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A Bayesian-based approach for extracting the pion charge radius from electron-electron scattering data

Chinese Physics C 2021年第8期45卷 12-27页

作者： Alam A Hidayat Bens Pardamean Bioinformatics and Data Science Research Center Bina Nusantara UniversityJakarta 11480Indonesia Computer Science Department BINUS Graduate Program-Master of Computer ScienceBina Nusantara UniversityJakarta 11480Indonesia

In this study,we utilize a potentially versatile Bayesian parameter approach to compute the value of the pion charge radius and quantify its uncertainty from several experimental e^(+)e^(-) datasets for the pion vector form *** employ dispersion relations to model the pion vector form factor to extract the *** model selection is used to determine the order of polynomial appearing in the form factor formulation that can be supported by the data,adapting the computation of Bayes evidence and Bayesian effective complexity based on Occam's *** findings indicate that five out of six used datasets favor the nine-parameter model for radius extraction,and accordingly,we average the radii from the *** some inconsistencies with the most updated radius values,our approach may serve as a more intuitive method of addressing parameter estimations in dispersion theory.

关键词： Bayesian complexity dispersion hadron pion

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Exploring EfficientNet Variants for Image Encoding in Auxiliary Signal Guided Knowledge Encoder-Decoder Framework

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Procedia computer science 2024年 245卷 391-398页

作者： Matthew Martianus Henry Nur Adhianti Heryanto Bens Pardamean Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta Indonesia 11480 Computer Science Department BINUS Graduate Program - Master of Computer Science Bina Nusantara University Jakarta Indonesia 11480

The growing number of medical images has led to radiologist burnout, which seriously impacts the radiologist's performance. To address the previously mentioned issue, an Auxiliary Signal Guided Knowledge (ASGK) multimodal encoder-decoder framework was designed to automatically generate the medical report based on the proposed medical graph and natural language decoder. It utilizes DenseNet-121 as the image encoder. With DenseNet-121 lack of computational and memory efficiency, this study aims to explore the potential of EfficientNetB0 to EfficientNetB4 as an ASGK image encoder substitute. The framework is trained with IU X-Ray dataset for 30 epochs, with Adam optimizer, a learning rate of 0.01 with 0.8 decay rate, binary cross entropy loss for the medical tags, and cross-entropy loss for the generated medical captions. During the framework training process with each image encoder, the parameter that achieves the highest CIDEr score on the validation set is considered the best image encoder parameter and will be used on the test set. On the test set, EfficientNetB3 as an ASGK image encoder has been shown to increase the CIDEr score to 0.35, a significant increase from the 0.28 CIDEr score obtained by the ASGK using DenseNet-121. This score is only a 1% decrease from the best validation score. It suggests that not only EfficientNetB3 increases the framework's performance, it is also less prone to overfitting. This study has demonstrated that EfficientNetB3 is a potential image encoder substitute for DenseNet-121 in the ASGK framework.

关键词： Automated medical report generation DenseNet-121 EfficientNet Encoder-decoder framework

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Semi-automated meningioma segmentation with bounding boxes

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Procedia computer science 2024年 245卷 583-590页

作者： Nur Adhianti Heryanto Mahmud Isnan Matthew Martianus Henry Bens Pardamean Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta Indonesia 11480 Computer Science Department BINUS Graduate Program - Master of Computer Science Bina Nusantara University Jakarta Indonesia 11480

Segmentation is manually performed by physicians, which takes considerable time and may be subject to observers. Automating this task can increase efficiency and consistency. Existing studies on meningioma segmentation used data from limited study centers, indicating the need for research on multi-center data to assess generalizability. In this work, two semi-automated methods with bounding box priors, LiteMedSAM and BBU-Net, are evaluated on the brain tumor segmentation (BraTS) 2023 meningioma dataset collected from five study-centers. Preprocessing included exclusion of small tumors, z-score normalization, and extraction of slices that contain tumors, generating 25,602 2D axial magnetic resonance imaging (MRI) scans. A fine-tuning strategy is adopted for LiteMedSAM while BBU-Net is trained from scratch. The models are evaluated using a five-fold cross-validation, with data split at the case level. Results show that while U-Net models can achieve performance close to LiteMedSAM, the foundation model has overall better performance, with more than 90% in all evaluation scores.

