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Including gap junctions into distributed neuronal network simulations 1

2nd International Workshop on Brain-Inspired Computing, BrainComp 2015

作者： Hahne, Jan Helias, Moritz Kunkel, Susanne Igarashi, Jun Kitayama, Itaru Wylie, Brian Bolten, Matthias Frommer, Andreas Diesmann, Markus School of Mathematics and Natural Sciences University of Wuppertal Wuppertal Germany and JARA BRAIN Institute I Jülich Research Centre Jülich Germany RIKEN Advanced Institute for Computational Science Programming Environment Research Team Kobe Japan Department of Computational Science and Technology School of Computer Science and Communication KTH Royal Institute of Technology Stockholm Sweden Simulation Laboratory Neuroscience Bernstein Facility for Simulation and Database Technology Institute for Advanced Simulation Jülich Aachen Research Alliance Jülich Research Centre Jülich Germany Okinawa Institute of Science and Technology Neural Computation Unit Okinawa Japan Laboratory for Neural Circuit Theory RIKEN Brain Science Institute Wako Japan HPC Usability Research Team RIKEN Advanced Institute for Computational Science Kobe Japan Jülich Supercomputing Centre Jülich Research Centre Jülich Germany Institut für Mathematik Universität Kassel Kassel Germany Department of Psychiatry Psychotherapy and Psychosomatics Medical Faculty RWTH Aachen University Aachen Germany Department of Physics Faculty 1 RWTH Aachen University Aachen Germany

ISBN: (数字)9783319508627

ISBN: (纸本)9783319508610

Contemporary simulation technology for neuronal networks enables the simulation of brain-scale networks using neuron models with a single or a few compartments. However, distributed simulations at full cell density are still lacking the electrical coupling between cells via so called gap junctions. This is due to the absence of efficient algorithms to simulate gap junctions on large parallel computers. The difficulty is that gap junctions require an instantaneous interaction between the coupled neurons, whereas the efficiency of simulation codes for spiking neurons relies on delayed communication. In a recent paper [15] we describe a technology to overcome this obstacle. Here, we give an overview of the challenges to include gap junctions into a distributed simulation scheme for neuronal networks and present an implementation of the new technology available in the NEural Simulation Tool (NEST 2.10.0). Subsequently we introduce the usage of gap junctions in model scripts as well as benchmarks assessing the performance and overhead of the technology on the supercomputers JUQUEEN and K computer. © Springer International Publishing AG 2016.

关键词： Supercomputers

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Graphical simulation of a new concept of low sized surgical parallel robot for camera guidance in minimally invasive surgery

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PAMM 2008年第1期7卷

作者： C. Vaida D. Pisla N. Plitea Department for Mechanics and Computer Programming TU Cluj-Napoca C. Daicoviciu Str. 15 RO-400020 Cluj-Napoca Romania Phone: +00 40 264 401684 Fax: +00 40 264 415676 Phone: +00 40 264 401655 Fax: +00 40 264 415676

Robotic systems have been developed in every field where a further progress was constricted due to the human limitations in terms of speed, precision, fatigue, repeatability, strength, safety etc. One of the pioneer fields for robots is their assimilation in surgery, especially in minimally invasive procedures which aim the treatment of a disease with minimum damage to healthy tissue and suffering for the patient [1], [2]. The paper presents a complex simulation system used for the study of the characteristics of a new low sized parallel robot used for minimally invasive surgery (MIS). (© 2008 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim)

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Preface

Lecture Notes in Computer Science (including subseries Lectu...

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Lecture Notes in computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2011年 6546 LNCS卷

作者： Page, Rex Horváth, Zoltán Zsók, Viktória University of Oklahoma School of Computer Science 110 West Boyd Street NormanOK73019 United States Eötvös Loránd University Faculty of Informatics Department of Programming Languages and Compilers Pázmány Péter sétány 1/C Budpest1117 Hungary

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CONCURRENT BOUNDARY-ELEMENT COMPUTATION

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INTERNATIONAL JOURNAL OF NUMERICAL MODELLING-ELECTRONIC NETWORKS DEVICES AND FIELDS 1993年第2期6卷 83-98页

