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Galactic transient sources with the Cherenkov Telescope Array Observatory

Monthly Notices of the Royal Astronomical Society 2025年第1期540卷 205–238页

作者： Abe, K Abe, S Abhir, J Abhishek, A Acero, F Acharyya, A Adam, R Aguasca-Cabot, A Agudo, I Aguirre-Santaella, A Alfaro, J Alfaro, R Alvarez-Crespo, N Alves Batista, R Amans, J-P Amato, E Ambrosi, G Ambrosino, F Angüner, E O Antonelli, L A Aramo, C Arcaro, C Arnesen, T T H Asano, K Ascasibar, Y Aschersleben, J Ashkar, H Augusto Stuani, L Baack, D Backes, M Balazs, C Balbo, M Baquero Larriva, A Barbosa Martins, V Barres de Almeida, U Barrio, J A Barrios-Jiménez, L Batković, I Batzofin, R Baxter, J Becerra González, J Becker Tjus, J Belmont, R Benbow, W Bernete, J Bernlöhr, K Berti, A Bertucci, B Beshley, V Bhattacharjee, P Bhattacharyya, S Bigongiari, C Bissaldi, E Blanch, O Blazek, J Bocchino, F Boisson, C Bolmont, J Bonnoli, G Bonollo, A Bordas, P Bosnjak, Z Bottacini, E Böttcher, M Bradascio, F Bronzini, E Brown, A M Brunelli, G Bulgarelli, A Burelli, I Burger-Scheidlin, C Burmistrov, L Burton, M Buscemi, M Cailleux, J Campoy-Ordaz, A Cantlay, B K Capasso, G Caproni, A Capuzzo-Dolcetta, R Caraveo, P Caroff, S Carosi, A Carosi, R Carquin, E Carrasco, M-S Cascone, E Cassol, F Castaldini, L Castrejon, N Castro-Tirado, A J Cerasole, D Ceribella, G Cerruti, M Chadwick, P M Chaty, S Chen, A W Chernyakova, M Chiavassa, A Chudoba, J Chytka, L Cicciari, G M Cifuentes, A Coimbra Araujo, C H Colapietro, M Conforti, V Contreras, J L Cortina, J Costa, A Costantini, H Cotter, G Cristofari, P Cuevas, O Curtis-Ginsberg, Z D’Aì, A D’Amico, G D’Ammando, F Dai, S Dazzi, F de Bony de Lavergne, M De Caprio, V De Cesare, G De Frondat Laadim, F de Gouveia Dal Pino, E M De Lotto, B De Lucia, M de Martino, D de Menezes, R de Naurois, M de Ona Wilhelmi, E de Souza, V del Peral, L del Valle, M V Delgado, C Dell’aiera, M Della Valle, M della Volpe, D Depaoli, D Devin, J Di Girolamo, T Di Piano, A Di Pierro, F Di Tria, R Di Venere, L Diebold, S Dignam, C Dima, R Dinesh, A Djuvsland, J Dominik, R M Dominis Prester, D Donini, A Dorner, D Dörner, J Doro, M Dubos, C Ducci, L Dwarkadas, V V Ebr, J Eckner, C Egberts, K Einecke, S Elsässer, D Emery Department of Physics Tokai University 4-1-1 Kita-Kaname Hiratsuka Kanagawa 259-1292 Japan Institute for Cosmic Ray Research University of Tokyo 5-1-5 Kashiwa-no-ha Kashiwa Chiba 277-8582 Japan ETH Zürich Institute for Particle Physics and Astrophysics Otto-Stern-Weg 5 CH-8093 Zürich Switzerland INFN and Università degli Studi di Siena Dipartimento di Scienze Fisiche della Terra e dell’Ambiente (DSFTA) Sezione di Fisica Via Roma 56 I-53100 Siena Italy Université Paris-Saclay Université Paris Cité CEA CNRS AIM F-91191 Gif-sur-Yvette Cedex France FSLAC IRL 2009 CNRS/IAC E-38205 La Laguna Tenerife Spain University of Alabama Tuscaloosa Department of Physics and Astronomy Gallalee Hall Box 870324 Tuscaloosa AL 35487-0324 USA Université Côte d’Azur Observatoire de la Côte d’Azur CNRS Laboratoire Lagrange UF 06304 Nice France Laboratoire Leprince-Ringuet CNRS/IN2P3 École Polytechnique Institut Polytechnique de Paris F-91120 Palaiseau France Departament de Física Quàntica i Astrofísica Institut de Ciències del Cosmos Universitat de Barcelona IEEC-UB Martí i Franquès 1 E-08028 Barcelona Spain Instituto de Astrofísica de Andalucía-CSIC Glorieta de la Astronomía s/n E-18008 Granada Spain Institute for Computational Cosmology and Department of Physics Durham University South Road Durham DH1 3LE UK Pontificia Universidad Católica de Chile Av. Libertador Bernardo O’Higgins 340 8331150 Santiago Chile Universidad Nacional Autónoma de México Delegación Coyoacán 04510 Ciudad de México Mexico IPARCOS-UCM Instituto de Física de Partículas y del Cosmos and EMFTEL Department Universidad Complutense de Madrid E-28040 Madrid Spain Instituto de Física Teórica UAM/CSIC and Departamento de Física Teórica Universidad Autónoma de Madrid c/ Nicolás Cabrera 13-15 Campus de Cantoblanco UAM E-28049 Madrid Spain LUTH GEPI and LERMA Observatoire de Paris Université PSL Université Paris Cité CNRS 5 place Jules Janssen F-92190 Meudon France INAF – Osservatorio