关键词： Bounding boxes Meningioma Semi-automated segmentation

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LDA Topic Modeling for Bioinformatics Terms in arXiv Documents

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Procedia computer science 2024年 245卷 229-238页

作者： Andrea Stevens Karnyoto Matthew Martianus Henry Bens Pardamean Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta Indonesia 11480 Computer Science Department BINUS Graduate Program - Master of Computer Science Bina Nusantara University Jakarta Indonesia 11480

A wide variety of disciplines contribute to bioinformatics research, including computer science, biology, chemistry, mathematics, and physics. This study determines the number of research articles published on arXiv classified as bioinformatics topics and the most frequently used bioinformatics terms using topic modeling, Latent Dirichlet Allocation (LDA). An algorithm based on LDA is used to discover topics hidden within large collections of documents through the use of statistical analysis. Our research examined 226453 articles on arXiv between January 2023 and January 2024. As a result, there are more than 10521 articles categorized into bioinformatics topics. Most commonly, 6352 documents are in the "Mathematical Physics" category. The second most popular category is "computer science," with 2950 documents. Accordingly, the terms 'RNA,' 'sequence,' 'tree,' and 'homology' are the three most commonly used terms in bioinformatics. The study of RNA plays a vital role in molecular biology; thus, the study of RNA is prevalent in bioinformatics. Sequential data refer to the order in which nucleotides or amino acids can be found in a DNA molecule or a protein.

关键词： arXiv bioinformatics Latent Dirichlet Allocation

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Automatic question generation for bahasa indonesia examination using copynet

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Procedia computer science 2024年 245卷 953-962页

作者： Matthew Martianus Henry Gregorius Natanael Elwirehardja Bens Pardamean Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta Indonesia 11480 Computer Science Department School of Computer Science Bina Nusantara University Jakarta Indonesia 11480 Computer Science Department BINUS Graduate Program - Master of Computer Science Bina Nusantara University Jakarta Indonesia 11480

In educational institutions, an educator is responsible for assessing the student's knowledge grasp through examination. Creating exam questions, even the low-level factoid questions, is time-consuming, especially for inexperienced educators. Therefore, this study aims to create a sequence-to-sequence model using CopyNet by exploiting its copying mechanism advantage to automatically generate Bahasa Indonesia factoid questions to ease the educator's burden. Indonesian records in the TyDi QA dataset are used as the model input. GRU and Bi-GRU are employed as the CopyNet encoder, while LSTM is used as the CopyNet decoder. The model that utilizes GRU as the encoder achieves BLEU1, BLEU2, BLEU3, BLEU4, and ROUGE-L scores of 0.28, 0.19, 0.14, 0.1, and 0.32, respectively. Bi-GRU utilization as the model encoder achieves BLEU1, BLEU2, BLEU3, BLEU4, and ROUGE-L scores of 0.26, 0.17, 0.12, 0.09, and 0.30, respectively. Models using either encoder still achieve low scores. However, compared with the previous work, the result is still on par regarding the BLEU score. Further examination found that the generated questions do not adhere to semantic and syntactical correctness. Adding more records to the dataset and utilizing a more advanced architecture like CopyBERT are encouraged to improve the model performance in future work. Despite the result, this study has shown that CopyNet, primarily designed for text summarization or single-turn dialogue, can be tailored for factoid question generation.

关键词： Automatic question generation Bahasa Indonesia Copying mechanism Natural language generation Sequence-to-sequence

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Energy Efficiency in Sustainable Software Development: Clean Code Approaches

Energy Efficiency in Sustainable Software Development: Clean...