作者： MCDOWALL, DS LEE, TW FUSCO, VF Microwave Research Group Department of Electrical and Electronic Engineering The Queen's University of Belfast Ashby Building Stranmillis Road Belfast BT9 5AH Northern Ireland U.K. D. Stewart McDowall was born in Dublin epublic of Ireland in 1967. He received the M. Eng. degree in Electrical and Electronic Engineering from the Queen's University of Belfast in 1990. In the same year he was presented with a Distinction Award from the Department of Education of Northern Ireland and he is currently pursuing his Ph.D. in the Microwave Research Group at Q.U.B. His principal research area is the electromagnetic field mapping of microwave systems using concurrient programming. He is an Associate Member of the Institute of Electrical Engineers. Lee Thaim Wee was awarded the degree of B. Eng. in Electronics from the Queen's University of Belfast in July 1991. He is currently serving in the Malaysian Armed Forces. Vincent F. Fusco was educated at the Queen's Univeristy of Belfast where he obtained the degree of Ph.D. in 1982. He has worked as a research engineer on short-range radar and radio telementry systems. Currently he is a reader in Microwave Communications in the School of Electrical Engineering and Computer Science the Queen's Univeristy of Belfast. His current research interests include non-linear microwave circuit simulation and concurrent programming techniques for electromagnetic field problems with particular emphasis on EMC applications. He has published numerous research papers in these areas. He is the author of the bookMicrowave Circuits Analysis and Computer Aided Design Prentice-Hall 1987. Dr Fusco is a Chartered Electrical Engineer and a Member of the Institute of Electrical Engineers.

A major limitation of the boundary element method (BEM) for the solution of electrical potential problems is the long computational time required. However, a large portion of the calculations involved can be viewed as being parallel in nature and can therefore be computed concurrently. This paper makes an effort to increase the efficiency of the BEM process using transputer-based multiprocessor computing techniques. The algorithms developed may equally well be applied to any multiprocessor system. The application selected to demonstrate the technique is the solution of an electrostatic problem governed by a two-dimensional Laplace equation. A parallel algorithm for problem setup and field extraction using BEM is designed and implemented on a transputer array. Special attention is directed to the utilization of the parallel processors to achieve maximum efficiency. The analysis in this work concentrates on the communication strategies for passing data between processors as well as a consideration of the workload attributed to each processor. The parallel algorithms were implemented using 3L Parallel Fortran;however, the choice of topology for the overall BEM implementation was limited by the fact that certain parts of the algorithm could only utilize a pipeline configuration of processors. Comprehensive results for the parallel BEM algorithm are given and they are encouraging, indicating that parallel processing has much to offer when applied to the boundary element method.

关键词： Boundary element method

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Novel symmetric numerical methods for solving symmetric mathematical problems

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International Journal of Circuits, Systems and Signal Processing 2021年 15卷 1545-1557页

作者： Ibrahimov, V.R. Mehdiyeva, G.Y.U. Yue, Xiao-Guang Kaabar, Mohammed K.A. Noeiaghdam, Samad Juraev, Davron Aslonqulovich Institute of Control Systems named after Academician A.Huseynov BakuAZ1141 Azerbaijan Computational mathematics Baku State University BakuAZ1148 Azerbaijan Department of Computer Science and Engineering School of Sciences European University Cyprus Nicosia1516 Cyprus Institute of Mathematical Sciences Faculty of Science University of Malaya Kuala Lumpur50603 Malaysia Department of Mathematics and Statistics Washington State University PullmanWA99163 United States Industrial Mathematics Laboratory Baikal School of BRICS Irkutsk National Research Technical University Irkutsk664074 Russia Department of Applied Mathematics and Programming South Ural State University Lenin Prospect 76 Chelyabinsk454080 Russia Department of Natural Science Disciplines Higher Military Aviation School of the Republic of Uzbekistan Karshi City180100 Uzbekistan

—The mathematical model for many problems is arising in different industries of natural science, basically formulated using differential, integral and integro-differential equations. The investigation of these equations is conducted with the help of numerical integration theory. It is commonly known that a class of problems can be solved by applying numerical integration. The construction of the quadrature formula has a direct relation with the computation of definite integrals. The theory of definite integrals is used in geometry, physics, mechanics and in other related subjects of science. In this work, the existence and uniqueness of the solution of above-mentioned equations are investigated. By this way, the domain has been defined in which the solution of these problems is equivalent. All proposed four problems can be solved using one and the same methods. We define some domains in which the solution of one of these problems is also the solution of the other problems. Some stable methods with the degree p © 2021, North Atlantic University Union NAUN. All rights reserved.

