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A Randomized Controlled Crossover Trial to Evaluate the Efficacy of AI-Assisted Heart Contouring

International Journal of Radiation Oncology, Biology, Physics 2024年第2期120卷 S41-S41页

作者： Bitterman, D.S. Guthier, C.V. Shin, K.Y. Zeleznik, R. Doyle, P. Guevara, M. Kang, H. Dillon-Martin, M. Perkins, T. Orlina, L.T. Pei, Y. Bredfeldt, J.S. Catalano, P.J. Bellon, J.R. Punglia, R.S. Warren, L. Wong, J.S. Kozono, D.E. Mak, R.H. Department of Radiation Oncology Dana-Farber Cancer Institute/Brigham and Women’s Hospital Harvard Medical School Boston MA Department of Data Science Dana-Farber Cancer Institute Boston MA Artificial Intelligence in Medicine (AIM) Program at Harvard Boston MA Brigham and Women’s Hospital/Dana-Farber Boston MA United States Department of Radiation Oncology Brigham and Women’s Hospital/Dana-Farber Cancer Institute Boston MA Boston University Chobanian & Avedisian School of Medicine Boston MA Brigham and Women’s Hospital/Dana-Farber Boston MA Brigham and Women’s Hospital Boston MA Department of Radiation Oncology Dana-Farber Cancer Institute/Brigham and Women’s Hospital Boston MA Department of Biostatistics and Computational Biology Dana-Farber Cancer Institute Harvard Medical School Boston MA Dana-Farber/Brigham and Women’s Cancer Center Boston MA Department of Radiation Oncology Dana-Farber Cancer Institute Boston MA

Purpose/Objective(s)Artificial intelligence (AI) normal tissue contouring tools are now widely available and used in many treatment planning systems. However, few studies have prospectively demonstrated the value of s...

Purpose/Objective(s)Artificial intelligence (AI) normal tissue contouring tools are now widely available and used in many treatment planning systems. However, few studies have prospectively demonstrated the value of such tools when employed in clinical workflows. We conducted a randomized controlled trial to assess the benefit of using an AI heart contouring algorithm to assist breast radiotherapy (RT) planning. Materials/MethodsA single institution, 2-arm randomized controlled crossover trial was undertaken between December 2021 and October 2023. A convolutional neural network for heart auto-contouring, which had median Dice 0.95 compared to gold standard contours and reduced contouring time by 50% in pre-clinical studies, was implemented as a scripted tool within a treatment planning system. Eligible patients had breast cancer planned for RT, with hearts contoured according to the randomization of the dosimetrist assigned to their plan. Dosimetrists were stratified by experience and randomized to (1) manual heart contouring first or (2) AI-assisted heart contouring first. AI-assisted contouring consisted of running the model within the treatment planning system and editing the contour as needed. After completing 5 cases on the initial contour strategy, dosimetrists crossed to the other strategy. Co-primary outcomes were feasibility and efficacy, defined as heart contouring time (measured by recording screen during contouring). Secondary endpoints included dosimetrist and treating physician contour assessments. The trial had 90% power to detect a 30% reduction in contour time with 2-sided type I error of 5%. ResultsOne hundred eighteen patients enrolled; 60 patients’ hearts were contoured manually and 58 with AI assistance. Eleven dosimetrists enrolled; 5 were randomized to manual first arm and 6 to AI-assisted first arm. There was no difference in manual vs. AI-assisted contour time overall (mean 277.3 ± 151.2 vs. 267.2 ± 199.0 seconds, P = 0.76), on the manual fi

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Patterns of somatic structural variation in human cancer genomes (vol 578, pg 112, 2020)

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NATURE 2023年第7948期614卷 E38-E38页