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International Conference on Electrical Engineering and computer science (ICECOS)

作者： Inayatullah Wijang Widhiarso Deris Stiawan Department Program in Engineering Science Faculty of Computer Science Universitas Multi Data Palembang Palembang Indonesia Department Program in Engineering Science Faculty af Computer Science Universitas Sriwijaya Palembang Indonesia Faculty of Computer Science Universitas Multi Data Palembang Palembang Indonesia Faculty af Computer Science Universitas Sriwijaya Palembang Indonesia

ISBN: (数字)9798350368253

ISBN: (纸本)9798350368260

The use of technology and information devices contributes to global warming. This issue has also become a concern for UN institutions, as stated in international environmental agreements, which aim to stabilize greenhouse gas emissions in the atmosphere at a level that prevents anthropogenic and dangerous disturbances to the environmental system. This research uses a line of code derived from the tanjak dataset, a student project from 2003 to 2020, numbering 500. This research aims to apply energy consumption efficiency to reduce CO2 emissions produced using computer devices, especially in developing software. The approach used in this research is clean code, which can provide benefits in the form of a line of code that is easy to read, understand, test, and maintain so that it can create savings in energy use. In the test, the line of code used was 1,072,089, producing an energy of 82,152.18 Joules, minus the line of code comments, which was 76,750, producing an energy of 2,971.25 Joules. Initial research results show that the clean code approach can be used to save energy usage, with the result of the line of code used being 995,339 and producing 79,180 Joules of energy, so it can affect reducing CO2 emissions when implementing software development.

关键词： Electrical engineering computer science Energy consumption Codes Software Global warming Energy efficiency Greenhouse gases Carbon emissions Software development management

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Pairwise Learning for Autism Spectrum Disorder Imbalanced Classification 6

Pairwise Learning for Autism Spectrum Disorder Imbalanced Cl...

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6th IEEE Eurasia Conference on Biomedical Engineering, Healthcare and Sustainability, ECBIOS 2024

作者： Liu, Shu Wu, Qiang Yang, Xin Computational and Data Science PhD Program Middle Tennessee State University MurfreesboroTN United States University of Tennessee Department of Mathematics KnoxvilleTN United States Middle Tennessee State University Department of Computer Science MurfreesboroTN United States

ISBN: (纸本)9798350396133

This paper performs a classification task on data obtained from the Autism Brain Imaging data Exchange (ABIDE) repository. In real-world case analysis, the number of autism spectrum disorder (ASD) patients is much smaller than typically developed people. To address this issue, this paper proposes the utilization of pairwise robust support vector machine (PRSVM) algorithms to classify autism spectrum disorder (ASD) patients. In this project's experiments, the correlation matrix derived from functional magnetic resonance imaging (fMRI) data was employed as a classification feature. A comprehensive evaluation was conducted to compare the classification performance of PRSVM with various machine learning methods. The comparative analysis encompassed various aspects, including different data dimensions, imbalanced ratios, and sample sizes, providing valuable insights into the relative performance of the algorithms under different experimental conditions. The experimental results demonstrate that PRSVM can detect autistic patients more accurately when the data is imbalanced. Moreover, the results indicate that PRSVM outperforms or achieves comparable performance to other conventional classification methods in a variety of situations. Furthermore, our approach can be further improved by augmenting the training set with either exclusively normal person samples or by incorporating patient samples and normal people samples in a proportionate manner. This augmentation strategy holds promising application value, as it contributes to improving the performance and robustness of our method. © 2024 IEEE.

关键词： Diseases

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Dermatological Diagnostics: A Unified Deep Learning Framework for Skin Lesion and Cancer Classification 1

Dermatological Diagnostics: A Unified Deep Learning Framewor...

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1st IEEE International Conference on Advances in Computing, Communication and Networking, ICAC2N 2024

作者： Kumar, Vinod Jain, Isha Dongla, Durga Sritha Rai, Shivangi Rastogi, Vani Kaushik, Eva Kaushik, Rohit George Washington University School of Engineering and Applied Science WashingtonDC United States Dr. Akhilesh Das Gupta Institute of Technology and Management Computer Science and Engineering Department New Delhi India Gandhi Institute of Technology and Management Computer Science and Engineering Department Andhra Pradesh Visakhapatnam India Data Scientist DXC Technology Noida India Data Analytics Program University of Illinois CS and Mathematics Department Springfield United States

