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IEEE International Symposium on Geoscience and Remote Sensing (IGARSS)

作者： Shahryar Fazli Wenzhao Li Surendra Maharjan Hesham El Askary Computational and Data Sciences Graduate Program Schmid College of Science and Technology Chapman University Orange CA USA Earth Systems Science and Data Solutions Lab Chapman University Orange CA USA Department of Environmental Sciences Faculty of Science Alexandria University Alexandria Egypt

ISBN: (数字)9798350360325

ISBN: (纸本)9798350360332

In California's Central Valley, water management and crop health, particularly in rice cultivation, are critical. This paper details the application of Earth surface Mineral dust source InvesTigation (EMIT) hyperspectral imaging, specifically employing Spectral Correlation Mapper (SCM) and Spectral Information Divergence (SID), for precise phenological analysis. By aligning EMIT data with Hyperion satellite references, we address spectral and geographical discrepancies. Our methodology includes seasonal sampling of spectral curves to capture the phenological stages of rice. Results show a strong correlation (R 2 = 0.86) between August EMIT and Reference dataset, emphasizing EMIT's utility in enhancing agricultural practices and water efficiency in the region, and highlighting the importance of understanding rice phenology for sustainable farming.

关键词： Earth Correlation Satellites Accuracy Uncertainty Phenology Minerals

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Identify Non-mutational p53 Functional Deficiency in Human Cancers

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Genomics, Proteomics & Bioinformatics 2024年第5期22卷 85-98页

作者： Qianpeng Li Yang Zhang Sicheng Luo Zhang Zhang Ann L.Oberg David E.Kozono Hua Lu Jann N.Sarkaria Lina Ma Liguo Wang National Genomics Data Center China National Center for BioinformationBeijing 100101China Beijing Institute of Genomics Chinese Academy of SciencesBeijing 100101China University of Chinese Academy of Sciences Beijing 100049China Division of Computational Biology Mayo Clinic College of Medicine and ScienceRochesterMN 55905USA Department of Radiation Oncology Dana-Farber Cancer Institute and Brigham and Women's HospitalBostonMA 02215USA Department of Biochemistry&Molecular Biology and Tulane Cancer Center Tulane University School of MedicineNew OrleansLA 70112USA Department of Radiation Oncology Mayo Clinic College of Medicine and ScienceRochesterMN 55905USA Department of Biochemistry and Molecular Biology Mayo Clinic College of Medicine and ScienceRochesterMN 55905USA Bioinformatics and Computational Biology Graduate Program University of Minnesota RochesterRochesterMN 55904USA

An accurate assessment of p53's functional statuses is critical for cancer genomic ***,there is a significant challenge in identifying tumors with non-mutational p53 inactivation which is not detectable through DNA *** undetected cases are often misclassified as p53-normal,leading to inaccurate prognosis and downstream association *** address this issue,we built the support vector machine(SVM)models to systematically reassess p53's functional statuses in TP53 wild-type(TP53^(WT))tumors from multiple The Cancer Genome Atlas(TCGA)***-validation demonstrated the good performance of the SVM models with a mean area under the receiver operating characteristic curve(AUROC)of 0.9822,precision of 0.9747,and recall of *** study revealed that a significant proportion(87%-99%)of TP53^(WT) tumors actually had compromised p53 *** analyses uncovered that these genetically intact but functionally impaired(termed as predictively reduced function of p53 or TP53^(WT)-pRF)tumors exhibited genomic and pathophysiologic features akin to TP53-mutant tumors:heightened genomic instability and elevated levels of ***,patients with TP53^(WT)-pRF tumors experienced significantly shortened overall survival or progression-free survival compared to those with predictively normal function of p53(TP53^(WT)-pN)tumors,and these patients also displayed increased sensitivity to platinum-based chemotherapy and radiation therapy.

关键词： Cancer Composite expression DNA mutation Machine learning p53 deficiency

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Deciphering Water Quality and Algal Dynamics in Clear Lake Through Hyperspectral Analysis Using Emit data

Deciphering Water Quality and Algal Dynamics in Clear Lake T...

