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检索条件"机构=Computational Science and Engineering Program"
872 条 记 录,以下是381-390 订阅
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DeePKS+ABACUS as a Bridge between Expensive Quantum Mechanical Models and Machine Learning Potentials
arXiv
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arXiv 2022年
作者: Li, Wenfei Ou, Qi Chen, Yixiao Cao, Yu Liu, Renxi Zhang, Chunyi Zheng, Daye Cai, Chun Wu, Xifan Wang, Han Chen, Mohan Zhang, Linfeng AI for Science Institute Beijing100080 China Program in Applied and Computational Mathematics Princeton University PrincetonNJ08544 United States HEDPS CAPT College of Engineering School of Physics Peking University Beijing100871 China Department of Physics Temple University PhiladelphiaPA19122 United States Laboratory of Computational Physics Institute of Applied Physics and Computational Mathematics Huayuan Road 6 Beijing100088 China DP Technology Beijing100080 China
Recently, the development of machine learning (ML) potentials has made it possible to perform large-scale and long-time molecular simulations with the accuracy of quantum mechanical (QM) models. However, for high-leve... 详细信息
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Microano-fabrication technologies for cell biology
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Medical & Biological engineering & Computing 2010年 第10期48卷 1023-1032页
作者: Qian, Tongcheng Wang, Yingxiao Department of Bioengineering and the Beckman Institute for Advanced Science and Technology University of Illinois at Urbana–Champaign Urbana USA Department of Biomedical Engineering Peking University Beijing People’s Republic of China Department of Integrative and Molecular Physiology Center for Biophysics and Computational Biology Institute for Genomic Biology Neuroscience Program University of Illinois at Urbana–Champaign Urbana USA
Micro/nano-fabrication techniques, such as soft lithography and electrospinning, have been well-developed and widely applied in many research fields in the past decade. Due to the low costs and simple procedures, thes...
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Improved Accuracy of Cardiac Tissue-Level Simulations by Considering Membrane Resistance as a Cellular-Level Optimization Objective
Improved Accuracy of Cardiac Tissue-Level Simulations by Con...
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Annual International Conference of the IEEE engineering in Medicine and Biology Society (EMBC)
作者: E. Pouranbarani L. A. Berg R. S. Oliveira R. W. dos Santos A. Nygren Department of Electrical and Computer Engineering University of Calgary Alberta Canada Department of Computer Science and the Graduate Program of Computational Modeling Federal University of Juiz de Fora Juiz de Fora Brazil Department of Computer Science University of São João del-Rei São João del-Rei Brazil
Cardiac cellular models are utilized as the building blocks for tissue simulation. One of the imprecisions of conventional cellular modeling, especially when the models are used in tissue-level modeling, stems from th... 详细信息
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Learning Collective Variables with Synthetic Data Augmentation through Physics-Inspired Geodesic Interpolation
arXiv
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arXiv 2024年
作者: Yang, Soojung Nam, Juno Dietschreit, Johannes C.B. Gómez-Bombarelli, Rafael Computational and Systems Biology Program Massachusetts Institute of Technology CambridgeMA02139 United States Department of Materials Science and Engineering Massachusetts Institute of Technology CambridgeMA02139 United States Institute of Theoretical Chemistry Faculty of Chemistry University of Vienna Vienna1090 Austria
In molecular dynamics simulations, rare events, such as protein folding, are typically studied using enhanced sampling techniques, most of which are based on the definition of a collective variable (CV) along which ac... 详细信息
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Concurrency measures in the era of temporal network epidemiology: A review
arXiv
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arXiv 2020年
作者: Masuda, Naoki Miller, Joel C. Holme, Petter Department of Mathematics State University of New York Buffalo United States Computational and Data-Enabled Science and Engineering Program State University of New York Buffalo United States School of Engineering and Mathematical Sciences La Trobe University Australia Institute of Innovative Research Tokyo Institute of Technology Yokohama226-8503 Japan
Diseases spread over temporal networks of interaction events between individuals. Structures of these temporal networks hold the keys to understanding epidemic propagation. One early concept of the literature to aid i... 详细信息
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Waiting-time paradox in 1922
arXiv
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arXiv 2020年
作者: Masuda, Naoki Hiraoka, Takayuki Department of Mathematics University at Buffalo State University of New York BuffaloNY14260-2900 United States Computational and Data-Enabled Science and Engineering Program University at Buffalo State University of New York BuffaloNY14260-5030 United States Department of Computer Science Aalto University Espoo00076 Finland
We present an English translation and discussion of an essay that a Japanese physicist, Torahiko Terada, wrote in 1922. In the essay, he described the waiting-time paradox, also called the bus paradox, which is a know... 详细信息
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Study of self-interaction-errors in barrier heights using locally scaled and Perdew-Zunger self-interaction methods
arXiv
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arXiv 2022年