作者： Li, Yilong Roberts, Nicola D. Wala, Jeremiah A. Shapira, Ofer Schumacher, Steven E. Kumar, Kiran Khurana, Ekta Waszak, Sebastian Korbel, Jan O. Haber, James E. Imielinski, Marcin Weischenfeldt, Joachim Beroukhim, Rameen Campbell, Peter J. Cancer Genome Project Wellcome Trust Sanger Institute Hinxton UK Totient Inc Cambridge MA USA Wellcome Sanger Institute Wellcome Genome Campus Hinxton UK Department of Haematology University of Cambridge Cambridge UK Cambridge University Hospitals NHS Foundation Trust Cambridge UK Korea Advanced Institute of Science and Technology Daejeon South Korea Department of Zoology Genetics and Physical Anthropology University of Santiago de Compostela Santiago de Compostela Spain Centre for Research in Molecular Medicine and Chronic Diseases (CIMUS) University of Santiago de Compostela Santiago de Compostela Spain The Biomedical Research Centre (CINBIO) University of Vigo Vigo Spain Centre for Research in Molecular Medicine and Chronic Diseases (CiMUS) Universidade de Santiago de Compostela Santiago de Compostela Spain Department of Zoology Genetics and Physical Anthropology (CiMUS) Universidade de Santiago de Compostela Santiago de Compostela Spain The Biomedical Research Centre (CINBIO) Universidade de Vigo Vigo Spain The Broad Institute of Harvard and MIT Cambridge MA USA Bioinformatics and Integrative Genomics Harvard University Cambridge MA USA Department of Cancer Biology Dana-Farber Cancer Institute Boston MA USA Broad Institute of MIT and Harvard Cambridge MA USA Department of Medical Oncology Dana-Farber Cancer Institute Boston MA USA Harvard Medical School Boston MA USA Massachusetts General Hospital Center for Cancer Research Charlestown MA USA Dana-Farber Cancer Institute Boston MA USA Department of Biostatistics and Computational Biology Dana-Farber Cancer Institute and Harvard Medical School Boston MA USA Weill Cornell Medical College New York NY USA Department of Physiology and Biophysics Weill Cornell Medicine New York NY USA Institute for Computational Biomedicine Weill Cornell Medicine New York NY USA Controlled Department and Institution New York NY USA Englander Institute for Precision Medicine Weill Cornell Medicine Ne

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The repertoire of mutational signatures in human cancer (vol 578, pg 94, 2020)

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NATURE 2023年第7948期614卷 E41-E41页

作者： Alexandrov, Ludmil B. Kim, Jaegil Haradhvala, Nicholas J. Huang, Mi Ni Ng, Alvin Wei Tian Wu, Yang Boot, Arnoud Covington, Kyle R. Gordenin, Dmitry A. Bergstrom, Erik N. Islam, S. M. Ashiqul Lopez-Bigas, Nuria Klimczak, Leszek J. McPherson, John R. Morganella, Sandro Sabarinathan, Radhakrishnan Wheeler, David A. Mustonen, Ville Getz, Gad Rozen, Steven G. Stratton, Michael R. Department of Cellular and Molecular Medicine Department of Bioengineering Moores Cancer Center University of California San Diego CA USA Wellcome Sanger Institute Wellcome Genome Campus Hinxton UK Department of Cellular and Molecular Medicine and Department of Bioengineering University of California San Diego La Jolla CA USA UC San Diego Moores Cancer Center San Diego CA USA University of California San Diego San Diego CA USA Broad Institute of MIT and Harvard Cambridge MA USA Center for Cancer Research Massachusetts General Hospital Boston MA USA Massachusetts General Hospital Boston MA USA Department of Pathology Massachusetts General Hospital Boston MA USA Harvard Medical School Boston MA USA Laboratory for Medical Science Mathematics RIKEN Center for Integrative Medical Sciences Yokohama Japan Computational Biology Program Ontario Institute for Cancer Research Toronto ON Canada Programme in Cancer & Stem Cell Biology Duke-NUS Medical School Singapore Singapore Centre for Computational Biology Duke-NUS Medical School Singapore Singapore Programme in Cancer and Stem Cell Biology Duke-NUS Medical School Singapore Singapore Programme in Cancer and Stem Cell Biology Centre for Computational Biology Duke-NUS Medical School Singapore Singapore SingHealth Duke-NUS Institute of Precision Medicine National Heart Centre Singapore Singapore Singapore Cancer Science Institute of Singapore National University of Singapore Singapore Singapore Institute of Molecular and Cell Biology Singapore Singapore Laboratory of Cancer Epigenome Division of Medical Science National Cancer Centre Singapore Singapore Singapore Duke-NUS Medical School Singapore Singapore Human Genome Sequencing Center Baylor College of Medicine Houston TX USA Dan L. Duncan Cancer Center Baylor College of Medicine Houston TX USA Department of Molecular and Human Genetics Baylor College of Medicine Houston TX USA Genome Integrity and Structural Biology Laboratory National Ins

