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IEEE Annual Joint Conference: INFOCOM, IEEE computer and Communications Societies

作者： Deze Zeng Hongmin Geng Lin Gu Zhexiong Li School of Computer Science China University of Geosciences Wuhan China National Engineering Research Center for Big Data Technology and System Services Computing Technology and System Lab Cluster and Grid Computing Lab School of Computer Science and Technology Huazhong University of Science and Technology Wuhan China

Although the containers are featured by light-weightness, it is still resource-consuming to pull and startup a large container image, especially in relatively resource-constrained edge cloud. Fortunately, Docker, as the most widely used container, provides a unique layered architecture that allows the same layer to be shared between microservices so as to lower the deployment cost. Meanwhile, it is highly desirable to deploy dependent microservices of an application together to lower the operation cost. Therefore, the balancing of microservice deployment cost and the operation cost should be considered comprehensively to achieve minimal overall cost of an on-demand application. In this paper, we first formulate this problem into a Quadratic Integer Programming form (QIP) and prove it as a NP-hard problem. We further propose a Randomized Rounding-based Microservice Deployment and Layer Pulling (RR-MDLP) algorithm with low computation complexity and guaranteed approximation ratio. Through extensive experiments, we verify the high efficiency of our algorithm by the fact that it significantly outperforms existing state-of-the-art microservice deployment strategies.

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Fast Parallel Recovery for Transactional Stream Processing on Multicores

Fast Parallel Recovery for Transactional Stream Processing o...

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International Conference on Data Engineering

作者： Jianjun Zhao Haikun Liu Shuhao Zhang Zhuohui Duan Xiaofei Liao Hai Jin Yu Zhang National Engineering Research Center for Big Data Technology and System Services Computing Technology and System Lab Cluster and Grid Computing Lab School of Computer Science and Technology Huazhong University of Science and Technology Wuhan China School of Computer Science and Engineering Nanyang Technological University Singapore

ISBN: (数字)9798350317152

ISBN: (纸本)9798350317169

Transactional stream processing engines (TSPEs) have gained increasing attention due to their capability of processing real-time stream applications with transactional semantics. However, TSPEs remain susceptible to system failures and power outages. Existing TSPEs mainly focus on performance improvement, but still face a significant challenge to guarantee fault tolerance while offering high-performance services. We revisit commonly-used fault tolerance approaches in stream processing and database systems, and find that these approaches do not work well on TSPEs due to complex data dependencies. In this paper, we propose a novel TSPE called MorphStreamR to achieve fast failure recovery while guaranteeing low performance overhead at runtime. The key idea of MorphStreamR is to record intermediate results of resolved dependencies at runtime, and thus eliminate data dependencies to improve task parallelism during failure recovery. MorphStreamR further mitigates the runtime overhead by selectively tracking data dependencies and incorporating workload-aware log commitment. Experimental results show that MorphStreamR can significantly reduce the recovery time by up to 3.1 x while experiencing much less performance slowdown at runtime, compared with other applicable fault tolerance approaches.

关键词： Fault tolerance Runtime Fault tolerant systems Semantics Parallel processing Real-time systems Power system reliability

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Performance Modeling of Resource Failures in grid Environments

Performance Modeling of Resource Failures in Grid Environmen...

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Japan-China Joint Workshop on Frontier of computer science and technology (FCST)

作者： Yongcai Tao Song Wu Lei Shi School of Information Engineering University of Zhengzhou Zhengzhou Henan China Services Computing Technology and System Laboratory Cluster and Grid Computing Lab Huazhong University of Science and Technology Wuhan China

grid is susceptible to a number of software and hardware failures, so a deep understanding of and modeling the grid resource failures are a challenge and have significant influence on grid researching. However, due to various reasons such as commercial secret and security, it is difficult to obtain real historical logs of grids. Therefore, an accurate model of resource failures is critically useful. In the paper, through analyzing the grid log data, we detail the suitability of three potential statistical distributions for each data set: Weibull, Zipf's law and Pareto. Then, this paper develops a grid resource failure simulator. Finally, with the different failure patterns generated by the failure simulator, the paper evaluates several common scheduling algorithms used in grid systems.

关键词： Scheduling algorithm Weibull distribution Transient analysis Computational modeling User interfaces Distribution functions

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A Data-Centric Accelerator for High-Performance Hypergraph Processing 22

A Data-Centric Accelerator for High-Performance Hypergraph P...