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IEEE International Symposium on Geoscience and Remote Sensing (IGARSS)

作者： Wenzhao Li Shahryar Fazli Surendra Maharjan Hesham El-Askary Earth Systems Science and Data Solutions Lab Schmid College of Science and Technology Chapman University Orange CA USA Computational and Data Sciences Graduate Program Schmid College of Science and Technology Chapman University Orange CA USA Department of Environmental Sciences Faculty of Science Alexandria University Alexandria Egypt

ISBN: (数字)9798350360325

ISBN: (纸本)9798350360332

This study evaluates the potential application of hyperspectral Earth Surface Mineral Dust Source Investigation (EMIT) remote sensing for monitoring harmful algal blooms (HABs) and water quality in Clear Lake, California. The research focuses on correlating the chlorophyll-a (Chl-a) concentrations with EMIT spectral signatures, using waterbody-wide statistical analysis of Chl-a and EMIT data sampling at various lake locations. Results demonstrate distinct spectral signatures associated with varying Chl-a levels, highlighting the potential of hyperspectral imaging in differentiating algae levels and assessing water quality variables. It also indicates the EMIT’s utility in filling data gaps and offering high-resolution monitoring. This study underscores the need for further research in hyperspectral imaging for aquatic ecosystems, especially under challenging atmospheric conditions, enhancing our understanding of water quality dynamics.

关键词： Satellites Statistical analysis Algae Water quality Lakes Filling Minerals

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Over the Quantum Rainbow: Explaining Hybrid Quantum Reinforcement Learning

Over the Quantum Rainbow: Explaining Hybrid Quantum Reinforc...

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Quantum Computing and Engineering (QCE), IEEE International Conference on

作者： Junghoon Park Jiook Cha Samuel Yen-Chi Chen Shinjae Yoo Huan-Hsin Tseng Interdisciplinary Program in Artificial Intelligence Seoul National University Department of Psychology Seoul National University Department of Brain and Cognitive Sciences Seoul National University Graduate School of Data Science Seoul National University Wells Fargo Computational Science Initiative Brookhaven National Laboratory

ISBN: (数字)9798331541378

ISBN: (纸本)9798331541385

In the realm of artificial intelligence, deep rein-forcement learning (RL) agents struggle with generalizability and require substantial computational resources, unlike humans who easily adapt and generalize across tasks. To address these challenges, we introduce Quantum Rainbow, a hybrid algorithm that leverages the neural mechanisms of human decision-making and the efficiency of quantum computing. Quantum Rainbow combines variational quantum circuits with the Rainbow Deep Q-Network (DQN) model to create a novel approach in rein-forcement learning that integrates quantum principles into deep learning paradigms. We evaluate our model using behavioral experiments through the Iowa Gambling Task and 4-Armed Bandit Task. Our investigations reveal a significant relationship between the architecture of quantum circuits and the performance of quantum RL agents. Specifically, using causal discovery methods, we demonstrate the critical role of quantum entanglement in enhancing model performance. These findings not only show promising results but also pave the way for future explorations into optimizing quantum circuit architectures for reinforcement learning applications. This study underscores the potential of quantum-enhanced algorithms to achieve “quantum advantage” by addressing fundamental limitations in conventional deep RL methods.

关键词： Analytical models Quantum computing Quantum algorithm Quantum advantage Quantum entanglement computational modeling Reinforcement learning Quantum state Integrated circuit modeling Quantum circuit

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Linkages of the 2022 Unprecedented Global Heatwave Events to Triple-Dip La Niña

Linkages of the 2022 Unprecedented Global Heatwave Events to...

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IEEE International Symposium on Geoscience and Remote Sensing (IGARSS)

作者： Sachi Perera Joshua B. Fisher Mohamed Allali Hesham El-Askary Computational and Data Sciences Graduate Program Schmid College of Science and Technology Chapman University Orange CA USA Earth Systems Science and Data Solution Lab Chapman University Orange CA USA Schmid College of Science and Technology Chapman University Orange CA USA Fowler School of Engineering Chapman University Orange CA USA Department of Environmental Sciences Faculty of Science Alexandria University Alexandria Egypt