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The evolutionary history of 2,658 cancers (vol 578, pg 122, 2020)

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NATURE 2023年第7948期614卷 E42-E42页

作者： Gerstung, Moritz Jolly, Clemency Leshchiner, Ignaty Dentro, Stefan C. Gonzalez, Santiago Rosebrock, Daniel Mitchell, Thomas J. Rubanova, Yulia Anur, Pavana Yu, Kaixian Tarabichi, Maxime Deshwar, Amit Wintersinger, Jeff Kleinheinz, Kortine Vazquez-Garcia, Ignacio Haase, Kerstin Jerman, Lara Sengupta, Subhajit Macintyre, Geoff Malikic, Salem Donmez, Nilgun Livitz, Dimitri G. Cmero, Marek Demeulemeester, Jonas Schumacher, Steven Fan, Yu Yao, Xiaotong Lee, Juhee Schlesner, Matthias Boutros, Paul C. Bowtell, David D. Zhu, Hongtu Getz, Gad Imielinski, Marcin Beroukhim, Rameen Sahinalp, S. Cenk Ji, Yuan Peifer, Martin Markowetz, Florian Mustonen, Ville Yuan, Ke Wang, Wenyi Morris, Quaid D. Spellman, Paul T. Wedge, David C. Van Loo, Peter European Molecular Biology Laboratory European Bioinformatics Institute (EMBL-EBI) Cambridge UK European Molecular Biology Laboratory Genome Biology Unit Heidelberg Germany Wellcome Sanger Institute Cambridge UK Genome Biology Unit European Molecular Biology Laboratory (EMBL) Heidelberg Germany University of Ljubljana Ljubljana Slovenia The Francis Crick Institute London UK Big Data Institute University of Oxford Oxford UK Wellcome Sanger Institute Wellcome Genome Campus Hinxton UK Big Data Institute Li Ka Shing Centre University of Oxford Oxford UK University of Cambridge Cambridge UK Cambridge University Hospitals NHS Foundation Trust Cambridge UK Department of Applied Mathematics and Theoretical Physics Centre for Mathematical Sciences University of Cambridge Cambridge UK Department of Epidemiology and Biostatistics Memorial Sloan Kettering Cancer Center New York NY USA Department of Statistics Columbia University New York NY USA Department of Haematology University of Cambridge Cambridge UK University of Leuven Leuven Belgium Broad Institute of MIT and Harvard Cambridge MA USA Center for Cancer Research Massachusetts General Hospital Charlestown MA USA Department of Pathology Massachusetts General Hospital Boston MA USA Harvard Medical School Boston MA USA Center for Cancer Research Massachusetts General Hospital Boston MA USA Dana-Farber Cancer Institute Boston MA USA Department of Medical Oncology Dana-Farber Cancer Institute Boston MA USA Department of Cancer Biology Dana-Farber Cancer Institute Boston MA USA Oxford NIHR Biomedical Research Centre Oxford UK Oxford NIHR Biomedical Research Centre University of Oxford Oxford UK University of Toronto Toronto Ontario Canada Vector Institute Toronto Ontario Canada Vector Institute Toronto ON Canada Department of Computer Science University of Toronto Toronto ON Canada Ontario Institute for Cancer Research Toronto Ontario Canada University of California Los Angeles

