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IET Renewable Power Generation 2024年第3期18卷 303-305页

作者： Wang, Yishen Zhou, Fei Guerrero, Josep M. Baker, Kyri Chen, Yize Wang, Hao Xu, Bolun Xu, Qianwen Zhu, Hong Agwan, Utkarsha State Grid Laboratory of Grid Advanced Computing and Applications State Grid Smart Grid Research Institute Co. Ltd. Beijing China Department of Energy Technology Aalborg University Aalborg Denmark Department of Civil Environmental and Architectural Engineering University of Colorado-Boulder BoulderCO United States Guangzhou China Department of Data Science and AI Monash University ClaytonVIC Australia Department of Earth and Environmental Engineering Columbia University New YorkNY United States Electric Power and Energy Systems Division KTH Royal Institute of Technology Stockholm Sweden State Grid Jiangsu Electric Power Co. Ltd. Nanjing China Department of Electrical Engineering and Computer Sciences University of California - Berkeley BerkeleyCA United States

Graph Pyramid Autoformer for Long- Term Traffic Forecasting 22

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Graph Pyramid Autoformer for Long- Term Traffic Forecasting

22nd IEEE International Conference on Machine Learning and applications, ICMLA 2023

作者： Zhong, Weiheng Mallick, Tanwi MacFarlane, Jane Meidani, Hadi Balaprakash, Prasanna University of Illinois at Urbana-Champaign Department of Civil Environmental Engineering ChampaignIL United States Mathematics and Computer Science Division Argonne National Laboratory LemontIL United States Sustainable Energy Systems Group Lawrence Berkeley National Laboratory BerkeleyCA United States Computing and Computational Sciences Directorate Oak Ridge National Laboratory Oak RidgeTN United States

ISBN: (纸本)9798350345346

Accurate traffic forecasting is vital to an intelligent transportation system. Although many deep learning models have achieved state-of-art performance for short-term traffic forecasting of up to 1 hour, long-term traffic forecasting that spans multiple hours remains a major challenge. To that end, we develop Graph Pyramid Autoformer (GPA), an attention-based spatial-temporal graph neural network that uses a novel pyramid autocorrelation attention mechanism. It enables learning from long temporal sequences on graphs and improves long-term traffic forecasting accuracy. We demonstrate the efficacy of the GPA using two benchmark traffic datasets: Los Angeles' METR-LA and the Bay Area's PEMS-BAY. Notably, our model has outperformed a range of existing state-of-the-art methods, delivering up to a 25 % improvement in the accuracy of long-term traffic forecasts. Our code is available at: https://***/WeiheneZlExplainable-Graph-Autoformer. © 2023 IEEE.

关键词： Graph Neural Network Long-term forecasting Pyramid Autocorrelation attention

Matrix Factorization for Inferring Associations and Missing Links

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arXiv 2025年

作者： Barron, Ryan Eren, Maksim E. Truong, Duc P. Matuszek, Cynthia Wendelberger, James Dorn, Mary F. Alexandrov, Boian Theoretical Division Los Alamos National Laboratory United States Information Systems and Modeling Los Alamos National Laboratory United States Department of Computer Science and Electrical Engineering University of Maryland Baltimore County United States Computer Computational and Statistical Sciences Los Alamos National Laboratory United States