A wide variety of Galactic sources show transient emission at soft and hard X-ray energies: low- and high-mass X-ray binaries containing compact objects, isolated neutron stars exhibiting extreme variability as magnetars as well as pulsar-wind nebulae. Although most of them can show emission up to MeV and/or GeV energies, many have not yet been detected in the TeV domain by Imaging Atmospheric Cherenkov Telescopes. In this paper, we explore the feasibility of detecting new Galactic transients with the Cherenkov Telescope Array Observatory (CTAO) and the prospects for studying them with Target of Opportunity observations. We show that CTAO will likely detect new sources in the TeV regime, such as the massive microquasars in the Cygnus region, low-mass X-ray binaries with low-viewing angle, flaring emission from the Crab pulsar-wind nebula or other novae explosions, among others. Since some of these sources could also exhibit emission at larger time-scales, we additionally test their detectability at longer exposures. We finally discuss the multiwavelength synergies with other instruments and large astronomical facilities.

关键词： binaries: general stars: magnetars novae cataclysmic variables pulsars: general gamma-rays: general

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FUTURE-AI: International consensus guideline for trustworthy and deployable artificial intelligence in healthcare

arXiv

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arXiv 2023年

作者： Lekadir, Karim Feragen, Aasa Fofanah, Abdul Joseph Frangi, Alejandro F. Buyx, Alena Emelie, Anais Lara, Andrea Porras, Antonio R. Chan, An-Wen Navarro, Arcadi Glocker, Ben Botwe, Benard O. Khanal, Bishesh Beger, Brigit Wu, Carol C. Cintas, Celia Langlotz, Curtis P. Rueckert, Daniel Mzurikwao, Deogratias Fotiadis, Dimitrios I. Zhussupov, Doszhan Ferrante, Enzo Meijering, Erik Weicken, Eva González, Fabio A. Asselbergs, Folkert W. Prior, Fred Krestin, Gabriel P. Collins, Gary S. Tegenaw, Geletaw S. Kaissis, Georgios Misuraca, Gianluca Tsakou, Gianna Dwivedi, Girish Kondylakis, Haridimos Jayakody, Harsha Woodruf, Henry C. Mayer, Horst Joachim Aerts, Hugo JWL Walsh, Ian Chouvarda, Ioanna Buvat, Irène Tributsch, Isabell Rekik, Islem Duncan, James Kalpathy-Cramer, Jayashree Zahir, Jihad Park, Jinah Mongan, John Gichoya, Judy W. Schnabel, Julia A. Kushibar, Kaisar Riklund, Katrine Mori, Kensaku Marias, Kostas Amugongo, Lameck M. Fromont, Lauren A. Maier-Hein, Lena Alberich, Leonor Cerdá Rittner, Leticia Phiri, Lighton Marrakchi-Kacem, Linda Donoso-Bach, Lluís Martí-Bonmatí, Luis Cardoso, M. Jorge Bobowicz, Maciej Shabani, Mahsa Tsiknakis, Manolis Zuluaga, Maria A. Bielikova, Maria Fritzsche, Marie-Christine Camacho, Marina Linguraru, Marius George Wenzel, Markus De Bruijne, Marleen Tolsgaard, Martin G. Ghassemi, Marzyeh Ashrafuzzaman, Md Goisauf, Melanie Yaqub, Mohammad Abadía, Mónica Cano Mahmoud, Mukhtar M.E. Elattar, Mustafa Rieke, Nicola Papanikolaou, Nikolaos Lazrak, Noussair Díaz, Oliver Salvado, Olivier Pujol, Oriol Sall, Ousmane Guevara, Pamela Gordebeke, Peter Lambin, Philippe Brown, Pieta Abolmaesumi, Purang Dou, Qi Lu, Qinghua Osuala, Richard Nakasi, Rose Zhou, S. Kevin Napel, Sandy Colantonio, Sara Albarqouni, Shadi Joshi, Smriti Carter, Stacy Klein, Stefan Petersen, Steffen E. Aussó, Susanna Awate, Suyash Raviv, Tammy Riklin Cook, Tessa Mutsvangwa, Tinashe E.M. Rogers, Wendy A. Niessen, Wiro J. Puig-Bosch, Xènia Zeng, Yi Mohammed, Yunusa G. Aquino, Yves Saint James Salahuddin, Zohaib Starmans, Martijn P.A. Department de Matemàtiques i Informàtica Universitat de Barcelona Barcelona Spain Barcelona Spain DTU Compute Technical University of Denmark Kgs Lyngby Denmark Department of Mathematics and Computer Science Faculty of Science and Technology Milton Margai Technical University Freetown Sierra Leone Center for Computational Imaging & Simulation Technologies in Biomedicine Schools of Computing and Medicine University of Leeds Leeds United Kingdom Cardiovascular Science and Electronic Engineering Departments KU Leuven Leuven Belgium Institute of History and Ethics in Medicine Technical University of Munich Munich Germany Faculty of Engineering of Systems Informatics and Sciences of Computing Galileo University Guatemala City Guatemala Department of Biostatistics and Informatics Colorado School of Public Health University of Colorado Anschutz Medical Campus AuroraCO United States Department of Medicine Women’s College Research Institute University of Toronto Toronto Canada Universitat Pompeu Fabra BarcelonaBeta Brain Research Center Barcelona Spain Department of Computing Imperial College London London United Kingdom School of Biomedical & Allied Health Sciences University of Ghana Accra Ghana Department of Midwifery & Radiography School of Health & Psychological Sciences City University of London United Kingdom Kathmandu Nepal European Heart Network Brussels Belgium Department of Thoracic Imaging University of Texas MD Anderson Cancer Center Houston United States IBM Research Africa Nairobi Kenya Departments of Radiology Medicine and Biomedical Data Science Stanford University School of Medicine Stanford United States Institute for AI and Informatics in Medicine Klinikum rechts der Isar Technical University Munich Munich Germany Department of Computing Imperial College London London United Kingdom Muhimbili University of Health and Allied Sciences Dar es Salaam Tanzania United Republic of Ioannina Greece Almaty AI Lab Almaty Kazakhstan