关键词： Integrodifferential equations

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S--Ideals: A Study in Commutative and Noncommutative Rings

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Journal of Mathematics 2024年第1期2024卷

作者： Alaa Abouhalaka Hatice Çay Bayram Ali Ersoy Department of Mathematics Çukurova University Balcalı Adana 01330 Turkey cu.edu.tr Computer Programming IMU Vocational School Istanbul Medipol University Beykoz Istanbul 34810 Turkey medipol.edu.tr Department of Mathematics Yildiz Technical University Esenler Istanbul 34220 Turkey yildiz.edu.tr

In this paper, we introduce the concept of S - -ideals in both commutative and noncommutative rings. For a commutative ring R and a multiplicatively closed subset S , we show that many properties of -ideals apply to S - -ideals and examine their characteristics in various ring constructions, such as homomorphic image rings, quotient rings, cartesian product rings, polynomial rings, power series rings, idealization rings, and amalgamation rings. In noncommutative rings, where S is an m -system, we define right S - -ideals. We demonstrate the equivalence of S - -ideals and right S - -ideals in commutative rings with identity and provide examples to illustrate the connections between right S -prime ideals and -ideals.

关键词： commutative ring 𝒥-ideal m-system multiplicatively closed subset noncommutative ring S-𝒥-ideals 16N20 16N40 16N60 16N80 16W99

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Principles of organizing a hardware of information collection system perceptron for a quantum hashing problem

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AIP Conference Proceedings 2024年第1期2969卷

作者： V. D. Munister A. L. Zolkin A. I. Dzhangarov Department of mathematical methods and system analysis Mariupol State University Prospect Builders 129 a Mariupol 87500 Ukraine Computer and Information Sciences Department Povolzhskiy State University of Telecommunications and Informatics Samara 443010 Russia Department of Programming and Information and Communication Kadyrov Chechen State University 32 Sheripova Street Groznyy 364093 Russia

The article raises the issue of organizing the signal processing process in existing classes of digital systems and analogue-to-digital converters. The authors indicate a significant problem of the synthesis of controlled action (and its adequate perception by the control system through the "sensory level of perception", in particular, the aspectology of redundancy in computing power and the problem of choice and delegation in stream processing of signals).A solution for an information system for collecting and managing data based on peripheral interrogation of sensors is generalized and formalized. For the first time authors are developing a new class of hardware devices that combine the principles of organization of neural pathogens (perceptrons) that work within the activation function and trend line (neural memory), and quantum logic in a Boolean basis. The functional testing of the developed device is presented, the simplicity and reliability of the hardware implementation is indicated. While formulating research methods, the goal is to develop a reliable integrative system for information support of the hardware circuit system. A structural block of controlled addiction has been implemented, taking into account quantum caching that is taken as a mean of ensuring the unity and consistency of data transmission from the measuring environment in case of increasing its structural component. Options for the practical implementation of the information and analytical structure of the hardware perceptron in the industrial Internet of Things are considered in the conclusion.

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SusTrainable: Promoting Sustainability as a Fundamental Driver in Software Development Training and Education Teacher Training November 1–5, Nijmegen, The Netherlands Revised lecture notes

arXiv

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arXiv 2022年

作者： Koopman, Pieter Lubbers, Mart Fernandes, João Paulo Korečko, Štefan Paquete, Luís Porkoláb, Zoltán Szalay, Richárd Mauša, Goran Oprescu, Ana Koedijk, Lukas van Oostveen, Sander Kok, Stephan Li, Jianhao Zsók, Viktória Grbac, Tihana Galinac Grbac, Neven Valkanov, Vladimir Petrov, Mihail Radboud University Nijmegen Netherlands University of Porto Portugal Department of Computers and Informatics Faculty of Electrical Engineering and Informatics Technical University of Košice Slovakia CISUC Department of Informatics Engineering University of Coimbra Portugal Department of Programming Languages and Compilers Institute of Computer Science Faculty of Informatics Eötvös Lorád University Budapest Hungary University of Rijeka Faculty of Engineering Vukovarska 58 Rijeka51000 Croatia Complex Cyber Infrastructure University of Amsterdam Netherlands KPMG Software Engineering Master University of Amsterdam Netherlands Informatics Institute University of Amsterdam Netherlands Juraj Dobrila Univeristy of Pula Zagrebačka 30 PulaHR-52100 Croatia University Of Plovdiv "Paisii Hilendarski" Faculty of Mathematics and Informatics 24 Bulgaria Blvd. Plovdiv4027 Bulgaria

