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arXiv 2024年

作者： Wang, Bo Tan, Dingwei Kuo, Yen-Ling Sun, Zhaowei Wolfe, Jeremy M. Cham, Tat-Jen Zhang, Mengmi College of Computing and Data Science Nanyang Technological University Singapore Deep NeuroCognition Lab I2R CFAR Agency for Science Technology and Research Singapore Harbin Institute of Technology Harbin China Beijing Institute of Technology Beijing China University of Virginia United States Brigham and Women’s Hospital United States Harvard Medical School United States

Imagine searching a collection of coins for quarters (0.25), dimes (0.10), nickels (0.05), and pennies (0.01)—a hybrid foraging task where observers look for multiple instances of multiple target types. In such tasks, how do target values and their prevalence influence foraging and eye movement behaviors (e.g., should you prioritize rare quarters or common nickels)? To explore this, we conducted human psychophysics experiments, revealing that humans are proficient reward foragers. Their eye fixations are drawn to regions with higher average rewards, fixation durations are longer on more valuable targets, and their cumulative rewards exceed chance, approaching the upper bound of optimal foragers. To probe these decision-making processes of humans, we developed a transformer-based Visual Forager (VF) model trained via reinforcement learning. Our VF model takes a series of targets, their corresponding values, and the search image as inputs, processes the images using foveated vision, and produces a sequence of eye movements along with decisions on whether to collect each fixated item. Our model outperforms all baselines, achieves cumulative rewards comparable to those of humans, and approximates human foraging behavior in eye movements and foraging biases within time-limited environments. Furthermore, stress tests on out-of-distribution tasks with novel targets, unseen values, and varying set sizes demonstrate the VF model’s effective generalization. Our work offers valuable insights into the relationship between eye movements and decision-making, with our model serving as a powerful tool for further exploration of this connection. All data, code, and models are available at https://***/ZhanglabDeepNeuroCoglab/visual-forager. Copyright © 2024, The Authors. All rights reserved.

关键词： Eye movements

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Optimizing Ethanol Production in Escherichia Coli Using a Hybrid of Particle Swarm Optimization and Artificial Bee Colony 6

Optimizing Ethanol Production in Escherichia Coli Using a Hy...

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6th International Conference on Advances in Artificial Intelligence, ICAAI 2022

作者： Dzulkalnine, Mohamad Faiz Mohamad, Mohd Saberi Choon, Yee Wen Remli, Muhammad Akmal Alashwal, Hany Artificial Intelligence and Bioinformatics Research Group Faculty of Computing Universiti Teknologi Malaysia Johor81310 Malaysia Health Data Science Lab Department of Genetics and Genomics College of Medical and Health Sciences United Arab Emirates University P.O. Box 17666 Al Ain Abu Dhabi United Arab Emirates Big Data Analytics Center United Arab Emirates University Al Ain Abu Dhabi United Arab Emirates Institute for Artificial Intelligence and Big Data Universiti Malaysia Kelantan Kelantan Kota Bharu16100 Malaysia Department of Data Science Universiti Malaysia Kelantan Kelantan Kota Bharu16100 Malaysia Department of Computer Science and Software Engineering College of Information Technology United Arab Emirates University Al-Ain United Arab Emirates

ISBN: (纸本)9781450396943

Metabolic engineering for biomass production using microorganisms' cell has received considerable attention in recent years. This is due to the biomass products being extensively used in the field of food additives, supplements, pharmaceuticals, and polymer materials. In this paper, ethanol production in Escherichia coli (E. coli) is the desired product. Sugarcane and corn are often used to produce ethanol. However, one of the problems to produce adequate amounts of ethanol is that large areas are needed to plant sugarcane and corn. Furthermore, the amount of time for the process of dry milling and wet milling is high, which are 40 to 50 hours and 24 to 48 hours, respectively. The wet laboratory is also having limitation on the production of ethanol in microorganisms because the amount of the ethanol produced is not satisfying. Hence, a lot of metabolic engineering techniques is introduced to enhance the production of ethanol in E. coli, such as gene knockout strategy, but the production is yet to meet the demand. Therefore, this paper proposes a hybrid algorithm of Particle Swarm Optimization with the Artificial Bee Colony algorithm (PSOABC) to identify the optimal set of gene knockout strategy to improve the ethanol production in E. coli. A list of genes to knockout, production of the desired product, and growth rate are presented in this paper. PSOABC has shown better performance in terms of production, growth rate and accuracy. © 2022 Association for computing Machinery.