Missing link prediction is a method for network analysis, with applications in recommender systems, biology, social sciences, cybersecurity, information retrieval, and Artificial Intelligence (AI) reasoning in Knowledge Graphs. Missing link prediction identifies unseen but potentially existing connections in a network by analyzing the observed patterns and relationships. In proliferation detection, this supports efforts to identify and characterize attempts by state and non-state actors to acquire nuclear weapons or associated technology - a notoriously challenging but vital mission for global security. Dimensionality reduction techniques like Non-Negative Matrix Factorization (NMF) and Logistic Matrix Factorization (LMF) are effective but require selection of the matrix rank parameter, that is, of the number of hidden features, k, to avoid over/under-fitting. We introduce novel Weighted (WNMFk), Boolean (BNMFk), and Recommender (RNMFk) matrix factorization methods, along with ensemble variants incorporating logistic factorization, for link prediction. Our methods integrate automatic model determination for rank estimation by evaluating stability and accuracy using a modified bootstrap methodology and uncertainty quantification (UQ), assessing prediction reliability under random perturbations. Additionally, we incorporate Otsu threshold selection and k-means clustering for Boolean matrix factorization, comparing them to coordinate descent-based Boolean thresholding. Our experiments highlight the impact of rank k selection, evaluate model performance under varying test-set sizes, and demonstrate the benefits of UQ for reliable predictions using abstention. We validate our methods on three synthetic datasets (Boolean and Gaussian distributed) and benchmark them against LMF and symmetric LMF (symLMF) on five real-world protein-protein interaction networks, showcasing an improved prediction performance. Copyright © 2025, The Authors. All rights reserved.

关键词： Non-negative matrix factorization

A Communication-Efficient Decentralized Newton's Method with Provably Faster Convergence

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arXiv 2022年

作者： Liu, Huikang Zhang, Jiaojiao So, Anthony Man-Cho Ling, Qing The Research Institute for Interdisciplinary Sciences School of Information Management and Engineering Shanghai University of Finance and Economics China The Division of Decision and Control Systems School of Electrical Engineering and Computer Science Kth Royal Institute of Technology Sweden The Department of Systems Engineering and Engineering Management The Chinese University of Hong Kong Hong Kong The School of Computer Science and Engineering Guangdong Province Key Laboratory of Computational Science Sun Yat-Sen University China The Pazhou Lab China

In this paper, we consider a strongly convex finite-sum minimization problem over a decentralized network and propose a communication-efficient decentralized Newton's method for solving it. The main challenges in designing such an algorithm come from three aspects: (i) mismatch between local gradients/ Hessians and the global ones;(ii) cost of sharing second-order information;(iii) tradeoff among computation and communication. To handle these challenges, we first apply dynamic average consensus (DAC) so that each node is able to use a local gradient approximation and a local Hessian approximation to track the global gradient and Hessian, respectively. Second, since exchanging Hessian approximations is far from communication-efficient, we require the nodes to exchange the compressed ones instead and then apply an error compensation mechanism to correct for the compression noise. Third, we introduce multistep consensus for exchanging local variables and local gradient approximations to balance between computation and communication. With novel analysis, we establish the globally linear (resp., asymptotically super-linear) convergence rate of the proposed method when m is constant (resp., tends to infinity), where m ≥ 1 is the number of consensus inner steps. To the best of our knowledge, this is the first super-linear convergence result for a communication-efficient decentralized Newton's method. Moreover, the rate we establish is provably faster than those of first-order methods. Our numerical results on various applications corroborate the theoretical findings. Copyright © 2022, The Authors. All rights reserved.

关键词： Newton-Raphson method

Graph Pyramid Autoformer for Long- Term Traffic Forecasting

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Graph Pyramid Autoformer for Long- Term Traffic Forecasting

International Conference on Machine Learning and applications (ICMLA)

作者： Weiheng Zhong Tanwi Mallick Jane Macfarlane Hadi Meidani Prasanna Balaprakash Department of Civil Environmental Engineering University of Illinois at Urbana-Champaign Champaign IL Mathematics and Computer Science Division Argonne National Laboratory Lemont IL Lawrence Berkeley National Laboratory Sustainable Energy Systems Group Berkeley CA Oak Ridge National Laboratory Computing and Computational Sciences Directorate Oak Ridge TN

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Artificial intelligence for modelling infectious disease epidemics

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Nature 2025年第8051期638卷 623-635页

