We introduce a framework for feature selection based on dependence maximization between the selected features and the labels of an estimation problem, using the Hilbert-Schmidt Independence Criterion. The key idea is ...
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We introduce a framework for feature selection based on dependence maximization between the selected features and the labels of an estimation problem, using the Hilbert-Schmidt Independence Criterion. The key idea is that good features should be highly dependent on the labels. Our approach leads to a greedy procedure for feature selection. We show that a number of existing feature selectors are special cases of this framework. Experiments on both artificial and real-world data show that our feature selector works well in practice.
Identifying transcription factor binding sites (TFBSs) is crucial for understanding the mechanism of transcriptional regulation. It is known that transcription factors (TFs) often cooperate to regulate genes. While tr...
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In the current era of technology,the Internet and web technologies become the center source of *** to the huge amount of contents,one of the main challenges of modern information technology is aimed at how to reduce a...
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In the current era of technology,the Internet and web technologies become the center source of *** to the huge amount of contents,one of the main challenges of modern information technology is aimed at how to reduce and manage information in a structured way with mobilizing users to the similar kind of relevant ***,any intelligent system should be able to understand people's interest about a particular type of information and automatically mobilize him to the similar kind of available information *** idea of high level Activity Streams along with its standardized format can play a vital role to solve this problem in the broader *** paper introduces a novel system called CoASGen (Consolidation and Activity Streams Generator) which is able to automatically generate high level Activity Streams after aggregating and consolidating from different independent systems (*** a software company context:version management system,wikis,bug trackers etc.).It retrieves life time information as heterogeneous web feed by sensing user activities from those independent systems and then it transforms several similar types of atomic activities into high level Activity Streams using semantic technologies along with its specific standardized ***,it shows these high level Activity Streams to the user interface which is able to automatically motivate users to find relevant information easily without either missing any data or losing valuable *** system solves the problem "data silos" by reducing and managing information in a structured way.
Enhanced Multivariance Product Representation (EMPR) method is used to represent multivariate functions in terms of less‐variate structures. The EMPR method extends the HDMR expansion by inserting some additional sup...
Enhanced Multivariance Product Representation (EMPR) method is used to represent multivariate functions in terms of less‐variate structures. The EMPR method extends the HDMR expansion by inserting some additional support functions to increase the quality of the approximants obtained for dominantly or purely multiplicative analytical structures. This work aims to develop the generalized form of the EMPR method to be used in multivariate data partitioning approaches. For this purpose, the Generalized HDMR philosophy is taken into consideration to construct the details of the Generalized EMPR at constancy level as the introductory steps and encouraging results are obtained in data partitioning problems by using our new method. In addition, to examine this performance, a number of numerical implementations with concluding remarks are given at the end of this paper.
An experimental investigation was conducted to examine the effect of a pulsed Nd:YAG laser energy deposition on the shock structures in supersonic/hypersonic flow and quiescent air. The effect of the laser energy and ...
An experimental investigation was conducted to examine the effect of a pulsed Nd:YAG laser energy deposition on the shock structures in supersonic/hypersonic flow and quiescent air. The effect of the laser energy and pressure in the blast wave generation were also investigated. As a result, the strength of plasma and blast wave becomes stronger as pressure or laser energy increase. And the breakdown threshold of air by laser energy deposition is 0.015 bar at 508 mJ laser energy, the blast wave threshold generation in air by laser energy deposition is 0.100 bar at same laser energy. As qualitative analysis, schlieren images are also obtained. After the series of experiments, the effect of laser energy deposition (LED) on high speed flow around the shock—shock interaction created by a wedge and blunt body. By LED, the structure of shock—shock interaction was collapsed momentary and the pressure of the stagnation point was fluctuated while interference of wave.
A multivariate modelling may involve a set of multivariate functions. A vector valued function structure can be used to mathematically express the given problem and each multivariate function can be considered as an e...
A multivariate modelling may involve a set of multivariate functions. A vector valued function structure can be used to mathematically express the given problem and each multivariate function can be considered as an element of this vector. This work aims to construct a new approach representing the elements of this vector structure in terms of less‐variate functions to reduce the computational complexity. For this purpose, a new method based on the plain High Dimensional Model Representation (HDMR) philosophy is developed. The basic concepts of this method and several illustrative numerical implementations are given here.
We establish a framework for assessing whether the transition state location of a biopolymer, which can be inferred from single molecule pulling experiments, corresponds to the ensemble of structures that have equal p...
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We establish a framework for assessing whether the transition state location of a biopolymer, which can be inferred from single molecule pulling experiments, corresponds to the ensemble of structures that have equal probability of reaching either the folded or unfolded states (Pfold=0.5). Using results for the forced unfolding of a RNA hairpin, an exactly soluble model, and an analytic theory, we show that Pfold is solely determined by s, an experimentally measurable molecular tensegrity parameter, which is a ratio of the tensile force and a compaction force that stabilizes the folded state. Applications to folding landscapes of DNA hairpins and a leucine zipper with two barriers provide a structural interpretation of single molecule experimental data. Our theory can be used to assess whether molecular extension is a good reaction coordinate using measured free energy profiles.
A numerical simulation program for Resin Transfer Molding (RTM) manufacturing process is developed using eXtended Finite Element Method (XFEM) combined with the level set method. The level set method is used to track ...
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A numerical simulation program for Resin Transfer Molding (RTM) manufacturing process is developed using eXtended Finite Element Method (XFEM) combined with the level set method. The level set method is used to track the resin flow front at each time step. XFEM allows to obtaining better accuracy of the resin pressure field in the flow front region than the classical FEM. The enriched shape functions of XFEM are derived by using the level set values of the front region. Finally, the level set values are calculated by an implicit characteristic Galerkin method. The numerical fill time is compared with the analytical solution to validate this program.
A model of phase-separation kinetics in systems exposed to energetic particle irradiation has been extended to include the effects of mobile dislocations. It is shown that when dislocations are allowed to participate ...
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A model of phase-separation kinetics in systems exposed to energetic particle irradiation has been extended to include the effects of mobile dislocations. It is shown that when dislocations are allowed to participate in the decomposition reaction, phase separation can occur at temperatures above the coherent spinodal, which is in agreement with several experiments on irradiated alloys. A linear stability analysis of the governing kinetic equations is performed and three regimes of microstructural evolution are identified within the parameter space of damage cascade size vs incident flux: complete phase separation, solid-solution behavior, and compositional patterning. In addition, numerical simulations of the evolving dislocation density and composition fields are performed. The numerical results provide the amplitude and wavelength of the stable patterns that can form under irradiation and elucidate the role of misfit dislocations in reducing the coherency strain due to atomic size mismatch.
Protein-RNA interactions play important roles in cellular processes like protein synthesis, RNA processing, and gene expression regulation. Reliable identification of the interfaces involved in RNA-protein interaction...
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