ISBN: (数字)9798350360325

ISBN: (纸本)9798350360332

Heatwaves are influenced significantly by El Niño-Southern Oscillation (ENSO), which alters temperature and precipitation patterns throughout the world. Since 2020, we have witnessed a "triple dip" La Niña conditions persisting for three consecutive years resulting in severe weather and climate driven events globally. In this study, we identified the dominant frequency of Niño 3.4 Sea Surface Temperature (SST) signals and correlated them with regions experiencing unprecedented heat waves in 2022, namely, the Indian Ocean, the North Atlantic around England and Spain, and the Mediterranean Sea. The signal's power spectrum and its three highest power components are determined based on the signal's Singular Spectrum Analysis (SSA) for each region. Furthermore, the power spectrum coherence (PSC) of Niño 3.4 and other study regions is obtained to determine whether ENSO and heatwaves are linked. We find that Niño 3.4 and the Indian Ocean have the same dominant frequency for the highest power received, indicating ENSO's influence on the Indian heat wave. Additionally, we discovered that in March 2022, the Jet stream is essential in bringing warm Arctic waves southward, passing through Niño 3.4 and India. Furthermore, we found that no other region shared the dominant frequency of the Niño 3.4 region.

关键词： Heating systems Couplings Sea surface Precipitation Surface waves Indian Ocean Geoscience and remote sensing

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Enhancing Sustainable Development Goals Through Future Vapor Pressure Deficit Analysis In The Nile River Basin

Enhancing Sustainable Development Goals Through Future Vapor...

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IEEE International Symposium on Geoscience and Remote Sensing (IGARSS)

作者： Surendra Maharjan Wenzhao Li Shahryar Fazli Hani Sewilam Hesham El-Askary Computational and Data Sciences Graduate Program Schmid College of Science and Technology Chapman University Orange CA USA Earth Systems Science and Data Solutions Lab Chapman University Orange CA USA The Center for Applied Research on the Environment and Sustainability The American University in Cairo Cairo Egypt Department of Engineering Hydrology RWTH Aachen University Aachen Germany Department of Environmental Sciences Faculty of Science Alexandria University Alexandria Egypt

ISBN: (数字)9798350360325

ISBN: (纸本)9798350360332

Vapor Pressure Deficit (VPD) is crucial in meteorology and agriculture for understanding plant-environment interactions. Its application as an indicator in agricultural practices notably advances Sustainable Development Goals such as Zero Hunger (SDG 2) and Climate Action (SDG 13). This research focuses on the impact of climate change on agricultural productivity and food security in the Nile River Basin (NRB), emphasizing the role of VPD, temperature, and precipitation. Utilizing Coupled Model Intercomparison Project Phase 6 (CMIP6) datasets from NEX-GDDP-CMIP6, the study analyzes key climatic variables that influence agricultural conditions. The study applies the Mann-Kendall test to evaluate VPD trends from 2000 to 2060 under two Shared Socioeconomic Pathways (SSPs), SSP2-4.5 and SSP5-8.5. The study's findings on the implications of rising VPD levels in the Nile River Basin (NRB), particularly under the SSP 5-8.5 scenario, highlight a critical challenge for the region's agricultural productivity and food security. The increased VPD, indicative of drier conditions, leads to a moisture deficit for crops, potentially reducing agricultural yields. This scenario poses a significant threat to food security, as lower crop yields can result in food shortages and higher food prices, adversely affecting vulnerable populations. The study underscores the necessity of integrating VPD insights into agricultural and water resource management strategies to uphold food security against climatic variations in support of the SDGs.

关键词： Productivity Climate change Precipitation Food security Agriculture Rivers Sustainable development

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The Fisher Geometry and Geodesics of the Multivariate Normals, without Differential Geometry

arXiv

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arXiv 2023年

作者： Lawson, Brodie A.J. Burrage, Kevin Mengersen, Kerrie Santos, Rodrigo Weber dos Centre for Data Science Queensland University of Technology Australia School of Mathematical Sciences Queensland University of Technology Australia ARC Centre of Excellence for Plant Success in Nature and Agriculture Australia Department of Computer Science University of Oxford United Kingdom Graduate Program in Computational Modeling Universidade Federal de Juiz de Fora Brazil