作者： Kraemer, Moritz U. G. Tsui, Joseph L.-H. Chang, Serina Y. Lytras, Spyros Khurana, Mark P. Vanderslott, Samantha Bajaj, Sumali Scheidwasser, Neil Curran-Sebastian, Jacob Liam Semenova, Elizaveta Zhang, Mengyan Unwin, H. Juliette T. Watson, Oliver J. Mills, Cathal Dasgupta, Abhishek Ferretti, Luca Scarpino, Samuel V. Koua, Etien Morgan, Oliver Tegally, Houriiyah Paquet, Ulrich Moutsianas, Loukas Fraser, Christophe Ferguson, Neil M. Topol, Eric J. Duchêne, David A. Stadler, Tanja Kingori, Patricia Parker, Michael J. Dominici, Francesca Shadbolt, Nigel Suchard, Marc A. Ratmann, Oliver Flaxman, Seth Holmes, Edward C. Gomez-Rodriguez, Manuel Schölkopf, Bernhard Donnelly, Christl A. Pybus, Oliver G. Cauchemez, Simon Bhatt, Samir Pandemic Sciences Institute University of Oxford Oxford United Kingdom Department of Biology University of Oxford Oxford United Kingdom Department of Electrical Engineering and Computer Science University of California Berkeley Berkeley CA United States UCSF UC Berkeley Joint Program in Computational Precision Health Berkeley CA United States Division of Systems Virology Department of Microbiology and Immunology The Institute of Medical Science The University of Tokyo Tokyo Japan Section of Epidemiology Department of Public Health University of Copenhagen Copenhagen Denmark Oxford Vaccine Group University of Oxford and NIHR Oxford Biomedical Research Centre Oxford United Kingdom Department of Epidemiology and Biostatistics Imperial College London London United Kingdom Department of Computer Science University of Oxford Oxford United Kingdom School of Mathematics University of Bristol Bristol United Kingdom MRC Centre for Global Infectious Disease Analysis School of Public Health Imperial College London London United Kingdom Department of Statistics University of Oxford Oxford United Kingdom Doctoral Training Centre University of Oxford Oxford United Kingdom Institute for Experiential AI Northeastern University MA Boston Thailand Santa Fe Institute Santa Fe NM United States World Health Organization Regional Office for Africa Brazzaville Congo WHO Hub for Pandemic and Epidemic Intelligence Health Emergencies Programme World Health Organization Berlin Germany Centre for Epidemic Response and Innovation (CERI) School for Data Science and Computational Thinking Stellenbosch University Stellenbosch South Africa African Institute for Mathematical Sciences (AIMS) South Africa Muizenberg Cape Town South Africa Genomics England London United Kingdom Scripps Research La Jolla CA United States Department of Biosystems Science and Engineering ETH Zürich Basel Switzerland Swiss Institute of Bioinformatics Lausanne Switzerland The Ethox Centre Nuffield

Infectious disease threats to individual and public health are numerous, varied and frequently unexpected. Artificial intelligence (AI) and related technologies, which are already supporting human decision making in economics, medicine and social science, have the potential to transform the scope and power of infectious disease epidemiology. Here we consider the application to infectious disease modelling of AI systems that combine machine learning, computational statistics, information retrieval and data science. We first outline how recent advances in AI can accelerate breakthroughs in answering key epidemiological questions and we discuss specific AI methods that can be applied to routinely collected infectious disease surveillance data. Second, we elaborate on the social context of AI for infectious disease epidemiology, including issues such as explainability, safety, accountability and ethics. Finally, we summarize some limitations of AI applications in this field and provide recommendations for how infectious disease epidemiology can harness most effectively current and future developments in AI. © Springer Nature Limited 2025.