作者: Mishra, Prakash Yamamoto, Yoh Johnson, J. Karl Jackson, Koblar A. Zope, Rajendra R. Baruah, Tunna Computational Science Program University of Texas at El Paso El PasoTX79968 United States Department of Physics University of Texas El PasoTX79968 United States Department of Chemical & Petroleum Engineering University of Pittsburgh PittsburghPA15261 United States Physics Department Science of Advanced Materials Program Central Michigan University Mt. PleasantMI48859 United States
We study the effect of self-interaction errors on the barrier heights of chemical reactions. For this purpose we use the well-known Perdew-Zunger [J. P. Perdew and A. Zunger, Phys. Rev. B, 23, 5048 (1981)] self-intera... 详细信息
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Quantifying gender imbalance in East Asian academia: Research career and citation practice
arXiv
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arXiv 2023年
作者: Nakajima, Kazuki Liu, Ruodan Shudo, Kazuyuki Masuda, Naoki Department of Mathematical and Computing Science Tokyo Institute of Technology Meguro-ku Tokyo152-8552 Japan Department of Mathematics State University of New York at Buffalo Buffalo14260 United States Academic Center for Computing and Media Studies Kyoto University Sakyo-ku Kyoto606-8501 Japan Computational and Data-Enabled Science and Engineering Program State University of New York at Buffalo Buffalo14260 United States Center for Computational Social Science Kobe University Kobe657-8501 Japan
Gender imbalance in academia has been confirmed in terms of a variety of indicators, and its magnitude often varies from country to country. Europe and North America, which cover a large fraction of research workforce... 详细信息
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Text and data mining for biomedical discovery  18
Text and data mining for biomedical discovery
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18th Pacific Symposium on Biocomputing, PSB 2013
作者: Gonzalez, Graciela Cohen, Kevin Bretonnel Kann, Maricel G. Greene, Casey S. Leaman, Robert Hahn, Udo Shah, Nigam Ye, Jieping Department of Biomedical Informatics Arizona State University ScottsdaleAZ85259 United States Computational Bioscience Program U. Colorado School of Medicine AuroraCO United States Department of Biological Science University of Maryland Baltimore County BaltimoreMD21250 United States Department of Genetics Geisel School of Medicine at Dartmouth HanoverNH03755 United States National Center for Biotechnology Information BethesdaMD20894 United States Friedricdh Schiller University Jena Language and Information Engineering Lab. Jena Germany Stanford Center for Biomedical Informatics Research StanfordCA94305 United States Computer Science and Engineering Arizona State University TempeAZ85287 United States
The biggest challenge for text and data mining is to truly impact the biomedical discovery process, enabling scientists to generate novel hypothesis to address the most crucial questions. Among a number of worthy subm... 详细信息
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Publisher Correction: The ENCODE Imputation Challenge: a critical assessment of methods for cross-cell type imputation of epigenomic profiles
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Genome biology 2025年 第1期26卷 31页
作者: Jacob Matthew Schreiber Carles A Boix Jin Wook Lee Hongyang Li Yuanfang Guan Chun-Chieh Chang Jen-Chien Chang Alex Hawkins-Hooker Bernhard Schölkopf Gabriele Schweikert Mateo Rojas Carulla Arif Canakoglu Francesco Guzzo Luca Nanni Marco Masseroli Mark James Carman Pietro Pinoli Chenyang Hong Kevin Y Yip Jefrey P Spence Sanjit Singh Batra Yun S Song Shaun Mahony Zheng Zhang Wuwei Tan Yang Shen Yuanfei Sun Minyi Shi Jessika Adrian Richard S Sandstrom Nina P Farrell Jessica M Halow Kristen Lee Lixia Jiang Xinqiong Yang Charles B Epstein J Seth Strattan Bradley E Bernstein Michael P Snyder Manolis Kellis William S Noble Anshul Bharat Kundaje Department of Genetics Stanford University Stanford CA USA. jmschreiber91@***. Computer Science and Artificial Intelligence Laboratory Massachusetts Institute of Technology Cambridge MA USA. Department of Genetics Stanford University Stanford CA USA. Department of Computational Medicine and Bioinformatics University of Michigan Ann Arbor MI USA. Department of Research and Development DeepSeq.AI San Francisco CA USA. RIKEN Center for Integrative Medical Sciences Yokohama Japan. Department of Empirical Inference Max Planck Institute for Intelligent Systems Stuttgart Germany. School of Life Sciences University of Dundee Dundee UK. Department of Electronics Information and Bioengineering Politecnico Di Milano Milan Italy. Department of Computational Biology University of Lausanne Lausanne Switzerland. Department of Computer Science and Engineering The Chinese University of Hong Kong Sha Tin Hong Kong. Sanford Burnham Prebys Medical Discovery Institute San Diego CA USA. Department of Electrical Engineering and Computer Sciences University of California Berkeley Berkeley CA USA. Department of Statistics University of California Berkeley Berkeley CA USA. Department of Biochemistry & Molecular Biology Center for Eukaryotic Gene Regulation Pennsylvania State University University Park PA USA. Department of Statistics Pennsylvania State University University Park PA USA. Department of Electrical and Computer Engineering Texas A&M University College Station TX USA. Altius Institute Seattle WA USA. Epigenomics Program The Broad Institute of MIT and Harvard Cambridge MA USA. Department of Genome Sciences University of Washington Seattle WA USA. Department of Computer Science Stanford University Stanford CA USA.
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