关键词： Ethanol

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Deep learning for brain age estimation: A systematic review

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Information Fusion 2023年 96卷 130-143页

作者： Tanveer, M. Ganaie, M.A. Beheshti, Iman Goel, Tripti Ahmad, Nehal Lai, Kuan-Ting Huang, Kaizhu Zhang, Yu-Dong Del Ser, Javier Lin, Chin-Teng Department of Mathematics Indian Institute of Technology Indore Simrol Indore453552 India Department of Robotics University of Michigan Ann ArborMI48109 United States Department of Human Anatomy and Cell Science Rady Faculty of Health Sciences Max Rady College of Medicine University of Manitoba WinnipegMB Canada Biomedical Imaging Lab National Institute of Technology Silchar Assam 788010 India Department of Electrical Engineering and Computer Science National Taipei University of Technology Taipei Taiwan Department of Electronic Engineering National Taipei University of Technology Taipei Taiwan Data Science Research Center Duke Kunshan University China School of Computing and Mathematical Sciences University of Leicester LeicesterLE1 7RH United Kingdom Derio48160 Spain Bilbao48013 Spain School of Computer Science Faculty of Engineering and Information Technology University of Technology Sydney Sydney Australia

Over the years, Machine Learning models have been successfully employed on neuroimaging data for accurately predicting brain age. Deviations from the healthy brain aging pattern are associated with the accelerated brain aging and brain abnormalities. Hence, efficient and accurate diagnosis techniques are required to elicit accurate brain age estimations. Several contributions have been reported in the past for this purpose, resorting to different data-driven modeling methods. Recently, deep neural networks (also referred to as deep learning) have become prevalent in manifold neuroimaging studies, including brain age estimation. In this review, we offer a comprehensive analysis of the literature related to the adoption of deep learning for brain age estimation with neuroimaging data. We detail and analyze different deep learning architectures used for this application, pausing at research works published to date quantitatively exploring their application. We also examine different brain age estimation frameworks, comparatively exposing their advantages and weaknesses. Finally, the review concludes with an outlook towards future directions that should be followed by prospective studies. The ultimate goal of this paper is to establish a common and informed reference for newcomers and experienced researchers willing to approach brain age estimation by using deep learning models. © 2023 Elsevier B.V.

关键词： Deep neural networks

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Gray Learning from Non-IID data with Out-of-distribution Samples

arXiv

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arXiv 2022年

作者： Zhao, Zhilin Cao, Longbing Wang, Chang-Dong The Data Science Lab School of Computing and DataX Research Centre Macquarie University SydneyNSW2109 Australia The School of Computer Science and Engineering Sun Yat-sen University Guangzhou China Guangdong Province Key Laboratory of Computational Science Guangzhou China Key Laboratory of Machine Intelligence and Advanced Computing Ministry of Education China

The integrity of training data, even when annotated by experts, is far from guaranteed, especially for non-IID datasets comprising both in- and out-of-distribution samples. In an ideal scenario, the majority of samples would be in-distribution, while samples that deviate semantically would be identified as out-of-distribution and excluded during the annotation process. However, experts may erroneously classify these out-of-distribution samples as in-distribution, assigning them labels that are inherently unreliable. This mixture of unreliable labels and varied data types makes the task of learning robust neural networks notably challenging. We observe that both in- and out-of-distribution samples can almost invariably be ruled out from belonging to certain classes, aside from those corresponding to unreliable ground-truth labels. This opens the possibility of utilizing reliable complementary labels that indicate the classes to which a sample does not belong. Guided by this insight, we introduce a novel approach, termed Gray Learning (GL), which leverages both ground-truth and complementary labels. Crucially, GL adaptively adjusts the loss weights for these two label types based on prediction confidence levels. By grounding our approach in statistical learning theory, we derive bounds for the generalization error, demonstrating that GL achieves tight constraints even in non-IID settings. Extensive experimental evaluations reveal that our method significantly outperforms alternative approaches grounded in robust statistics. Copyright © 2022, The Authors. All rights reserved.

