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2024 International Conference on High Performance Computing in Asia-Pacific Region Workshops, HPC Asia 2024 Workshops

作者： Liang, Wentao Fujita, Norihisa Kobayashi, Ryohei Boku, Taisuke Degree Program in Systems and Information Engineering University of Tsukuba Ibaraki Tsukuba Japan Center for Computational Sciences University of Tsukuba Ibaraki Tsukuba Japan

ISBN: (纸本)9798400716522

Intel oneAPI is a programming framework that accepts various accelerators such as GPUs, FPGAs, and multi-core CPUs, with a focus on HPC applications. Users can apply their code written in a single language, DPC++, to this heterogeneous programming environment. However, in practice, it is not easy to apply to different accelerators, especially for non-Intel devices such as NVIDIA and AMD GPUs. We have successfully constructed a oneAPI environment set to utilize the single DPC++ programming to handle true multi-hetero acceleration including NVIDIA GPU and Intel FPGA simultaneously. In this paper, we will show how this is done and what kind of applications can be targeted. © 2024 Copyright held by the owner/author(s).

关键词： Multiphysics

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A Player Position Tracking Method Based on a Wide-Area Pan-Tilt-Zoom Video 12

A Player Position Tracking Method Based on a Wide-Area Pan-T...

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Proceedings of the 12th International Conference on Sport sciences Research and Technology Support, icSPORTS 2024

作者： Yamagishi, Shunzo Xie, Chun Shishido, Hidehiko Kitahara, Itaru Master's and Doctoral Program in Intelligent Mechanical Interaction Systems University of Tsukuba Ibaraki Japan Center for Computational Sciences University of Tsukuba Ibaraki Japan Faculty of Science and Engineering Department of Information Systems Engineering Soka University Tokyo Japan

ISBN: (纸本)9789897587191

This paper proposes a method to estimate the posture of an athlete moving on a vast field in a sporting event using a pan-tilt-zoom camera. In order to estimate the posture of an athlete on a sports field from a dynamic video sequence, our method extracts image features to search correspondence points among successive frames and computes the homography transformation matrix that compensates for changes the camera parameters (e.g., angle of view and posture). The effectiveness of this method is qualitatively verified using MLB TV broadcast video. The accuracy and error factors are also quantitatively verified by CG simulation. Copyright © 2024 by SCITEPRESS - Science and Technology Publications, Lda.

关键词： Pan-Tilt-Zoom Camera Player Tracking Sports Analytics Video Processing Wide-Area

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Semi-analytical finite element method applied for characterizing micropolar fibrous composites

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Applied Mathematics and Mechanics(English Edition) 2024年第12期45卷 2147-2164页

作者： J.A.OTERO Y.ESPINOSA-ALMEYDA R.RODRIGUEZ-RAMOS J.MERODIO School of Engineering and Sciences Monterrey Institute of TechnologyEstado de Mexico 52926Mexico Institute of Engineering and Technology Autonomous University of Ciudad JuarezCiudad JuarezChihuahua 32310Mexico Postgraduate Program in Computational Modeling in Science and Technology Federal Fluminense UniversityRıo de Janeiro 27255-125Brazil Faculty of Mathematics and Computer Science University of HavanaLa Habana 10400Cuba Department of Mathematics Applied to ICT School of Informatics Systems EngineeringTechnical University of MadridMadrid 28031Spain

A semi-analytical finite element method(SAFEM),based on the two-scale asymptotic homogenization method(AHM)and the finite element method(FEM),is implemented to obtain the effective properties of two-phase fiber-reinforced composites(FRCs).The fibers are periodically distributed and unidirectionally aligned in a homogeneous *** framework addresses the static linear elastic micropolar problem through partial differential equations,subject to boundary conditions and perfect interface contact *** mathematical formulation of the local problems and the effective coefficients are presented by the *** local problems obtained from the AHM are solved by the FEM,which is denoted as the *** numerical results are provided,and the accuracy of the solutions is analyzed,indicating that the formulas and results obtained with the SAFEM may serve as the reference points for validating the outcomes of experimental and numerical computations.