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Genomic basis for RNA alterations in cancer (vol 578, pg 129, 2020)

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NATURE 2023年第7948期614卷 E37-E37页

作者： Calabrese, Claudia Davidson, Natalie R. Demircioglu, Deniz Fonseca, Nuno A. He, Yao Lehmann, Kjong-Van Liu, Fenglin Shiraishi, Yuichi Soulette, Cameron M. Urban, Lara Greger, Liliana Li, Siliang Liu, Dongbing Perry, Marc D. Xiang, Qian Zhang, Fan Zhang, Junjun Bailey, Peter Erkek, Serap Hoadley, Katherine A. Hou, Yong Huska, Matthew R. Kilpinen, Helena Korbel, Jan O. Marin, Maximillian G. Markowski, Julia Nandi, Tannistha Pan-Hammarstrom, Qiang Pedamallu, Chandra Sekhar Siebert, Reiner Stark, Stefan G. Su, Hong Tan, Patrick Waszak, Sebastian M. Yung, Christina Zhu, Shida Awadalla, Philip Creighton, Chad J. Meyerson, Matthew Ouellette, B. F. Francis Wu, Kui Yang, Huanming Brazma, Alvis Brooks, Angela N. Goke, Jonathan Ratsch, Gunnar Schwarz, Roland F. Stegle, Oliver Zhang, Zemin European Molecular Biology Laboratory European Bioinformatics Institute Hinxton UK European Molecular Biology Laboratory European Bioinformatics Institute (EMBL-EBI) Cambridge UK Genome Biology Unit European Molecular Biology Laboratory (EMBL) Heidelberg Germany CIBIO/InBIO - Research Center in Biodiversity and Genetic Resources Universidade do Porto Vairão Portugal Berlin Institute for Medical Systems Biology Max Delbruck Center for Molecular Medicine Berlin Germany German Cancer Consortium (DKTK) partner site Berlin Germany German Cancer Research Center (DKFZ) Heidelberg Germany Berlin Institute for Medical Systems Biology Max Delbrück Center for Molecular Medicine Berlin Germany German Cancer Consortium (DKTK) Partner site Berlin Berlin Germany European Molecular Biology Laboratory Genome Biology Unit Heidelberg Germany Division of Computational Genomics and Systems Genetics German Cancer Research Center (DKFZ) Heidelberg Germany ETH Zurich Zurich Switzerland Memorial Sloan Kettering Cancer Center New York NY USA Weill Cornell Medical College New York NY USA SIB Swiss Institute of Bioinformatics Lausanne Switzerland University Hospital Zurich Zurich Switzerland Computational Biology Center Memorial Sloan Kettering Cancer Center New York NY USA Department of Biology ETH Zurich Zürich Switzerland Department of Computer Science ETH Zurich Zurich Switzerland Korea University Seoul South Korea Computational and Systems Biology Program Memorial Sloan Kettering Cancer Center New York NY USA Department of Physiology and Biophysics Weill Cornell Medicine New York NY USA Institute for Computational Biomedicine Weill Cornell Medicine New York NY USA Controlled Department and Institution New York NY USA Englander Institute for Precision Medicine Weill Cornell Medicine New York NY USA National University of Singapore Singapore Singapore Genome Institute of Singapore Singapore Singapore Computational and Systems Biology Genome Institute of Singap

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Publisher Correction: Reference component analysis of single-cell transcriptomes elucidates cellular heterogeneity in human colorectal tumors

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Nature genetics 2023年第1期55卷 166页