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Proceedings of the 55th Annual IEEE/ACM International Symposium on Microarchitecture

作者： Qinggang Wang Long Zheng Ao Hu Yu Huang Pengcheng Yao Chuangyi Gui Xiaofei Liao Hai Jin Jingling Xue National Engineering Research Center for Big Data Technology and System/Services Computing Technology and System Lab/Cluster and Grid Computing Lab School of Computer Science and Technology Huazhong University of Science and Technology Wuhan China and Zhejiang Lab Hangzhou China National Engineering Research Center for Big Data Technology and System/Services Computing Technology and System Lab/Cluster and Grid Computing Lab School of Computer Science and Technology Huazhong University of Science and Technology Wuhan China School of Computer Science and Engineering University of New South Wales Sydney NSW Australia

ISBN: (纸本)9781665462723

Hypergraph processing has emerged as a powerful approach for analyzing complex multilateral relationships among multiple entities. Past research on building hypergraph systems suggests that changing the scheduling order of bipartite edge tasks can improve the overlap-induced data locality in hypergraph processing. However, due to the complex intertwined connections between vertices and hyperedges, it is almost impossible to find a locality-optimal scheduling order. Thus, these task-centric hypergraph systems often suffer from substantial off-chip *** this paper, we first propose a novel data-centric Load-Trigger-Reduce (LTR) execution model to exploit fully the locality in hypergraph processing. Unlike a task-centric model that loads the required data along with a task, our LTR model invokes tasks as per the data used. Specifically, once the hypergraph data is loaded into the on-chip memory, all of its relevant computation tasks will be triggered simultaneously to output intermediate results, which are finally reduced to update the final results. Our LTR model enables all hypergraph data to be accessed once in each iteration. To fully exploit the LTR performance potential, we further architect an LTR-driven hypergraph accelerator, XuLin, which features with an adaptive data loading mechanism to minimize the loading cost via chunk merging at runtime. XuLin is also equipped with a priority-based differential data reduction scheme to reduce the impact of conflicting updates on performance. We have implemented XuLin both on a Xilinx Alveo U250 FPGA card and using a cycle-accurate simulator. The results show that XuLin outperforms the state-of-the-art hypergraph processing solutions Hygra and ChGraph by 20.47× and 8.77× on average, respectively.

关键词： hypergraph data-centric accelerator

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HYPERBOLIC HYPERGRAPH NEURAL NETWORKS FOR MULTI-RELATIONAL KNOWLEDGE HYPERGRAPH REPRESENTATION

arXiv

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arXiv 2024年

作者： Li, Mengfan Shi, Xuanhua Qiao, Chenqi Zhang, Teng Jin, Hai National Engineering Research Center for Big Data Technology and System Services Computing Technology and System Lab Cluster and Grid Computing Lab School of Computer Science and Technology Huazhong University of Science and Technology Wuhan430074 China

Knowledge hypergraphs generalize knowledge graphs using hyperedges to connect multiple entities and depict complicated relations. Existing methods either transform hyperedges into an easier-to-handle set of binary relations or view hyperedges as isolated and ignore their adjacencies. Both approaches have information loss and may potentially lead to the creation of sub-optimal models. To fix these issues, we propose the Hyperbolic Hypergraph Neural Network (H2GNN), whose essential component is the hyper-star message passing, a novel scheme motivated by a lossless expansion of hyperedges into hierarchies. It implements a direct embedding that consciously incorporates adjacent entities, hyper-relations, and entity position-aware information. As the name suggests, H2GNN operates in the hyperbolic space, which is more adept at capturing the tree-like hierarchy. We compare H2GNN with 15 baselines on knowledge hypergraphs, and it outperforms state-of-the-art approaches in both node classification and link prediction tasks. Copyright © 2024, The Authors. All rights reserved.

关键词： Knowledge graph

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Hyperbit: A Financial Temporal Knowledge Graph Data Storage System

SSRN

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SSRN 2022年

作者： Yuan, Pingpeng Han, Sheng Zang, Shaoqi Shi, Xuanhua Jin, Hai National Engineering Research Center for Big Data Technology and System Services Computing Technology and System Lab Cluster and Grid Computing Lab School of Computer Science and Technology Huazhong University of Science and Technology Wuhan430074 China

In the field of finance, data has the characteristics of temporal multi-frequency and heterogeneous high dimension, and the traditional knowledge graph is not suitable to express the temporal relation of financial data, so the financial temporal knowledge graph has become a research hotspot recently. There are a large number of temporal edges in the financial temporal knowledge graph. The use of general graph database management system to store financial knowledge graph data has problems such as large storage scale and slow update speed, and it cannot realize the traceability of financial data, so it cannot meet the needs of the financial field. In order to solve these problems, HyperBit, a storage system for efficient storage and management of financial data, is designed and implemented. Firstly, a temporal quad storage structure is proposed. Secondly, the Log Structured Cumulative Update (LSCU) is proposed to update financial temporal data efficiently. The update log module is designed in the system. When there is data to update, it is not directly updated in the data storage of the system, but recorded in the update log, and the system updates the content of the update log cumulatively. The system manages update logs by partition and chunk, which makes the log storage compact and independent. Besides, it is convenient for parallel processing and it improves the data update speed. Thirdly, a Bidirectional Backtracking by Final and Optimal Root (BBFOR) method is proposed to meet the requirements of efficient traceability of financial data. Unlike traditional version tracing method, BBFOR adopt both the snapshot and incremental methods which balance the space and time cost of version switching, and BBROF consider the version of the access frequency characteristic and set up the final root and the optimal root. Besides, BBROF adopt bidirectional backtracking technology to improve the efficiency of the version switching. Experimental results show that the storage cost

关键词： Switching

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Genome-wide identification and analysis of MAPK and MAPKK gene families in Brachypodium distachyon

Genome-wide identification and analysis of MAPK and MAPKK ge...