These are the proceedings of the first teacher training of the Erasmus+ project No. 2020-1-PT01-KA203-078646 -- Sustrainable. The full title of this project is Promoting Sustainability as a Fundamental Driver in Software Development Training and Education and the interested reader may know more about it at: https://*** The flagship contribution is the organization of two summer schools on sustainable software production. The first summer school is moved due to the Corona pandemic. It is now scheduled for July 2022 in Rijeka, Croatia. This summer school will consist of lectures and practical work for master and PhD students in the area of computing science and closely related fields. There will be contributions from Plovdiv University, University of Ko\v{s}ice, University of Coimbra, University of Minho, E\"otv\"os Lor\'and University, University of Rijeka, Radboud University Nijmegen, University of Pula, University of Amsterdam and Babe\c{s}-Bolyai University. To prepare and streamline this summer school, the consortium organized a teacher training in Nijmegen, the Netherlands. This was an event of five full days on November 1-5, 2022 organized by Ingrid Berenbroek, Mart Lubbers and Pieter Koopman on the campus of the Radboud University Nijmegen, The Netherlands. Sustainability is one of the themes within the strategy of the Radboud University called `A Significant Impact', see https://***/sustainability/organisation/radboud-sustainable/. Sustainability plays an important role in education, research, and management. The contributions were reviewed and give a good overview of what can be expected from the summer school. Based on these papers and the very positive and constructive atmosphere, we expect a high quality and pleasant summer school. We are looking forward to contributing to a sustainable future. © 2022, CC BY-NC-ND.

关键词： Personnel training

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TLM MODELING USING AN SIMD computer

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INTERNATIONAL JOURNAL OF NUMERICAL MODELLING-ELECTRONIC NETWORKS DEVICES AND FIELDS 1993年第4期6卷 299-304页

作者： TAN, CC FUSCO, VF The Queen's University of Belfast Department of Electrical & Electronic Engineering Ashby Building Stranmillis Road Belfast BT9 5AH U.K. Chun Chia Tan obtained a first-class honours degree from The Queen's University of Belfast. He was awarded an IEE prize for best final-year project. His current research interests include the modelling of electromagnetic fields using parallel processing techniques. At present Mr Tan is working as an electrical engineer in Malaysia. Vincent F. Fusco was educated at The Queen's University of Belfast where he obtained the degree of Ph.D. He has worked as a research engineer on short-range radar and radio telementry systems. Currently he is a Reader in Microwave Commnications in the School of Electrical Engineering and Computer Science The Queen's Univeristy of Belfast. His current research interests include non-linear microwave circuit simulation and concurrent programming techniques for electromagnetic field problems. He has acted as consultant to a number of major companies and has published numerous research papers in these areas. He is author of the bookMicrowave Circuits Analysis and Computer Aided Design(Prentice Hall 1987). Dr Fusco is a Chartered Electrical Engineer and a Member of the Institute of Electrical Engineers.

A major limitation of the transmission-line matrix (TLM) method used to solve Maxwell's equations is the long computation time required. The TLM scattering calculations involved can, however, be viewed as parallel in nature. This paper describes an effort to reduce computational time by using an SIMD, DAP multiprocessor computer employed to solve a two-dimensional TLM electromagnetic field formulation. A parallel algorithm based on the TLM scattering algorithm is designed and implemented using FORTRAN-PLUS Enhanced on an AMT DAP 510 machine. Here the connectivity of the DAP is exploited to simulate the intrinsic scattering behaviour on which the TLM algorithm relies. The results show that parallel processing on an SIMD machine such as the DAP is advantageous, especially for higher-order mesh sizes.

关键词： Electric lines

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Studies Regarding the Alternate Simulation Techniques for Machine Toolsand Industrial Robots

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PAMM 2004年第1期4卷

作者： A. Pisla D. Pisla Department for Machine Tools and Industrial Robots TU Cluj-Napoca C. Daicoviciu Str. 15 RO-400020 Cluj-Napoca Romania Department for Mechanics and Computer Programming TU Cluj-Napoca C. Daicoviciu Str. 15 RO-400020 Cluj-Napoca Romania Phone: +00 40 264 401684 Fax: +00 40 264 415676

In the paper are presented results regarding the design, simulation and testing of some robotized structures with parallel kinematics in order to identify appropriate simulation techniques and to reveal the properties of particular studied characteristics. The paper is structured in three parts: introduction regarding the tasks of the simulations techniques and the developed applications, comparison of the results obtained in simulations, considering the working space modelling accuracy and the speed of workspace identification and the last part conclusions. (© 2004 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim)

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