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Modern deep learning in bioinformatics

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Journal of Molecular Cell Biology 2020年第11期12卷 823-827页

作者： Haoyang Li Shuye Tian Yu Li Qiming Fang Renbo Tan Yijie Pan Chao Huang Ying Xu Xin Gao Cancer Systems Biology Center The China-Japan Union HospitalJilin UniversityChangchun 130033China MOE Key Laboratory of Symbolic Computation and Knowledge Engineering College of Computer Science and TechnologyJilin UniversityChangchun 130012China Department of Biology Southern University of Science and TechnologyShenzhen 518055China Computational Bioscience Research Center(CBRC) Computer Electrical and Mathematical Sciences and Engineering(CEMSE)DivisionKing Abdullah University of Science and Technology(KAUST)Thuwal 23955Saudi Arabia School of Computer Science and Technology Hangzhou Dianzi UniversityHangzhou 310018China Ningbo Institute of Information Technology Application Chinese Academy of SciencesNingbo 315040China Computational Systems Biology Lab Department of Biochemistry and Molecular Biology and Institute of BioinformaticsUniversity of GeorgiaAthensGA 30602USA

Deep learning(DL)has shown explosive growth in its application to bioinformatics and has demonstrated thrillingly promising power to mine the complex relationship hidden in large-scale biological and biomedical data.A number of comprehensive reviews have been published on such applications,ranging from high-level reviews with future perspectives to those mainly serving as tutorials.

关键词： has such she

CARDIOCARE: An integrated platform for the management of elderly multimorbid patients with breast cancer therapy induced cardiac toxicity

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CARDIOCARE: An integrated platform for the management of eld...

Annual International Conference of the IEEE engineering in Medicine and Biology Society (EMBC)

作者： G. Karanasiou L. Koumakis S. Sfakianakis G. Manikis G. Kalliatakis A. Antoniades L. Lakkas D. Mauri C. Cipolla K. Mazzocco A. Papakonstantinou G. Filippatos A. Constantinidou B. Šeruga C. Conti A. Bucur E. Pacella K. Marias M. Tsiknakis D.I. Fotiadis Unit of Medical Technology and Intelligent Information Systems University of Ioannina Ioannina Greece Foundation for Research and Technology - Hellas Institute of Computer Science Heraklion Crete Greece Computational Bio-Medicine Laboratory Institute of Computer Science Foundation for Research and Technology – Hellas Heraklion Greece Stremble Ventures Ltd Limassol Cyprus 2nd Department of Cardiology School of Medicine University of Ioannina Department of Medical Oncology University of Ioannina Greece Cardiology Division European Institute of Oncology Milan Italy Department for Breast Cancer Endocrine Tumors and Sarcoma Theme Cancer Karolinska University Hospital and the Department of Oncology-Pathology Karolinska Institute Stockholm Sweden Department of Cardiology National and Kapodistrian University of Athens School of Medicine Attikon University Hospital Athens Greece Bank of Cyprus Oncology Centre Bank of Cyprus Oncology Centre Nicosia Cyprus Department of Medical Oncology Institute of Oncology Ljubljana Ljubljana Slovenia Istituto di Management Sanitario S.r.l Milano Italy Philips Research Europe Eindhoven Netherlands European Society of Cardiology Brussels Belgium Department of Electrical and Computer Engineering Hellenic Mediterranean University Heraklion Crete Greece Medical Technology and Intelligent Information Systems University of Ioannina Ioannina Greece Biomedical Research Institute Foundation for Research and Technology – Hellas University Campus of Ioannina Greece

Breast cancer (BC) remains the most diagnosed cancer in women, accounting for 12% of new annual cancer cases in Europe and worldwide. Advances in surgery, radiotherapy and systemic treatment have resulted in improved clinical outcomes and increased survival rates in recent years. However, BC therapy-related cardiotoxicity, may severely impact short- and long-term quality of life and survival. This study presents the CARDIOCARE platform and its main components, which by integrating patient-specific data from different categories, data from patient-oriented eHealth applications and wearable devices, and by employing advanced data mining and machine learning approaches, provides the healthcare professionals with a valuable tool for effectively managing BC patients and preventing or alleviating treatment induced *** Relevance— Through the adoption of CARDIOCARE platform healthcare professionals are able to stratify patients for their risk for cardiotoxicity and timely apply adequate interventions to prevent its onset.