关键词： Machine learning

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Semi-supervised video deraining with dynamical rain generator

arXiv

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arXiv 2021年

作者： Yue, Zongsheng Xie, Jianwen Zhao, Qian Meng, Deyu Xi'an Jiaotong University Xi'an China Cognitive Computing Lab Baidu Research Bellevue United States Macau University of Science and Technology China

While deep learning (DL)-based video deraining methods have achieved significant successes in recent years, they still have two major drawbacks. Firstly, most of them are insufficient to model the characteristics of rain layers contained in rainy videos. In fact, the rain layers exhibit strong visual properties (e.g., direction, scale, and thickness) in spatial dimension and causal properties (e.g., velocity and acceleration) in temporal dimension, and thus can be modeled by the spatial-temporal process in statistics. Secondly, current DL-based methods rely heavily on the labeled training data, whose rain layers are synthetic, thus leading to a deviation from real data. Such a gap between synthetic and real data sets results in poor performance when applying them to real scenarios. To address these issues, this paper proposes a new semi-supervised video deraining method, in which a dynamical rain generator is employed to fit the rain layer for the sake of better depicting its intrinsic characteristics. Specifically, the dynamical generator consists of one emission model and one transition model to simultaneously encode the spatial appearance and temporal dynamics of rain streaks, respectively, both of which are parameterized by deep neural networks (DNNs). Furthermore, different prior formats are designed for the labeled synthetic and unlabeled real data so as to fully exploit their underlying common knowledge. Last but not least, we design a Monte Carlo-based EM algorithm to learn the model. Extensive experiments are conducted to verify the superiority of the proposed semi-supervised deraining model. © 2021, CC BY-NC-SA.

关键词： Rain

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Space-Oblivious Compression and Wear Leveling for Non-Volatile Main Memories 36

Space-Oblivious Compression and Wear Leveling for Non-Volati...

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36th International Conference on Massive Storage Systems and Technology, MSST 2020

作者： Liu, Haikun Ye, Yuanyuan Liao, Xiaofei Jin, Hai Zhang, Yu Jiang, Wenbin He, Bingsheng National Engineering Research Center for Big Data Technology and System Services Computing Technology and System Lab Cluster and Grid Computing Lab School of Computer Science and Technology Huazhong University of Science and Technology Wuhan430074 China School of Computing National University of Singapore Singapore

Emerging Non-Volatile Main Memory (NVMM) technologies generally feature high density, low energy consumption and cost per bit compared to DRAM. However, the limited write endurance of NVMM poses a significant challenge of using NVMM as an substitute for DRAM. This paper proposes a space-oblivious compression and wear-leveling based memory architecture to improve the write endurance of NVMM. As memory blocks of many applications usually contain a large amount of zero bytes and frequent values, we propose a nonuniform compression encoding scheme that integrates Zero Deduplication with Frequent Value Compression (called ZD-FVC) to reduce bit-writes on NVMM. Moreover, we leverage the memory space available through compression to achieve an intra-block wear leveling policy. It rotates the writing positions of a compressed data block within the data’s initial memory space, and thus enhances write endurance by balancing the bit-writes per NVMM cell. ZD-FVC can be integrated into the NVMM module and implemented entirely by hardware, without any intervention of Operating Systems. We implement ZD-FVC in Gem5 and NVMain simulators, and evaluate it with several programs from SPEC CPU2006. Experimental results shows that ZD-FVC is much better than several state-of-the-art approaches. Particularly, ZD-FVC can improve data compression ratio by 55% compared to Frequent Value Compression. Compared with the data Comparison Write, ZD-FVC is able to significantly improve the lifetime of NVMM by 3.3X on average, and also reduces NVMM write latency by 31% and energy consumption by 19% on average. © 2020 36th International Conference on Massive Storage Systems and Technology, MSST 2020. All Rights Reserved.