Background: Despite major advances in artificial intelligence (AI) research for healthcare, the deployment and adoption of AI technologies remain limited in clinical practice. In recent years, concerns have been raised about the clinical, technical, ethical and legal risks associated with healthcare AI. To increase adoption in the real world, it is essential that AI technologies are trusted and accepted by patients, clinicians, health organisations and authorities. This paper describes the FUTURE-AI framework as the first international consensus guideline for trustworthy AI in healthcare. Methods: The FUTURE-AI consortium was founded in 2021 and now comprises 117 interdisciplinary experts from 50 countries representing all continents, including AI scientists, clinical researchers, biomedical ethicists, and social scientists. Over a two-year period, the consortium established guiding principles and best practices for trustworthy and deployable AI through an iterative process comprising an in-depth literature review, a modified Delphi survey, and online consensus meetings. Findings: The FUTURE-AI framework was established based on six guiding principles for trustworthy AI in healthcare, i.e. Fairness, Universality, Traceability, Usability, Robustness and Explainability. Through consensus, a set of 30 best practices were defined, addressing technical, clinical, socio-ethical and legal dimensions of trustworthy AI. The recommendations cover the entire lifecycle of healthcare AI, from design, development and validation to regulation, deployment, and monitoring. Interpretation: FUTURE-AI is a structured, risk-informed framework which provides guidance for constructing healthcare AI tools that will be trusted, deployed and adopted in real-world clinical practice. Researchers are encouraged to take the recommendations into account in proof-of-concept stages to facilitate future translation towards clinical practice of healthcare AI. Copyright © 2023, The Authors. All rights

关键词： Clinical research

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Euclid: Early Release Observations – A preview of the Euclid era through a galaxy cluster magnifying lens

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Astronomy and Astrophysics 2025年 697卷