关键词： semi-analytical approach fiber-reinforced composite(FRC) effective property finite element method(FEM) asymptotic homogenization method(AHM) micropolar elasticity

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Thermomechanical Characterization of Hot Surface Ignition Device Using Phenomenological Heat Flux Model

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JOURNAL OF PROPULSION AND POWER 2022年第4期38卷 656-670页

作者： Kang, Sang-Guk Ryu, Je Ir Motily, Austen H. Numkiatsakul, Prapassorn Lee, Tonghun Kriven, Waltraud M. Kim, Kenneth S. Kweon, Chol-Bum M. U.S. Army Research Laboratory Aberdeen Proving Ground MD 21005 Aerospace Engineer Weapons and Materials Research Directorate Postdoctoral Fellow Computational and Information Sciences Directorate University of Illinois at Urbana-Champaign Urbana IL 61801 Graduate Student Department of Mechanical Science and Engineering. Student Member AIAA Graduate Student Department of Materials Science and Engineering Professor Department of Mechanical Science and Engineering. Associate Fellow AIAA Professor Department of Materials Science and Engineering Mechanical Engineer Computational and Information Sciences Directorate. Member AIAA Program Manager Computational and Information Sciences Directorate. Member AIAA.

Modern aircraft compression ignition engines that seek to achieve fuel-flexible operation require ignition-assisting devices to perform reliably. Many military propulsion systems, and unmanned aircraft in particular, can use hot surface energy addition to improve engine performance. An analysis of the thermomechanical stress behavior of hot surface ignition devices is therefore critical to ensure that they can satisfy new operational requirements. In this paper, a phenomenological heat-flux model is proposed to simulate heat generation inside a heating element. Two finite element analysis models are established using the proposed heat-flux model in order to characterize the transient thermomechanical behavior of an ignition assistant: a two-dimensional (2-D) axisymmetric model with an equivalent cylindrical heating element and a three-dimensional (3-D) solid model with realistic heating element geometry. The transient behavior of the ignition assistant is investigated at standard conditions by characterizing the temperature and thermal stress inside the device for various input voltages. The effect of the nonaxisymmetric heating element geometry on the temperature and thermal stress distribution is assessed. Furthermore, the 3-D ignition assistant model is used to analyze the thermomechanical behavior of an ignition device subjected to a combustion event inside a rapid compression machine. Multiple circumferential orientations of the heating element plane relative to the spray axis are investigated. Results demonstrate that the observed maximum principal stress depends significantly on heating element orientation.

关键词： Heat Flux Stress Distribution Heat Generation Unmanned Aerial Vehicle Propulsion System Surface Energy Adaptive Mesh Refinement Fuel Injection CFD Simulation Fracture Toughness

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Implementation and Performance Evaluation of Collective Communications Using CIRCUS on Multiple FPGAs

Implementation and Performance Evaluation of Collective Comm...

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2023 International Conference on High Performance Computing in Asia-Pacific Region Workshops, HPC Asia 2023

作者： Kikuchi, Kohei Fujita, Norihisa Kobayashi, Ryohei Boku, Taisuke Master's Program in Computer Science Degree Programs in Systems and Information Engineering Graduate School of Science and Technology University of Tsukuba Tsukuba Japan Center for Computational Sciences University of Tsukuba Tsukuba Japan