关键词： Dynamic random access storage

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Sensitive vPSA - Exploring Sensitivity in Visual Parameter Space Analysis

arXiv

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arXiv 2022年

作者： Fröhler, Bernhard Elberfeld, Tim Möller, Torsten Hege, Hans-Christian Maurer, Julia Heinzl, Christoph the Research Group X-Ray Computed Tomography University of Applied Sciences Upper Austria Austria the imec-Vision Lab University of Antwerp Belgium Data Science @ Uni Vienna the Faculty of Computer Science University of Vienna Austria Visual and Data-Centric Computing Department Zuse Institut Berlin Germany

The sensitivity of parameters in computational science problems is difficult to assess, especially for algorithms with multiple input parameters and diverse outputs. This work seeks to explore sensitivity analysis in the visualization domain, introducing novel techniques for respective visual analyses of parameter sensitivity in multi-dimensional algorithms. First, the sensitivity analysis background is revisited, highlighting the definition of sensitivity analysis and approaches analyzing global and local sensitivity as well as the differences of sensitivity analysis to the more common uncertainty analysis. We introduce and explore parameter sensitivity using visualization techniques from overviews to details on demand, covering the analysis of all aspects of sensitivity in a prototypical implementation. The respective visualization techniques outline the algorithmic in- and outputs including indications, on how sensitive an input is with regard to the outputs. The detailed sensitivity information is communicated through constellation plots for the exploration of input and output spaces. A matrix view is discussed for localized information on the sensitivity of specific outputs to specific inputs. A 3D view provides the link of the parameter sensitivity to the spatial domain, in which the results of the multi-dimensional algorithms are embedded. The proposed sensitivity analysis techniques are implemented and evaluated in a prototype called Sensitivity Explorer. We show that Sensitivity Explorer reliably identifies the most influential parameters and provides insights into which of the output characteristics these affect as well as to which extent. © 2022, CC BY-NC-SA.

关键词： Sensitivity analysis

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CaloScore v2: Single-shot Calorimeter Shower Simulation with Diffusion Models

arXiv

引用

arXiv 2023年

作者： Mikuni, Vinicius Nachman, Benjamin National Energy Research Scientific Computing Center Berkeley Lab BerkeleyCA94720 United States Physics Division Lawrence Berkeley National Laboratory BerkeleyCA94720 United States Berkeley Institute for Data Science University of California BerkeleyCA94720 United States

Diffusion generative models are promising alternatives for fast surrogate models, producing high-fidelity physics simulations. However, the generation time often requires an expensive denoising process with hundreds of function evaluations, restricting the current applicability of these models in a realistic setting. In this work, we report updates on the CaloScore architecture, detailing the changes in the diffusion process, which produces higher quality samples, and the use of progressive distillation, resulting in a diffusion model capable of generating new samples with a single function evaluation. We demonstrate these improvements using the Calorimeter Simulation Challenge 2022 dataset. © 2023, CC BY.

关键词： Function evaluation

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High-dimensional and Permutation Invariant Anomaly Detection

arXiv

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arXiv 2023年

Methods for anomaly detection of new physics processes are often limited to low-dimensional spaces due to the difficulty of learning high-dimensional probability densities. Particularly at the constituent level, incorporating desirable properties such as permutation invariance and variable-length inputs becomes difficult within popular density estimation methods. In this work, we introduce a permutation-invariant density estimator for particle physics data based on diffusion models, specifically designed to handle variable-length inputs. We demonstrate the efficacy of our methodology by utilizing the learned density as a permutation-invariant anomaly detection score, effectively identifying jets with low likelihood under the background-only hypothesis. To validate our density estimation method, we investigate the ratio of learned densities and compare to those obtained by a supervised classification algorithm. © 2023, CC BY.

关键词： Anomaly detection

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Predicting Alzheimer’s Disease Diagnosis Risk over Time with Survival Machine Learning on the ADNI Cohort

arXiv

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arXiv 2023年

作者： Musto, Henry Stamate, Daniel Pu, Ida Stahl, Daniel Data Science & Soft Computing Lab Computing Department Goldsmiths College University of London United Kingdom Division of Population Health Health Services Research & Primary Care School of Health Sciences University of Manchester United Kingdom Institute of Psychiatry Psychology and Neuroscience Biostatistics and Health Info-matics Department King’s College London London United Kingdom

The rise of Alzheimer’s Disease worldwide has prompted a search for efficient tools which can be used to predict deterioration in cognitive decline leading to dementia. In this paper, we explore the potential of survival machine learning as such a tool for building models capable of predicting not only deterioration but also the likely time to deterioration. We demonstrate good predictive ability (0.86 C-Index), lending support to its use in clinical investigation and prediction of Alzheimer’s Disease risk. © 2023, CC BY.

关键词： Machine learning

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