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Framing image registration as a landmark detection problem for label-noise-aware task representation (HitR)

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arXiv 2023年

作者： Waldmannstetter, Diana Ezhov, Ivan Wiestler, Benedikt Campi, Francesco Kukuljan, Ivan Ehrlich, Stefan Vinayahalingam, Shankeeth Baheti, Bhakti Chakrabarty, Satrajit Baid, Ujjwal Bakas, Spyridon Schwarting, Julian Metz, Marie Kirschke, Jan S. Rueckert, Daniel Heckemann, Rolf A. Piraud, Marie Menze, Bjoern H. Kofler, Florian Department of Computer Science TUM School of Computation Information and Technology Technical University of Munich Munich Germany Department of Quantitative Biomedicine University of Zurich Zurich Switzerland Department of Diagnostic and Interventional Neuroradiology School of Medicine Klinikum rechts der Isar Technical University of Munich Germany Helmholtz AI Helmholtz Munich Neuherberg Germany TranslaTUM - Central Institute for Translational Cancer Research Technical University of Munich Germany Healthcare Technologies SETLabs Research Munich Germany Department of Oral and Maxillofacial Surgery Radboud University Nijmegen Medical Centre Nijmegen Netherlands Division of Computational Pathology Department of Pathology and Laboratory Medicine School of Medicine Indiana University IndianapolisIN United States Department of Electrical and Systems Engineering Washington University in St.Louis St. LouisMO United States Artificial Intelligence in Healthcare and Medicine Technical University of Munich Munich Germany Department of Computing Imperial College London London United Kingdom Department of Medical Radiation Sciences University of Gothenburg Gothenburg Sweden

Accurate image registration is pivotal in bio-medical image analysis, where selecting suitable registration algorithms demands careful consideration. While numerous algorithms are available, the evaluation metrics to assess their performance have remained relatively static. This study addresses this challenge by introducing a novel evaluation metric termed Landmark Hit Rate (HitR), which focuses on the clinical relevance of image registration accuracy. Unlike traditional metrics such as Target Registration Error, which emphasize sub-resolution differences, HitR considers whether registration algorithms successfully position landmarks within defined confidence zones. This paradigm shift acknowledges the inherent annotation noise in medical images, allowing for more meaningful assessments. To equip HitR with label-noise-awareness, we propose defining these confidence zones based on an Inter-rater Variance analysis. Consequently, hit rate curves are computed for varying landmark zone sizes, enabling performance measurement for a task-specific level of accuracy. Our approach offers a more realistic and meaningful assessment of image registration algorithms, reflecting their suitability for clinical and biomedical applications. Copyright © 2023, The Authors. All rights reserved.

关键词： Medical imaging

Perspectives on spintronic diodes

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arXiv 2021年

作者： Finocchio, Giovanni Tomasello, Riccardo Fang, Bin Giordano, Anna Puliafito, Vito Carpentieri, Mario Zeng, Zhongming Department of Mathematical and Computer Sciences Physical Sciences and Earth Sciences University di Messina MessinaI-98166 Italy Institute of Applied and Computational Mathematics FORTH Heraklion CreteGR-70013 Greece Physical Science and Engineering Division King Abdullah University of Science and Technology Thuwal23955-6900 Saudi Arabia Department of Engineering University of Messina MessinaI-98166 Italy Department of Electrical and Information Engineering Polytechnic of Bari BariI-70125 Italy Key Laboratory of Multifunctional Nanomaterials and Smart Systems Suzhou Institute of Nanotech and Nano-bionics Chinese Academy of Sciences Ruoshui Road 398 Suzhou215123 China

Spintronic diodes are emerging as disruptive candidates for impacting several technological applications ranging from the Internet of Things to Artificial Intelligence. In this letter, an overview of the recent achievements on spintronic diodes is briefly presented, underling the major breakthroughs that have led these devices to have the largest sensitivity measured up to date for a diode. For each class of spintronic diodes (passive, active, resonant, non-resonant), we indicate the remaining developments to improve the performances as well as the future directions. We also dedicate the last part of this perspective to new ideas for developing spintronic diodes in multiphysics systems by combining 2-dimensional materials and antiferromagnets. © 2021, CC BY.

关键词： Diodes