the spatial information of remote sensing images. Then, the output of the extinction profile is fed to a grid-search random forest classification method. Results indicate that the proposed approach can effectively extract spatial information from remote sensing gray scale images and provide high classification accuracies in an automatic way.

关键词： Remote sensing Satellites image resolution Training computers Radio frequency Measurement

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Optimal experiment design for magnetic resonance fingerprinting: Cram'er-rao bound meets spin dynamics

arXiv

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arXiv 2017年

作者： Zhao, Bo Haldar, Justin P. Liao, Congyu Ma, Dan Jiang, Yun Griswold, Mark A. Setsompop, Kawin Wald, Lawrence L. Athinoula A. Martinos Center for Biomedical Imaging Massachusetts General Hospital CharlestownMA02129 United States Department of Radiology Harvard Medical School BostonMA02115 United States Signal and Image Processing Institute Department of Electrical Engineering University of Southern California Los AngelesCA90089 United States Athinoula A. Martinos Center for Biomedical Imaging Massachusetts General Hospital CharlestownMA02129 United States Department of Biomedical Engineering Zhejiang University Hangzhou Zhejiang Province310027 China Department of Radiology Case Western Reserve University ClevelandOH44106 United States Harvard-MIT Division of Health Sciences and Technology Massachusetts Institute of Technology CambridgeMA02139 United States

Magnetic resonance (MR) fingerprinting is a new quantitative imaging paradigm, which simultaneously acquires multiple MR tissue parameter maps in a single experiment. In this paper, we present an estimation-theoretic framework to perform experiment design for MR fingerprinting. Specifically, we describe a discrete-time dynamic system to model spin dynamics, and derive an estimation-theoretic bound, i.e., the Cram'er-Rao bound (CRB), to characterize the signal-to-noise ratio (SNR) efficiency of an MR fingerprinting experiment. We then formulate an optimal experiment design problem, which determines a sequence of acquisition parameters to encode MR tissue parameters with the maximal SNR efficiency, while respecting the physical constraints and other constraints from the image decoding/reconstruction process. We evaluate the performance of the proposed approach with numerical simulations, phantom experiments, and in vivo experiments. We demonstrate that the optimized experiments substantially reduce data acquisition time and/or improve parameter estimation. For example, the optimized experiments achieve about a factor of two improvement in the accuracy of T2maps, while keeping similar or slightly better accuracy of T1 maps. Finally, as a remarkable observation, we find that the sequence of optimized acquisition parameters appears to be highly structured rather than randomly/pseudorandomly varying as is prescribed in the conventional MR fingerprinting experiments. Copyright © 2017, The Authors. All rights reserved.

关键词： Spin dynamics

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Improving the detection of mtbi via complexity analysis in resting - state magnetoencephalography

Improving the detection of mtbi via complexity analysis in r...

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IEEE International Workshop on Imaging Systems and Techniques (IST)

作者： Marios Antonakakis Stavros I. Dimitriadis Andrew C. Papanicolaou George Zouridakis Michalis Zervakis Digital Image and Signal Processing Laboratory School of Electronic and Computer Engineering Technical University of Crete Chania Greece Neuroinformatics Group Aristotle University Thessaloniki Greece Cardiff University Brain Research Imaging Centre (CUBRIC) School of Psychology Cardiff University Cardiff United Kingdom Departments of Pediatrics and Anatomy and Neurobiology University of Tennessee Health Science Center Memphis TN USA Neuroscience Institute Le Bonheur Children's Hospital Memphis TN USA Departments of Engineering Technology Computer Science Biomedical Engineering and Electrical and Computer Engineering University of Houston Houston TX USA

ISBN: (纸本)9781509018185

Diagnosis of mild Traumatic Brain Injury (mTBI) is difficult due to the variability of obvious brain lesions using imaging scans. A promising tool for exploring potential biomarkers for mTBI is magnetoencephalography which has the advantage of high spatial and temporal resolution. By adopting proper analytic tools from the field of symbolic dynamics like Lempel-Ziv complexity, we can objectively characterize neural network alterations compared to healthy control by enumerating the different patterns of a symbolic sequence. This procedure oversimplifies the rich information of brain activity captured via MEG. For that reason, we adopted neural-gas algorithm which can transform a time series into more than two symbols by learning brain dynamics with a small reconstructed error. The proposed analysis was applied to recordings of 30 mTBI patients and 50 normal controls in δ frequency band. Our results demonstrated that mTBI patients could be separated from normal controls with more than 97% classification accuracy based on high complexity regions corresponding to right frontal areas. In addition, a reverse relation between complexity and transition rate was demonstrated for both groups. These findings indicate that symbolic complexity could have a significant predictive value in the development of reliable biomarkers to help with the early detection of mTBI.

关键词： Complexity theory Time series analysis Sensitivity Integrated circuits Indexes Brain Laplace equations

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