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第十四届全国植物基因组学大会

作者： Lihong Chen Yang Zhang Yuan He Wei Hu Shenglong Tan Min Wang Shiyi Zhou Xiaomin Deng Chao Huang Kexiu Li Junli Chang Mingjie Chen Yuesheng Wang Guangxiao Yang Guangyuan He The Genetic Engineering International Cooperation Base of Chinese Ministry of Science and Technology Key Laboratory of Molecular Biophysics of Chinese Ministry of EducationCollege of Life Science and TechnologyCollege of Life Science and TechnologyHuazhong University of Science & Technology(HUST) Services Computing Technology and System Laboratory Cluster and Grid Computing LaboratorySchool of Computer Science and TechnologyHuazhong University of Science & Technology(HUST)

Mitogen-activated protein kinase(MAPK) cascade,consisting of three Ser/Thr protein kinases,namely,MAPKKK,MAPKK and MAPK,is a universal module in signal transduction pathways in *** proteins have been implicated in diverse cellular processes including cell growth,proliferation,differentiation,survival, development and in responses to a diversity of environmental stimuli including cold, heat,reactive oxygen species,UV,drought and pathogen attack.

关键词： Brachypodium distachyon MAPK MAPKK phylogenetic analysis yeast two hybrid expression profile

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A Distributed Workflow Management Approach in CGSP

A Distributed Workflow Management Approach in CGSP

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International Conference on grid and Cooperative computing (GCC)

作者： Haifeng Ou Xiaowu Chen Bin Cai Haijun Cao The Key Laboratory of Virtual Reality Technology Ministry of Education School of Computer Science and Engineering Beihang University Beijing China South China University of Technology Guangzhou China Cluster and Grid Computing Laboratory Huazhong University of Science and Technology Wuhan China

Workflow management technologies play a very important role in constructing grid application environment by automating service composition and execution. With the fast spread of grid technology, workflow management system should be flexible to meet increasing requirements of service composition. This paper introduces a distributed workflow management approach DWM4CGSP named distributed workflow management for CGSP, which can improve capability of workflow execution by dynamically assimilating new workflow engines and balancing workload among these engines. Moreover dynamic load balancing is applied in DWM4CGSP in order to make workload on each engine at reasonable level. Finally an implementation demonstrates that DWM4CGSP works well in CGSP and can be further extended to other similar grids

关键词： Load management grid computing Energy management Search engines Web services technology management Laboratories Monitoring Engineering management Virtual reality

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Graph for science: From API based Programming to Graph Engine based Programming for HPC

arXiv

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arXiv 2023年

作者： Zhang, Yu Wang, Zixiao Zhao, Jin Guo, Yuluo Yu, Hui Huang, Zhiying Shi, Xuanhua Liao, Xiaofei National Engineering Research Center for Big Data Technology and System Services Computing Technology and System Lab. Cluster and Grid Computing Lab. School of Computer Science and Technology Huazhong University of Science and Technology Wuhan China

Modern scientific applications predominantly run on large-scale computing platforms, necessitating collaboration between scientific domain experts and high-performance computing (HPC) experts. While domain experts are often skilled in customizing domain-specific scientific computing routines, which often involves various matrix computations, HPC experts are essential for achieving efficient execution of these computations on large-scale platforms. This process often involves utilizing complex parallel computing libraries tailored to specific matrix computation scenarios. However, the intricate programming procedure and the need for deep understanding in both application domains and HPC poses significant challenges to the widespread adoption of scientific computing. In this research, we observe that matrix computations can be transformed into equivalent graph representations, and that by utilizing graph processing engines, HPC experts can be freed from the burden of implementing efficient scientific computations. Based on this observation, we introduce a graph engine-based scientific computing (Graph for science) paradigm, which provides a unified graph programming interface, enabling domain experts to promptly implement various types of matrix computations. The proposed paradigm leverages the underlying graph processing engine to achieve efficient execution, eliminating the needs for HPC expertise in programming large-scale scientific applications. We evaluate the performance of the developed graph compute engine for three typical scientific computing routines. Our results demonstrate that the graph engine-based scientific computing paradigm achieves performance comparable to the best-performing implementations based on existing parallel computing libraries and bespoke implementations. Importantly, the paradigm greatly simplifies the development of scientific computations on large-scale platforms, reducing the programming difficulty for scientists and facilitating b

关键词： Application programming interfaces (API)

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computing and Informatics: Foreword

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computing and Informatics 2008年第5期27卷 701-706页

作者： Jin, Hai You, Ilsun Guo, Minyi Lee, Deok Gyu Cluster and Grid Computing Lab School of Computer Science and Technology Huazhong University of Science and Technology Wuhan 430074 China School of Information Science Korean Bible University Korea Republic of School of Computer Science and Engineering University of Aizu Japan Information Security Technology Division Electronics and Telecommunications Research Institute Korea Republic of

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