作者： Huipeng Li Elise T Courtois Debarka Sengupta Yuliana Tan Kok Hao Chen Jolene Jie Lin Goh Say Li Kong Clarinda Chua Lim Kiat Hon Wah Siew Tan Mark Wong Paul Jongjoon Choi Lawrence J K Wee Axel M Hillmer Iain Beehuat Tan Paul Robson Shyam Prabhakar Computational and Systems Biology Genome Institute of Singapore Singapore Singapore. Developmental Cellomics Laboratory Genome Institute of Singapore Singapore Singapore. Department of Computer Science and Engineering and Center for Computational Biology Indraprastha Institute of Information Technology Delhi India. Synthetic Biology Genome Institute of Singapore Singapore Singapore. Cancer Therapeutics and Stratified Oncology Genome Institute of Singapore Singapore Singapore. Department of Medical Oncology National Cancer Centre Singapore Singapore Singapore. Department of Pathology Singapore General Hospital Singapore Singapore. Department of Colorectal Surgery Singapore General Hospital Singapore Singapore. Data Analytics Department Institute for Infocomm Research Singapore Singapore. Cancer Therapeutics and Stratified Oncology Genome Institute of Singapore Singapore Singapore. iain.tan.b.h@singhealth.com.sg. Department of Medical Oncology National Cancer Centre Singapore Singapore Singapore. iain.tan.b.h@singhealth.com.sg. Program in Cancer and Stem Cell Biology Duke-NUS Medical School Singapore Singapore. iain.tan.b.h@singhealth.com.sg. Developmental Cellomics Laboratory Genome Institute of Singapore Singapore Singapore. paul.robson@***. The Jackson Laboratory for Genomic Medicine Farmington Connecticut USA. paul.robson@***. Department of Genetics and Genome Sciences Institute for Systems Genomics University of Connecticut Farmington Connecticut USA. paul.robson@***. Department of Biological Sciences National University of Singapore Singapore Singapore. paul.robson@***. Computational and Systems Biology Genome Institute of Singapore Singapore Singapore. prabhakars@gis.a-star.edu.sg.

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SciPy 1.0—Fundamental algorithms for scientific computing in python

arXiv

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arXiv 2019年

作者： Virtanen, Pauli Gommers, Ralf Oliphant, Travis E. Haberland, Matt Reddy, Tyler Cournapeau, David Burovski, Evgeni Peterson, Pearu Weckesser, Warren Bright, Jonathan van der Walt, Stéfan J. Brett, Matthew Wilson, Joshua Millman, K. Jarrod Mayorov, Nikolay Nelson, Andrew R.J. Jones, Eric Kern, Robert Larson, Eric Carey, C.J. Polat, Ilhan Feng, Yu Moore, Eric W. VanderPlas, Jake Laxalde, Denis Perktold, Josef Cimrman, Robert Henriksen, Ian Quintero, E.A. Harris, Charles R. Archibald, Anne M. Ribeiro, Antônio H. Pedregosa, Fabian van Mulbregt, Paul University of Jyväskylä University of Jyväskylä FI-40014 Finland Quansight LLC AustinTX United States Ultrasound Imaging Mayo Clinic RochesterMN55902 United States Electrical Engineering Brigham Young University ProvoUT84604 United States Enthought Inc. AustinTX78701 United States Anaconda Inc AustinTX78701 United States BioResource and Agricultural Engineering Department California Polytechnic State University San Luis ObispoCA93407 United States Department of Mathematics University of California Los AngelesCA90025 United States Los Alamos National Laboratory Los AlamosNM87544 United States Independent Researcher Higher School of Economics Myasnitskaya 20 Moscow101000 Russia Independent Researcher Saue Estonia Department of Mechanics and Applied Mathematics Institute of Cybernetics Tallinn Technical University Akadeemia Rd 21 Tallinn Estonia Independent Researcher NY United States Berkeley Institute for Data Science University of California BerkeleyCA94720 United States School of Psychology University of Birmingham Edgbaston BirmighamB15 2TT United Kingdom Division of Biostatistics University of California BerkeleyCA94720 United States WayRay LLC Skolkovo Innovation Center Moscow143026 Russia Australian Nuclear Science and Technology Organisation Locked Bag 2001 Kirrawee DCNSW2232 Australia Institute for Learning and Brain Sciences University of Washington SeattleWA98195 United States College of Information and Computing Sciences University of Massachusetts Amherst AmherstMA01002 United States Berkeley Center for Cosmological Physics University of California BerkeleyCA94720 United States Bruker Biospin Corp. 15 Fortune Drive BillericaMA01821 United States University of Washington SeattleWA98195 United States New Technologies - Research Centre University of West Bohemia Univerzitní 8 Plzeň306 14 Czech Republic Oden Institute for Computational Engineering and Sciences University of Texas at Austin AustinTX7