作者： Atek, H. Gavazzi, R. Weaver, J.R. Diego, J.M. Schrabback, T. Hatch, N.A. Aghanim, N. Dole, H. Hartley, W.G. Taamoli, S. Congedo, G. Jimenez-Teja, Y. Cuillandre, J.-C. Bañados, E. Belladitta, S. Bowler, R.A.A. Franco, M. Jauzac, M. Mahler, G. Richard, J. Rocci, P.-F. Serjeant, S. Toft, S. Abriola, D. Bergamini, P. Biviano, A. Dimauro, P. Ezziati, M. Golden-Marx, J.B. Grillo, C. Hughes, A.C.N. Kang, Y. Kneib, J.-P. Lombardi, M. Mamon, G.A. McPartland, C.J.R. Meneghetti, M. Miyatake, H. Montes, M. Mortlock, D.J. Oesch, P.A. Okabe, N. Rosati, P. Taylor, A.N. Tarsitano, F. Weller, J. Kluge, M. Laureijs, R. Paltani, S. Saifollahi, T. Schirmer, M. Stone, C. Mora, A. Altieri, B. Amara, A. Andreon, S. Auricchio, N. Baldi, M. Balestra, A. Bardelli, S. Basset, A. Bender, R. Bodendorf, C. Bonino, D. Branchini, E. Brescia, M. Brinchmann, J. Camera, S. Candini, G.P. Capobianco, V. Carbone, C. Cardone, V.F. Carretero, J. Casas, S. Castander, F.J. Castellano, M. Cavuoti, S. Cimatti, A. Conselice, C.J. Conversi, L. Copin, Y. Corcione, L. Courbin, F. Courtois, H.M. Da Silva, A. Degaudenzi, H. Di Giorgio, A.M. Dinis, J. Douspis, M. Dubath, F. Dupac, X. Dusini, S. Ealet, A. Farina, M. Farrens, S. Ferriol, S. Fotopoulou, S. Frailis, M. Franceschi, E. Galeotta, S. Gillard, W. Gillis, B. Giocoli, C. Gómez-Alvarez, P. Grazian, A. Grupp, F. Guzzo, L. Hailey, M. Haugan, S.V.H. Hoar, J. Hoekstra, H. Holliman, M.S. Institut d’Astrophysique de Paris UMR 7095 CNRS Sorbonne Université 98 bis boulevard Arago Paris75014 France Aix-Marseille Université CNRS CNES LAM Marseille France Department of Astronomy University of Massachusetts AmherstMA01003 United States Instituto de Física de Cantabria Edificio Juan Jordá Avenida de los Castros Santander39005 Spain Universität Innsbruck Institut für Astro- und Teilchenphysik Technikerstr. 25/8 Innsbruck6020 Austria School of Physics and Astronomy University of Nottingham University Park NottinghamNG7 2RD United Kingdom Université Paris-Saclay CNRS Institut d’astrophysique spatiale Orsay91405 France Department of Astronomy University of Geneva ch. d’Ecogia 16 Versoix1290 Switzerland Physics and Astronomy Department University of California 900 University Ave. RiversideCA92521 United States Institute for Astronomy University of Edinburgh Royal Observatory Blackford Hill EdinburghEH9 3HJ United Kingdom Instituto de Astrofísica de Andalucía CSIC Glorieta de la Astronomía Granada18080 Spain Observatorio Nacional Rua General Jose Cristino 77-Bairro Imperial de Sao Cristovao Rio de Janeiro20921-400 Brazil Université Paris-Saclay Université Paris Cité CEA CNRS AIM Gif-sur-Yvette91191 France Max-Planck-Institut für Astronomie Königstuhl 17 Heidelberg69117 Germany INAF-Osservatorio di Astrofisica e Scienza dello Spazio di Bologna Via Piero Gobetti 93/3 Bologna40129 Italy Jodrell Bank Centre for Astrophysics Department of Physics and Astronomy University of Manchester Oxford Road ManchesterM13 9PL United Kingdom The University of Texas at Austin AustinTX78712 United States Department of Physics Centre for Extragalactic Astronomy Durham University South Road DH1 3LE United Kingdom Department of Physics Institute for Computational Cosmology Durham University South Road DH1 3LE United Kingdom Astrophysics Research Centre University of KwaZulu-Natal Westville Campus Durban4041 South Africa School of

We present the first analysis of the Euclid Early Release Observations (ERO) program that targets fields around two lensing clusters, Abell 2390 and Abell 2764. We use imaging data from the Visible instrument (VIS) and the Near-Infrared Spectrometer and Photometer (NISP) to produce photometric catalogs for a total of ∼500 000 objects. The imaging data reach a typical depth of 5 σ in the range 25.1–25.4 AB in the NISP bands and 27.1–27.3 AB in the VIS band. Using the Lyman-break method in combination with photometric redshifts, we searched for high-redshift galaxies. We identified 30 Lyman-break galaxy (LBG) candidates at z > 6 and 139 extremely red sources (ERSs), most of which likely lie at lower redshift. The VIS imaging is deeper than the NISP imaging, which means that we can routinely identify high-redshift Lyman-break galaxies at about a magnitude of 3, which reduces contamination by brown dwarf stars and low-redshift galaxies. The difficulty of spatially resolving most of these sources in 0′′ . 3 pix−1 imaging means that it is difficult to distinguish between galaxies and quasars. Spectroscopic follow-up campaigns of these bright sources will help us to constrain the bright end of the ultraviolet galaxy luminosity function and the quasar luminosity function at z > 6, and it will constrain the physical nature of these objects. Additionally, we performed a combined strong- and weak-lensing analysis of A2390, and we show that Euclid will contribute to constraining the virial mass of galaxy clusters better. We also identify optical and near-infrared counterparts of known z > 0.6 clusters in these data. These counterparts exhibit strong-lensing features. This establishes that Euclid can characterize high-redshift clusters. Finally, we provide a glimpse of the ability of Euclid to map the intracluster light out to larger radii than current facilities, which enables us to understand the cluster assembly history better and to map the dark matter distribution. This ini

关键词： Moon

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Author Correction: The high-dimensional space of human diseases built from diagnosis records and mapped to genetic loci

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Nature computational science 2023年第7期3卷 658页