ISBN: (纸本)9781450399890

In the high-performance computing domain, Field programmable Gate Array (FPGA) is a novel accelerator that exhibits high flexibility and performance characteristics distinct from other accelerators such as the Graphics Processing Unit (GPU). Recent advanced high-end FPGA is equipped with multiple channels of high speed optical link up to 100Gbps performance for each. This is a crucial feature when we construct PC clusters with FPGAs as accelerators, however it is not easy to utilize from user kernels because this feature is implemented in low level and simple direct communication between neighboring FPGAs. In order to provide the communication feature between FPGAs for accelerated PC clusters, we developed a communication system named CIRCUS which implies a user-friendly API from OpenCL and is equipped with routing function over multi-hop communication on multi-dimensional torus network of FPGAs. However, current CIRCUS only provides a point-to-point communication between source and destination FPGAs. In ordinary parallel processing environment such as MPI, the user program the message passing with various collective communication functions for parallel algorithm, for instance Allreduce, Allgather, etc. In this paper, we implement the collective communication function over CIRCUS for user-friendly programming of ordinary parallel algorithms on FPGAs. As the first target, we implement Allreduce function which is the most essential and important function. The paper describes the CIRCUS system briefly followed by the design, implementation and preliminary performance evaluation on Intel Stratix10 FPGAs. © 2023 ACM.

关键词： Field programmable gate arrays (FPGA)

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Observation of dark edge states in parity-time-symmetric quantum dynamics

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National Science Review 2023年第8期10卷 156-165页

作者： Peng Xue Xingze Qiu Kunkun Wang Barry C. Sanders Wei Yi Beijing Computational Science Research Center Key Laboratory of Quantum Information University of Science and Technology of China Chinese Academy of Sciences Synergetic Innovation Center in Quantum Information and Quantum Physics University of Science and Technology of China Chinese Academy of Sciences School of Physics and Optoelectronic Engineering Anhui University Shanghai Branch National Laboratory for Physical Sciences at MicroscaleUniversity of Science and Technology of China Institute for Quantum Science and Technology University of Calgary Program in Quantum Information Science Canadian Institute for Advanced Research

Topological edge states arise in non-Hermitian parity-time(PT)-symmetric systems, and manifest themselves as bright or dark edge states, depending on the imaginary components of their eigenenergies. As the spatial probabilities of dark edge states are suppressed during the non-unitary dynamics, it is a challenge to observe them experimentally. Here we report the experimental detection of dark edge states in photonic quantum walks with spontaneously broken PT symmetry, thus providing a complete description of the topological phenomena therein. We experimentally confirm that the global Berry phase in PT-symmetric quantum-walk dynamics unambiguously defines topological invariants of the system in both the PT-symmetry-unbroken and-broken regimes. Our results establish a unified framework for characterizing topology in PT-symmetric quantum-walk dynamics, and provide a useful method to observe topological phenomena in PT-symmetric non-Hermitian systems in general.

关键词： parity-time symmetry photonic quantum walks dark edge states topological invariants

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Deciphering DNA variant-associated aberrant splicing with the aid of RNA sequencing (vol 55, pg 732, 2023)

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NATURE GENETICS 2023年第7期55卷 1251-1251页

作者： Zhang, Bin Gao, Xin Computer Science Program Computer Electrical and Mathematical Sciences and Engineering Division King Abdullah University of Science and Technology (KAUST) Thuwal Saudi Arabia KAUST Computational Bioscience Research Center King Abdullah University of Science and Technology Thuwal Saudi Arabia

Aberrant RNA splicing events resulting from DNA variations are common causes of genetic disorders. Two studies published in Nature Genetics independently describe methods to decipher DNA-variant-associated aberrant sp... 详细信息

关键词： Data mining High-throughput screening

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Landscape analysis of environmental data sources for linkage with SEER cancer patients database

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Journal of the National Cancer Institute - Monographs 2024年第65期2024卷 132-144页

作者： Tatalovich, Zaria Chtourou, Amina Zhu, Li Dellavalle, Curt Hanson, Heidi A. Henry, Kevin A. Penberthy, Lynne Surveillance Research Program Division of Cancer Control and Population Sciences National Cancer Institute Rockville MD United States Computational Sciences and Engineering Division Oak Ridge National Laboratory US Department of Energy Oakridge TN United States Temple University Philadelphia PA United States Cancer Prevention and Control Fox Chase Cancer Center Philadelphia PA United States