SciPy is an open source scientific computing library for the Python programming language. SciPy 1.0 was released in late 2017, about 16 years after the original version 0.1 release. SciPy has become a de facto standar... 详细信息

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159P Spatial organization of B cells in the prediction and prognosis of gastric cancer

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Annals of Oncology 2024年 35卷 S1467-S1467页

作者： R. Tay M. Sachdeva Y.W. Kim M-C. Kook H. Kim J-H. Cheong G. Schmidt T. Yoshikawa T. Oshima H. Ma T. Sheng P. Tan H.I. Grabsch R. Sundar Yong Loo Lin School of Medicine NUS - National University of Singapore Singapore Medical Oncology Department NCIS - National University Cancer Institute Singapore Singapore Department of Cancer Policy and Population Health NCC - National Cancer Center Goyang Republic of Korea Department of Pathology NCC - National Cancer Center Goyang Republic of Korea Department of Pathology Severance Hospital - Yonsei University College of Medicine Seoul Republic of Korea Department of Surgery Yonsei University Seoul Republic of Korea Image Data Sciences AstraZeneca Computational Pathology GmbH Munich Germany Gastric Surgery National Cancer Center Hospital Tokyo Japan Department of Gastrointestinal Surgery Kanagawa Cancer Center Yokohama Japan Cancer and Stem Cell Biology Program Duke-NUS Graduate Medical School Singapore Genome Institute of Singapore A*STAR - Agency for Science Technology and Research Singapore Programme in Cancer & Stem Cell Biology Duke-NUS Graduate Medical School Singapore Pathology Maastricht University Medical Center (MUMC) Maastricht Netherlands Haematology-Oncology NUHS - National University Health System Singapore

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Author Correction: Genomic footprints of activated telomere maintenance mechanisms in cancer (Dec, 10.1038/s41467-019-13824-9, 2022)

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NATURE COMMUNICATIONS 2022年第1期13卷 1-1页