Choosing the Fisher information as the metric tensor for a Riemannian manifold provides a powerful yet fundamental way to understand statistical distribution families. Distances along this manifold become a compelling measure of statistical distance, and paths of shorter distance improve sampling techniques that leverage a sequence of distributions in their operation. Unfortunately, even for a distribution as generally tractable as the multivariate normal distribution, this information geometry proves unwieldy enough that closed-form solutions for shortest-distance paths or their lengths remain unavailable outside of limited special cases. In this review we present for general statisticians the most practical aspects of the Fisher geometry for this fundamental distribution family. Rather than a differential geometric treatment, we use an intuitive understanding of the covariance-induced curvature of this manifold to unify the special cases with known closed-form solution and review approximate solutions for the general case. We also use the multivariate normal information geometry to better understand the paths or distances commonly used in statistics (annealing, Wasserstein). Given the unavailability of a general solution, we also discuss the methods used for numerically obtaining geodesics in the space of multivariate normals, identifying remaining challenges and suggesting methodological *** Codes 62B11 (primary), 62-02, 62-08 (secondary) © 2023, CC BY.

关键词： Geometry

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Drivetrain simulation using variational autoencoders

arXiv

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arXiv 2025年

作者： Sharma, Pallavi Urrea-Quintero, Jorge-Humberto Bogdan, Bogdan Ciotec, Adrian-Dumitru Vasilie, Laura Wessels, Henning Skull, Matteo Porsche Engineering Etzelstraße 1 Bietigheim-Bissingen74321 Germany Graduate Program Computational Sciences in Engineering Technische Universität Braunschweig Braunschweig Germany Fraunhofer Institute for Energy Economics and Energy System Technology Joseph-Beuys-Straße 8 Kassel34117 Germany Institute of Applied Mechanics Division Data-Driven Modeling of Mechanical Systems Technische Universität Braunschweig Pockelsstraße 3 Braunschweig38106 Germany

This work proposes variational autoencoders (VAEs) to predict a vehicle’s jerk from a given torque demand, addressing the limitations of sparse real-world datasets. Specifically, we implement unconditional and conditional VAEs to generate jerk signals that integrate features from different drivetrain scenarios. The VAEs are trained on experimental data collected from two variants of a fully electric SUV, which differ in maximum torque delivery and drivetrain configuration. New meaningful jerk signals are generated within an engineering context through the interpretation of the VAE’s latent space. A performance comparison with baseline physics-based and hybrid models confirms the effectiveness of the VAEs. We show that VAEs bypass the need for exhaustive manual system parametrization while maintaining physical plausibility by conditioning data generation on specific inputs. © 2025, CC BY.

关键词： Signal encoding

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Biomedical data and AI

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Science China Life sciences 2025年第5期68卷 1536-1540页

作者： Hao Xu Shibo Zhou Zefeng Zhu Vincenzo Vitelli Liangyi Chen Ziwei Dai Ning Yang Luhua Lai Shengyong Yang Sergey Ovchinnikov Zhuoran Qiao Sirui Liu Chen Song Jianfeng Pei Han Wen Jianfeng Feng Yaoyao Zhang Zhengwei Xie Yang-Yu Liu Zhiyuan Li Fulai Jin Hao Li Mohammad Lotfollahi Xuegong Zhang Ge Yang Shihua Zhang Ge Gao Pulin Li Qi Liu Jing-Dong Jackie Han Peking-Tsinghua Center for Life Sciences (CLS) Academy for Advanced Interdisciplinary StudiesPeking University Center for Quantitative Biology (CQB) Academy for Advanced Interdisciplinary StudiesPeking University Peking University-Tsinghua University-National Institute of Biological Sciences Joint Graduate Program Academy for Advanced Interdisciplinary StudiesPeking University Department of Physics University of Chicago School of Life Sciences Southern University of Science and Technology Peking University Chengdu Academy for Advanced Interdisciplinary Biotechnologies College of Chemistry and Molecular Engineering Peking University Department of Biotherapy Cancer Center and State Key Laboratory of BiotherapyWest China HospitalSichuan University Department of Biology Massachusetts Institute of Technology Lambic Therapeutics Inc. Changping Laboratory Al for Science Institute Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence Fudan University Department of Obstetrics and Gynecology West China Second University HospitalSichuan University Peking University International Cancer Institute and Peking University-Yunnan Baiyao International Medical Institute and State Key Laboratory of Natural and Biomimetic Drugs Department of Molecular and Cellular PharmacologySchool of Pharmaceutical SciencesPeking University Health Science CenterPeking University Channing Division of Network Medicine Department of MedicineBrigham and Women's Hospital and Harvard Medical School Center for Artificial Intelligence and Modeling the Carl R.Woese Institute for Genomic BiologyUniversity of Illinois Urbana-Champaign Department of Genetics and Genome Sciences School of Medicine and Department of Computer and Data Sciences and Department of Population and Quantitative Health SciencesCase Western Reserve University Department of Biochemistry and Biophysics University of California Sanger Institute Department of Automation Tsinghua University State Key Laboratory of Multimodal Artificial Intelligence Systems I