作者： Gengjie Jia Yu Li Xue Zhong Kanix Wang Milton Pividori Rabab Alomairy Aniello Esposito Hatem Ltaief Chikashi Terao Masato Akiyama Koichi Matsuda David E Keyes Hae Kyung Im Takashi Gojobori Yoichiro Kamatani Michiaki Kubo Nancy J Cox James Evans Xin Gao Andrey Rzhetsky Shenzhen Branch Guangdong Laboratory of Lingnan Modern Agriculture Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs Agricultural Genomics Institute at Shenzhen Chinese Academy of Agricultural Sciences Shenzhen China. jiagengjie@***. Computational Bioscience Research Center King Abdullah University of Science and Technology Thuwal Saudi Arabia. Computer Science Program Computer Electrical and Mathematical Sciences and Engineering Division King Abdullah University of Science and Technology Thuwal Saudi Arabia. Department of Computer Science and Engineering The Chinese University of Hong Kong Hong Kong People's Republic of China. Department of Medicine and Vanderbilt Genetics Institute Vanderbilt University Medical Center Nashville TN US. Department of Medicine Institute of Genomics and Systems Biology Committee on Genomics Genetics and Systems Biology University of Chicago Chicago IL US. Department of Operations Business Analytics and Information Systems University of Cincinnati Cincinnati OH US. Department of Systems Pharmacology and Translational Therapeutics Perelman School of Medicine University of Pennsylvania Philadelphia PA US. Extreme Computing Research Center Computer Electrical and Mathematical Sciences and Engineering Division King Abdullah University of Science and Technology Thuwal Saudi Arabia. College of Computer Science and Engineering University of Jeddah Jeddah Saudi Arabia. HPE HPC/AI EMEA Research Laboratory Bristol UK. RIKEN Center for Integrative Medical Sciences Yokohama Japan. Clinical Research Center Shizuoka General Hospital Shizuoka Japan. Department of Applied Genetics The School of Pharmaceutical Sciences University of Shizuoka Shizuoka Japan. Department of Ophthalmology Graduate School of Medical Sciences Kyushu University Fukuoka Japan. Department of Computational Biology and Medical Sciences Graduate School of Frontier Sciences The University of Tokyo Tokyo Japan. Biological and Environmenta

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The doctor will polygraph you now

Npj health systems

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Npj health systems 2024年第1期1卷 1页

作者： James Anibal Jasmine Gunkel Shaheen Awan Hannah Huth Hang Nguyen Tram Le Jean-Christophe Bélisle-Pipon Micah Boyer Lindsey Hazen Yael Bensoussan David Clifton Bradford Wood Center for Interventional Oncology Clinical Center National Institutes of Health (NIH) Bethesda MD USA. Computational Health Informatics Lab Institute of Biomedical Engineering Department of Engineering Science University of Oxford Oxford UK. Department of Bioethics National Institutes of Health (NIH) Bethesda MD USA. Department of Communication Sciences & Disorders University of Central Florida Orlando FL USA. Global Infectious Disease Program Georgetown University Washington DC USA. College of Engineering University of South Florida Tampa FL USA. Faculty of Health Sciences Simon Fraser University Burnaby BC Canada. USF Health Voice Center Department of Otolaryngology-Head & Neck Surgery University of South Florida Tampa FL USA.

Artificial intelligence (AI) methods have been proposed for the prediction of social behaviors that could be reasonably understood from patient-reported information. This raises novel ethical concerns about respect, privacy, and control over patient data. Ethical concerns surrounding clinical AI systems for social behavior verification can be divided into two main categories: (1) the potential for inaccuracies/biases within such systems, and (2) the impact on trust in patient-provider relationships with the introduction of automated AI systems for "fact-checking", particularly in cases where the data/models may contradict the patient. Additionally, this report simulated the misuse of a verification system using patient voice samples and identified a potential LLM bias against patient-reported information in favor of multi-dimensional data and the outputs of other AI methods (i.e., "AI self-trust"). Finally, recommendations were presented for mitigating the risk that AI verification methods will cause harm to patients or undermine the purpose of the healthcare system.

关键词： Ethics Machine learning science, technology and society

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Core Collapse Supernova Gravitational Wave Emission for Progenitors of 9.6, 15, and 25 M☉

arXiv

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arXiv 2022年

作者： Mezzacappa, Anthony Marronetti, Pedro Landfield, Ryan E. Lentz, Eric J. Hix, W. Raphael Harris, J. Austin Bruenn, Stephen W. Blondin, John M. Messer, O.E. Bronson Casanova, Jordi Kronzer, Luke L. Department of Physics and Astronomy University of Tennessee 1408 Circle Drive KnoxvilleTN37996-1200 United States Physics Division National Science Foundation AlexandriaVA22314 United States National Center for Computational Sciences Oak Ridge National Laboratory P.O. Box 2008 Oak RidgeTN37831-6164 United States Physics Division Oak Ridge National Laboratory P.O. Box 2008 Oak RidgeTN37831-6354 United States Joint Institute for Nuclear Physics and its Applications Oak Ridge National Laboratory P.O. Box 2008 Oak RidgeTN37831-6374 United States Department of Physics Florida Atlantic University 777 Glades Road Boca RatonFL33431-0991 United States Department of Physics North Carolina State University RaleighNC27695-8202 United States Physics Program Community College of Denver P.O. Box 173363 DenverCO80217-3363 United States Department of Aerospace Engineering and Mechanics University of Alabama Box 870280 TuscaloosaAL35487-0280 United States