作者： Sieverling, Lina Hong, Chen Koser, Sandra D. Ginsbach, Philip Kleinheinz, Kortine Hutter, Barbara Braun, Delia M. Cortes-Ciriano, Isidro Xi, Ruibin Kabbe, Rolf Park, Peter J. Eils, Roland Schlesner, Matthias Brors, Benedikt Rippe, Karsten Jones, David T. W. Feuerbach, Lars Division of Applied Bioinformatics German Cancer Research Center (DKFZ) 69120 Heidelberg Germany Faculty of Biosciences Heidelberg University 69120 Heidelberg Germany Division of Applied Bioinformatics German Cancer Research Center (DKFZ) Heidelberg Germany Faculty of Biosciences Heidelberg University Heidelberg Germany Division of Theoretical Bioinformatics German Cancer Research Center (DKFZ) 69120 Heidelberg Germany Department for Bioinformatics and Functional Genomics Institute for Pharmacy and Molecular Biotechnology (IPMB) and BioQuant 69120 Heidelberg Germany Division of Theoretical Bioinformatics German Cancer Research Center (DKFZ) Heidelberg Germany Institute of Pharmacy and Molecular Biotechnology and BioQuant Heidelberg University Heidelberg Germany German Cancer Consortium (DKTK) Heidelberg Germany National Center for Tumor Diseases (NCT) Heidelberg Heidelberg Germany Heidelberg Center for Personalized Oncology (DKFZ-HIPO) German Cancer Research Center (DKFZ) Heidelberg Germany German Cancer Consortium (DKTK) German Cancer Research Center (DKFZ) Heidelberg Germany Division of Chromatin Networks German Cancer Research Center (DKFZ) and BioQuant 69120 Heidelberg Germany Department of Biomedical Informatics Harvard Medical School Boston Massachusetts 02115 USA Department of Chemistry Centre for Molecular Science Informatics University of Cambridge Cambridge CB2 1EW UK Ludwig Center at Harvard Medical School Boston Massachusetts 02115 USA Department of Biomedical Informatics Harvard Medical School Boston MA USA Department of Chemistry Centre for Molecular Science Informatics University of Cambridge Cambridge UK Ludwig Center at Harvard Medical School Boston MA USA School of Mathematical Sciences and Center for Statistical Science Peking University Beijing 100871 China Heidelberg University Heidelberg Germany New BIH Digital Health Center Berlin Institute of Health (BIH) and Charité - Universitätsmedizin Berlin Berlin Germany Bioi

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Author Correction: Experimental and real-world evidence supporting the computational repurposing of bumetanide for APOE4-related Alzheimer's disease

Nature aging

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Nature aging 2021年第12期1卷 1202页

作者： Alice Taubes Phil Nova Kelly A Zalocusky Idit Kosti Mesude Bicak Misha Y Zilberter Yanxia Hao Seo Yeon Yoon Tomiko Oskotsky Silvia Pineda Bin Chen Emily A Aery Jones Krishna Choudhary Brian Grone Maureen E Balestra Fayzan Chaudhry Ishan Paranjpe Jessica De Freitas Nicole Koutsodendris Nuo Chen Celine Wang William Chang Alice An Benjamin S Glicksberg Marina Sirota Yadong Huang Gladstone Institute of Neurological Disease Gladstone Institutes San Francisco CA USA. Biomedical Sciences Graduate Program University of California San Francisco CA USA. Gladstone Center for Translational Advancement Gladstone Institutes San Francisco CA USA. Department of Neurology University of California San Francisco CA USA. Bakar Computational Health Sciences Institute University of California San Francisco CA USA. Department of Pediatrics University of California San Francisco CA USA. Hasso Plattner Institute for Digital Health at Mount Sinai Icahn School of Medicine at Mount Sinai New York NY USA. Department of Genetics and Genomic Sciences Icahn School of Medicine at Mount Sinai New York NY USA. Department of Surgery University of California San Francisco CA USA. Gladstone Institute of Data Science and Biotechnology Gladstone Institutes San Francisco CA USA. Development and Stem Cell Biology Graduate Program University of California San Francisco CA USA. Bakar Computational Health Sciences Institute University of California San Francisco CA USA. marina.sirota@ucsf.edu. Department of Pediatrics University of California San Francisco CA USA. marina.sirota@ucsf.edu. Gladstone Institute of Neurological Disease Gladstone Institutes San Francisco CA USA. yadong.huang@gladstone.ucsf.edu. Biomedical Sciences Graduate Program University of California San Francisco CA USA. yadong.huang@gladstone.ucsf.edu. Gladstone Center for Translational Advancement Gladstone Institutes San Francisco CA USA. yadong.huang@gladstone.ucsf.edu. Department of Neurology University of California San Francisco CA USA. yadong.huang@gladstone.ucsf.edu. Department of Pathology University of California San Francisco CA USA. yadong.huang@gladstone.ucsf.edu.

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