The development of artificial intelligence(AI) and the mining of biomedical data complement each other. From the direct use of computer vision results to analyze medical images for disease screening, to now integrating biological knowledge into models and even accelerating the development of new AI based on biological discoveries, the boundaries of both are constantly expanding, and their connections are becoming closer.

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Experimental and real-world evidence supporting the computational repurposing of bumetanide for APOE4-related Alzheimer's disease ( Oct, 10.1038/s43587-021-00122-7, 2021)

NATURE AGING

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NATURE AGING 2021年第12期1卷 1202-1202页

作者： Taubes, Alice Nova, Phil Zalocusky, Kelly A. Kosti, Idit Bicak, Mesude Zilberter, Misha Y. Hao, Yanxia Yoon, Seo Yeon Oskotsky, Tomiko Pineda, Silvia Chen, Bin Jones, Emily Aery A. Choudhary, Krishna Grone, Brian Balestra, Maureen E. Chaudhry, Fayzan Paranjpe, Ishan De Freitas, Jessica Koutsodendris, Nicole Chen, Nuo Wang, Celine Chang, William An, Alice Glicksberg, Benjamin S. Sirota, Marina Huang, Yadong Gladstone Institute of Neurological Disease Gladstone Institutes San Francisco CA USA Biomedical Sciences Graduate Program University of California San Francisco CA USA Gladstone Center for Translational Advancement Gladstone Institutes San Francisco CA USA Department of Neurology University of California San Francisco CA USA Bakar Computational Health Sciences Institute University of California San Francisco CA USA Department of Pediatrics University of California San Francisco CA USA Hasso Plattner Institute for Digital Health at Mount Sinai Icahn School of Medicine at Mount Sinai New York NY USA Department of Genetics and Genomic Sciences Icahn School of Medicine at Mount Sinai New York NY USA Department of Surgery University of California San Francisco CA USA Gladstone Institute of Data Science and Biotechnology Gladstone Institutes San Francisco CA USA Development and Stem Cell Biology Graduate Program University of California San Francisco CA USA Department of Pathology University of California San Francisco CA USA

The evident genetic, pathological and clinical heterogeneity of Alzheimer’s disease (AD) poses challenges for traditional drug development. We conducted a computational drug-repurposing screen for drugs to treat apolipoprotein E4 (APOE4)-related AD. We first established APOE genotype-dependent transcriptomic signatures of AD by analyzing publicly available human brain databases. We then queried these signatures against the Connectivity Map database, which contains transcriptomic perturbations of more than 1,300 drugs, to identify those that best reverse APOE genotype-specific AD signatures. Bumetanide was identified as a top drug for APOE4-related AD. Treatment of APOE4-knock-in mice without or with amyloid β (Aβ) accumulation using bumetanide rescued electrophysiological, pathological or cognitive deficits. Single-nucleus RNA sequencing revealed transcriptomic reversal of AD signatures in specific cell types in these mice, a finding confirmed in APOE4 induced pluripotent stem cell (iPSC)-derived neurons. In humans, bumetanide exposure was associated with a significantly lower AD prevalence in individuals over the age of 65 years in two electronic health record databases, suggesting the effectiveness of bumetanide in preventing AD.

关键词： Ageing Alzheimer's disease computational neuroscience Life sciences general

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