ISBN: (纸本)9798350356816

Skin pathologies encompass a spectrum of conditions, with malignancies such as melanoma representing a critical diagnostic urgency. This investigation delineates the deployment of Convolutional Neural Networks (CNNs) for the classification of dermatological anomalies, benchmarking CNN diagnostic fidelity against dermatological expert evaluations. The study underscores the efficacy of CNN classifiers in expediting the diagnostic workflow for various cutaneous disorders. Advocating for an automated diagnostic framework, the research introduces a CNN-based system aimed at reducing human diagnostic load, accelerating diagnostic timelines, and enhancing survival outcomes. Utilizing advanced image processing algorithms and deep learning architectures, the research presents an automated classification system for skin pathologies, addressing both benign and malignant presentations. The classification matrix includes nine dermatological conditions: actinic keratosis, basal cell carcinoma, benign keratosis, dermatofibroma, melanoma, nevus, seborrheic keratosis, squamous cell carcinoma, and vascular lesions. The objective is to engineer a CNN model with robust diagnostic performance across a diverse lesion dataset, ensuring accurate identification and categorization of dermatological conditions. © 2024 IEEE.

关键词： Convolutional neural networks

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A New Tree Structure for Local Diagnosis

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Journal of Information science and Engineering 2024年第2期40卷 231-244页

作者： Chen, Meirun Li, Xiao-Yan Lin, Cheng-Kuan Pai, Kung-Jui School of Mathematics and Statistics Xiamen University of Technology Xiamen361024 China College of Computer and Data Science Fuzhou University Fuzhou350108 China Department of Computer Science National Yang Ming Chiao Tung University Hsinchu30010 Taiwan Undergraduate Degree Program of Systems Engineering and Technology National Yang Ming Chiao Tung University Hsinchu30010 Taiwan Computer Science and Information Engineering Chung Cheng Institute of Technology National Defense University Taoyuan30010 Taiwan Department of Industrial Engineering and Management Ming Chi University of Technology New Taipei City243303 Taiwan

Diagnosability is an important parameter to measure the fault tolerance of a multiprocessor system. If we only care about the state of a node, instead of doing the global diagnosis, Hsu and Tan proposed the idea of local diagnosis. Chiang and Tan provided an extended star structure to diagnose a node under comparison model. In this work, we evaluate the local diagnosability better by proposing a tree structure around this node. We provide the corresponding algorithm to diagnose the node. Simulation results are presented for different failure probability of a node in the tree and different percentage of faulty nodes in the tree, showing the performance of our algorithm. © 2024 Institute of Information science. All rights reserved.

关键词： comparison model diagnosis algorithm fault diagnosis local diagnosability tree

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E-Government Interoperability: Provincial-Level Architecture Model to Enable Fast Healthcare Interoperability Resources (FHIR) 9

E-Government Interoperability: Provincial-Level Architecture...

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9th International Conference on Information Management and Technology, ICIMTech 2024

作者： Wijayanti, Diana Urbaya, Satriawansyah Sitompul, Taufiq Adrian, Verry BINUS Graduate Program Bina Nusantara University Department of Information Systems Jakarta11480 Indonesia Program USAID Indonesia Jakarta12930 Indonesia University of Oslo Department of Informatics Oslo0316 Norway Binus Graduate Program - Doctor Computer Science Bina Nusantara University Computer Science Department Jakarta11480 Indonesia Jakarta Provincial Health Office Center of Data and Information Technology Jakarta10160 Indonesia

ISBN: (纸本)9798350390025

The process of using ICT to provide services to the public is known as the Indonesian e-Government system, or Sistem Pemerintahan Berbasis Elektronik (SPBE). The e-Government initiative in Jakarta Provincial Health Office involves enhancing collaboration among public health entities for efficient data exchange and streamlined processes, especially between the Provincial and District Health Offices, public hospitals, government clinics, and primary health care centers (Puskesmas). Achieving interoperability requires standardized protocols and a well-defined architectural model to integrate data seamlessly. This study presents a provincial-level architectural model focused on improving electronic health records interoperability, aiming to promote the adoption of the national Fast Healthcare Interoperability Resources (FHIR) health information exchange platform and enhance the integrity of health data in Jakarta. The study methodology involves conducting literature reviews, observations, and discussions with representatives from healthcare facilities to develop the e-Government architecture model and prototype of the infrastructure layer aiming to facilitate the interoperability of Electronic Health Records (EHRs) across 93 healthcare facilities, all of which are part of the SPBE users. © 2024 IEEE.

关键词： e-government

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