We present gravitational wave emission predictions based on three core collapse supernova simulations corresponding to three different progenitor masses. The masses span a large range, between 9.6 and 25 M☉ , are all initially non-rotating, and are of two metallicities: zero and Solar. We compute both the temporal evolution of the gravitational wave strains for both the plus and the cross polarizations, as well as their spectral decomposition and characteristic strains. The temporal evolution of our zero metallicity, 9.6 M☉ progenitor model is distinct from the temporal evolution of our Solar metallicity, 15 M☉ progenitor model and our zero metallicity, 25 M☉ progenitor model. In the former case, the high-frequency gravitational wave emission is largely confined to a brief time period ∼75 ms after bounce, whereas in the latter two cases, high-frequency emission does not commence until ∼125 ms after bounce or later. Nonetheless, the physical origin of the high-frequency emission in all three cases corresponds to convection in the proto-neutron star of both Schwarzschild and Ledoux type, and convective overshoot. The low-frequency emission in all three models exhibits very similar behavior. At frequencies below ∼250 Hz, gravitational waves are emitted by neutrino-driven convection and the SASI. This emission extends throughout the simulations when a gain region is present. In all three models, explosion is observed, at ∼125, ∼500, and ∼250 ms after bounce in the 9.6, 15, and 25 M☉ progenitor models, respectively. At these times, the low-frequency gravitational wave emission is joined by very low frequency emission, below ∼10 Hz. These very low frequency episodes are the result of explosion and begin at the above designated explosion times in each of our models. Our characteristic strains tell us that in principle all three gravitational wave signals would be detectable by current-generation detectors for a supernova at a distance of 10 kpc. However, our 9.6 M☉ progeni

关键词： Strain

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Polygenic enrichment distinguishes disease associations of individual cells in single-cell RNA-seq data

Research Square

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Research Square 2021年

作者： Zhang, Martin Jinye Hou, Kangcheng Pasaniuc, Bogdan Price, Alkes L. Dey, Kushal K. Jagadeesh, Karthik A. Weinand, Kathryn Sakaue, Saori Taychameekiatchai, Aris Rao, Poorvi Pisco, Angela Oliveira Zou, James Wang, Bruce Gandal, Michael Raychaudhuri, Soumya Harvard University United States Osaka University Japan Department of Epidemiology Harvard T.H. Chan School of Public Health BostonMA United States Program in Medical and Population Genetics Broad Institute of MIT and Harvard CambridgeMA United States Bioinformatics Interdepartmental Program University of California Los Angeles Los AngelesCA United States Department of Pathology and Laboratory Medicine David Geffen School of Medicine University of California Los Angeles Los AngelesCA United States Department of Computational Medicine David Geffen School of Medicine University of California Los Angeles Los AngelesCA United States Center for Data Sciences Brigham and Women’s Hospital BostonMA United States Division of Genetics Department of Medicine Brigham and Women’s Hospital Harvard Medical School BostonMA United States Division of Rheumatology Inflammation and Immunity Department of Medicine Brigham and Women’s Hospital Harvard Medical School BostonMA United States Department of Biomedical Informatics Harvard Medical School BostonMA United States Department of Medicine and Liver Center University of California San Francisco San FranciscoCA United States Developmental and Stem Cell Biology Graduate Program University of California San Francisco San FranciscoCA United States Chan Zuckerberg Biohub San FranciscoCA United States Department of Electrical Engineering Stanford University Palo AltoCA United States Department of Biomedical Data Science Stanford University Palo AltoCA United States Department of Psychiatry David Geffen School of Medicine University of California Los Angeles Los AngelesCA United States Department of Human Genetics David Geffen School of Medicine University of California Los Angeles Los AngelesCA United States Program in Neurobehavioral Genetics Semel Institute David Geffen School of Medicine University of California Los Angeles Los AngelesCA United States Versus Arthritis Centre for Genetics and Genomic

Gene expression at the individual cell-level resolution, as quantified by single-cell RNA-sequencing (scRNA-seq), can provide unique insights into the pathology and cellular origin of diseases and complex traits. Here, we introduce single-cell Disease Relevance Score (scDRS), an approach that links scRNA-seq with polygenic risk of disease at individual cell resolution;scDRS identifies individual cells that show excess expression levels for genes in a disease-specific gene set constructed from GWAS data. We determined via simulations that scDRS is well-calibrated and powerful in identifying individual cells associated to disease. We applied scDRS to GWAS data from 74 diseases and complex traits (average N =341K) in conjunction with 16 scRNA-seq data sets spanning 1.3 million cells from 31 tissues and organs. At the cell type level, scDRS broadly recapitulated known links between classical cell types and disease, and also produced novel biologically plausible findings. At the individual cell level, scDRS identified subpopulations of disease-associated cells that are not captured by existing cell type labels, including subpopulations of CD4+ T cells associated with inflammatory bowel disease, partially characterized by their effector-like states;subpopulations of hippocampal CA1 pyramidal neurons associated with schizophrenia, partially characterized by their spatial location at the proximal part of the hippocampal CA1 region;and subpopulations of hepatocytes associated with triglyceride levels, partially characterized by their higher ploidy levels. At the gene level, we determined that genes whose expression across individual cells was correlated with the scDRS score (thus reflecting co-expression with GWAS disease genes) were strongly enriched for gold-standard drug target and Mendelian disease genes. © 2021, CC BY.