One of the challenges associated with understanding environmental impacts on cancer risk and outcomes is estimating potential exposures of individuals diagnosed with cancer to adverse environmental conditions over the life course. Historically, this has been partly due to the lack of reliable measures of cancer patients' potential environmental exposures before a cancer diagnosis. The emerging sources of cancer-related spatiotemporal environmental data and residential history information, coupled with novel technologies for data extraction and linkage, present an opportunity to integrate these data into the existing cancer surveillance data infrastructure, thereby facilitating more comprehensive assessment of cancer risk and outcomes. In this paper, we performed a landscape analysis of the available environmental data sources that could be linked to historical residential address information of cancer patients' records collected by the National Cancer Institute's Surveillance, Epidemiology, and End Results program. The objective is to enable researchers to use these data to assess potential exposures at the time of cancer initiation through the time of diagnosis and even after diagnosis. The paper addresses the challenges associated with data collection and completeness at various spatial and temporal scales, as well as opportunities and directions for future research. © 2024 The Author(s). Published by Oxford University Press. All rights reserved.

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Using SYCLomatic to Migrate CUDA Code to oneAPI Adapting NVIDIA GPU

Using SYCLomatic to Migrate CUDA Code to oneAPI Adapting NVI...

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IEEE International Conference on Cluster Computing Workshops and Posters (CLUSTER WORKSHOPS)

作者： Wentao Liang Norihisa Fujita Ryohei Kobayashi Taisuke Boku Master's Program in Computer Science Degree Program in Systems and Information Engineering Graduate School of Science and Technology University of Tsukuba Center for Computational Sciences University of Tsukuba

ISBN: (数字)9798350383454

ISBN: (纸本)9798350383461

Nowadays, the use of accelerators in high performance computing has become more common than ever before. The most used accelerators must be the Graphics Processing Unit (GPU). It has emerged as an important component in most of the parallel computing scenarios, surpassing the capabilities of the traditional Central Processing Unit (CPU) in perspective of both performance and energy efficiency.

关键词： Codes Conferences High performance computing Graphics processing units Cluster computing Parallel processing Energy efficiency Central Processing Unit

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High Resolution of City-Level Climate Simulation by GPU with Multi-physical Phenomena 18th

High Resolution of City-Level Climate Simulation by GPU with...

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18th IFIP WG 10.3 International Conference on Network and Parallel Computing, NPC 2021

作者： Watanabe, Koei Kikuchi, Kohei Boku, Taisuke Sato, Takuto Kusaka, Hiroyuki Master’s Program in Computer Science Graduate School of Systems and Information Engineering University of Tsukuba Tsukubashi Japan Center for Computational Sciences University of Tsukuba Tsukubashi Tennodi Japan

ISBN: (纸本)9783030935702

In this paper, we describe the Graphics Processing Unit (GPU) implementation of our City-LES code on detailed large eddy simulations, including the multi-physical phenomena on fluid dynamics, heat absorption and reflection by surface and building materials, cloud effects, and even sunlight effect. Because a detailed simulation involving these phenomena is required for analyses at the street level and several meters of resolution, the computation amount is enormous, and ordinary CPU computation cannot provide sufficient performance. Therefore, we implemented the entire code on GPU clusters with large-scale computing. We applied OpenACC coding to incrementally implement relatively easy programming and eliminate data transfers between the CPU and GPU memories. Based on this research, we determined that the elimination of data transfers is effective, even in the case where a part of the code execution on the GPU is slower than the CPU, owing to the absence of spatial parallelism. The objective of this study is to perform a complete climate simulation on a few square-kilometers field around the Tokyo Station, considering the finest resolution of the original highlighted area of the Marathon race in the Olympic Games Tokyo 2020. We successfully transferred the entire code to the GPU to provide approximately eight times the performance of CPU-only computation on multi-GPU per node with a large scale cluster. © 2022, IFIP International Federation for Information Processing.

关键词： Graphics processing unit

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