关键词： RNA

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Identifying the best machine learning algorithms for brain tumor segmentation, progression assessment, and overall survival prediction in the BRATS challenge

arXiv

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arXiv 2018年

作者： Bakas, Spyridon Reyes, Mauricio Jakab, Andras Bauer, Stefan Rempfler, Markus Crimi, Alessandro Shinohara, Russell Takeshi Berger, Christoph Ha, Sung Min Rozycki, Martin Prastawa, Marcel Alberts, Esther Lipkova, Jana Freymann, John Kirby, Justin Bilello, Michel Fathallah-Shaykh, Hassan M. Wiest, Roland Kirschke, Jan Wiestler, Benedikt Colen, Rivka Kotrotsou, Aikaterini Lamontagne, Pamela Marcus, Daniel Milchenko, Mikhail Nazeri, Arash Weber, Marc-Andr Mahajan, Abhishek Baid, Ujjwal Gerstner, Elizabeth Kwon, Dongjin Acharya, Gagan Agarwal, Manu Alam, Mahbubul Albiol, Alberto Albiol, Antonio Albiol, Francisco J. Alex, Varghese Allinson, Nigel Amorim, Pedro H.A. Amrutkar, Abhijit Anand, Ganesh Andermatt, Simon Arbel, Tal Arbelaez, Pablo Avery, Aaron Azmat, Muneeza Pranjal, B. Bai, Wenjia Banerjee, Subhashis Barth, Bill Batchelder, Thomas Batmanghelich, Kayhan Battistella, Enzo Beers, Andrew Belyaev, Mikhail Bendszus, Martin Benson, Eze Bernal, Jose Bharath, Halandur Nagaraja Biros, George Bisdas, Sotirios Brown, James Cabezas, Mariano Cao, Shilei Cardoso, Jorge M. Carver, Eric N. Casamitjana, Adri Castillo, Laura Silvana Cat, Marcel Cattin, Philippe Cérigues, Albert Chagas, Vinicius S. Chandra, Siddhartha Chang, Yi-Ju Chang, Shiyu Chang, Ken Chazalon, Joseph Chen, Shengcong Chen, Wei Chen, Jefferson W. Chen, Zhaolin Cheng, Kun Choudhury, Ahana Roy Chylla, Roger Clrigues, Albert Colleman, Steven Colmeiro, Ramiro German Rodriguez Combalia, Marc Costa, Anthony Cui, Xiaomeng Dai, Zhenzhen Dai, Lutao Daza, Laura Alexandra Deutsch, Eric Ding, Changxing Dong, Chao Dong, Shidu Dudzik, Wojciech Eaton-Rosen, Zach Egan, Gary Escudero, Guilherme Estienne, Tho Everson, Richard Fabrizio, Jonathan Fan, Yong Fang, Longwei Feng, Xue Ferrante, Enzo Fidon, Lucas Fischer, Martin French, Andrew P. Fridman, Naomi Fu, Huan Fuentes, David Gao, Yaozong Gates, Evan Gering, David Gholami, Amir Gierke, Willi Glocker, Ben Gong, Mingming Gonzlez-Vill, Sandra Grosges, T. Guan, Yuanfang Guo, Sheng Gupta, Sudeep Han, Woo-Sup Han, Il Song Harmuth, Ko Center for Biomedical Image Computing and Analytics University of Pennsylvania PhiladelphiaPA United States Department of Radiology Perelman School of Medicine University of Pennsylvania PhiladelphiaPA United States Department of Pathology and Laboratory Medicine Perelman School of Medicine University of Pennsylvania PhiladelphiaPA United States Institute for Surgical Technology and Biomechanics University of Bern Bern Switzerland Center for MR-Research University Children's Hospital Zurich Zurich Switzerland Support Centre for Advanced Neuroimaging Inselspital Institute for Diagnostic and Interventional Neuroradiology Bern University Hospital Bern Switzerland University Hospital of Zurich Zurich Switzerland Center for Clinical Epidemiology and Biostatistics University of Pennsylvania Philadelphia United States Image-Based Biomedical Modeling Group Technical University of Munich Munich Germany Icahn School of Medicine Mount Sinai Health System New YorkNY United States Leidos Biomedical Research Inc. Frederick National Laboratory for Cancer Research FrederickMD21701 United States Cancer Imaging Program National Cancer Institute National Institutes of Health BethesdaMD20814 United States Department of Neurology University of Alabama at Birmingham BirminghamAL United States Department of Diagnostic Radiology University of Texas MD Anderson Cancer Center HoustonTX United States Department of Psychology Washington University St. LouisMO United States Neuroimaging Informatics and Analysis Center Washington University St. LouisMO United States Department of Radiology Washington University St. LouisMO United States Institute of Diagnostic and Interventional Radiology Pediatric Radiology and Neuroradiology University Medical Center Rostock Ernst-Heydemann-Str. 6 Rostock18057 Germany Tata Memorial Centre Homi Bhabha National Institute Mumbai India Shri Guru Gobind Singhji Institute of Engineering and Technology Nanded India NVIDIA Santa Clara

Gliomas are the most common primary brain malignancies, with different degrees of aggressiveness, variable prognosis and various heterogeneous histologic sub-regions, i.e., peritumoral edematous/invaded tissue, necrotic core, active and non-enhancing core. This intrinsic heterogeneity is also portrayed in their radio-phenotype, as their sub-regions are depicted by varying intensity profiles disseminated across multi-parametric magnetic resonance imaging (mpMRI) scans, reflecting varying biological properties. Their heterogeneous shape, extent, and location are some of the factors that make these tumors difficult to resect, and in some cases inoperable. The amount of resected tumor is a factor also considered in longitudinal scans, when evaluating the apparent tumor for potential diagnosis of progression. Furthermore, there is mounting evidence that accurate segmentation of the various tumor sub-regions can offer the basis for quantitative image analysis towards prediction of patient overall survival. This study assesses the state-of-the-art machine learning (ML) methods used for brain tumor image analysis in mpMRI scans, during the last seven instances of the International Brain Tumor Segmentation (BraTS) challenge, i.e., 2012-2018. Specifically, we focus on i) evaluating segmentations of the various glioma sub-regions in pre-operative mpMRI scans, ii) assessing potential tumor progression by virtue of longitudinal growth of tumor sub-regions, beyond use of the RECIST/RANO criteria, and iii) predicting the overall survival from pre-operative mpMRI scans of patients that underwent gross total resection. Finally, we investigate the challenge of identifying the best ML algorithms for each of these tasks, considering that apart from being diverse on each instance of the challenge, the multi-institutional mpMRI BraTS dataset has also been a continuously evolving/growing dataset. Copyright © 2018, The Authors. All rights reserved.

关键词： Tumors

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Preventing bad behavior in academia

引用

四川生理科学杂志 2024年第7期46卷 1615-1615页

作者： Rayane da Cruz Albino Faculty of Pharmacy Federal University of Rio de Janeiro Rio de Janeiro RJ Brazil. Department of Host-Microbe Interactions St. Jude Children’s Research Hospital Memphis TN USA. School of the Environment The University of Queensland Whiterock QLD Australia. KU Leuven Ghent Belgium. Laboratory for Computational Social Systems Indraprastha Institute of Information Technology Delhi New Delhi India. University Medical College Shantou Guangdong China. Department of Ecoscience Aarhus Universitet Aarhus Denmark. Institute of Environment and Sustainable Development Banaras Hindu University Varanasi Uttar Pradesh India. Department of Medical Parasitology Faculty of Medicine and Health Sciences Sana’a University Sana’a Yemen and Tropical Disease Research Center Faculty of Medicine and Health Sciences University of Science and Technology Sana’a Yemen. Department of Medicine University of Montreal Montreal QC Canada. Electricity Infrastructure and Buildings Division Pacific Northwest National Laboratory Portland OR USA. Department of Biological Sciences University of New Brunswick Saint John Saint John NB Canada. Department of Biomedical Engineering The University of Melbourne Melbourne VIC Australia. Vagelos Molecular Life Sciences Program University of Pennsylvania Philadelphia PA USA. Doctoral Program in Neurobiology and Behavior Columbia University New York NY USA. Department of Genetics and Genomic Sciences Icahn School of Medicine at Mount Sinai New York NY USA. Department of Engineering University of Cambridge Cambridge Cambridgeshire UK. Department of Geography Liverpool John Moores University Liverpool UK. Department of Biology Stanford University Stanford CA USA. Department of Psychology University of Nicosia Nicosia Cyprus. Department of Global Ecology Carnegie Institution for Science Stanford CA USA. Research and Support Division Stellenbosch University Cape Town South Africa.

We gave young scientists this prompt:Describe one change to scientific policy or culture that would substantially decrease incidents of scientific misconduct or other unethical behavior.

关键词： behavior. prompt culture

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Correction: Single-cell RNA-sequencing identifies anti-cancer immune phenotypes in the early lung metastatic niche during breast cancer

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Clinical & experimental metastasis 2023年第4期40卷 373页

作者： Sophia M Orbach Michael D Brooks Yining Zhang Scott E Campit Grace G Bushnell Joseph T Decker Ryan J Rebernick Sriram Chandrasekaran Max S Wicha Jacqueline S Jeruss Lonnie D Shea Department of Biomedical Engineering University of Michigan Ann Arbor MI USA. Department of Internal Medicine University of Michigan Ann Arbor MI USA. Department of Chemical Engineering University of Michigan Ann Arbor MI USA. Program in Chemical Biology University of Michigan Ann Arbor MI USA. Medical Science Training Program University of Michigan Ann Arbor MI USA. Department of Computational Medicine and Bioinformatics University of Michigan Ann Arbor MI USA. Rogel Cancer Center University of Michigan Ann Arbor MI USA. Department of Surgery University of Michigan Ann Arbor MI USA. Department of Pathology University of Michigan Ann Arbor MI USA. Department of Biomedical Engineering University of Michigan Ann Arbor MI USA. ldshea@umich.edu. Department of Chemical Engineering University of Michigan Ann Arbor MI USA. ldshea@umich.edu. Rogel Cancer Center University of Michigan Ann Arbor MI USA. ldshea@umich.edu.

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