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2021 International Conference on data Analytics for Business and Industry, ICDABI 2021

作者： Mohammed, Abdulrahim Hewahi, Nabil College of Science University of Bahrain Big Data Science and Analytics Program Sakhir Bahrain College of Information Technology University of Bahrain Department of Computer Science Sakhir Bahrain

ISBN: (纸本)9781665416566

Pipeline networks are crucial for process industries transportation and business operation. These vital elements, however, are highly exposed to material degradation due to corrosion that seriously impedes operational profitability, reliability, and safety. Industries usually monitor pipeline corrosion rate by gauging pipe wall thickness. Predicting pipe wall thickness helps industries to identify locations with high corrosion rate at an early stage and take necessary actions. The aim of this research is to predict pipe wall thickness at different locations using different machine learning algorithms including Support Vector Machine (SVM), Random Forest (RF), k-Nearest Neighbor (KNN), fully connected Artificial Neural Network (ANN), and Long Short-Term Memory (LSTM). The data processed and analyzed in this study included six different process variables as well as pipe wall thickness at three different locations in a downstream oil and gas industry. The study findings demonstrated that LSTM with test Root Mean Squared Errors (RMSEs) of 0.019 mm, 0.015 mm, and 0.017 mm for the three selected locations, outperformed the other methods applied and successfully identified the pipe wall thickness pattern. © 2021 IEEE.

关键词： Long short-term memory

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An Integrated Framework for Team Formation and Winner Prediction in the FIRST Robotics Competition: Model, Algorithm, and Analysis 25

An Integrated Framework for Team Formation and Winner Predic...

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25th IEEE International Conferences on High Performance Computing and Communications, 9th International Conference on data science and Systems, 21st IEEE International Conference on Smart City and 9th IEEE International Conference on Dependability in Sensor, Cloud and Big data Systems and Applications, HPCC/DSS/SmartCity/DependSys 2023

作者： Galbiati, Federico Gran, Ranier X. Jacques, Brendan D. Mulhern, Sullivan J. Ngan, Chun-Kit Worcester Polytechnic Institute Department of Computer Science Worcester United States Worcester Polytechnic Institute Data Science Program Worcester United States

ISBN: (纸本)9798350330014

This research work aims to develop an analytical approach for optimizing team formation and predicting team performance in a competitive environment based on data on the competitors' skills prior to the team formation. There are several approaches in scientific literature to optimize and predict a team's performance. However, most studies employ fine-grained skill statistics of the individual members or constraints such as teams with a set group of members. Currently, no research tackles the highly constrained domain of the FIRST Robotics Competition. This research effort aims to fill this gap by providing an analytical method for optimizing and predicting team performance in a competitive environment while allowing these constraints and only using metrics on previous team performance, not on each individual member's performance. We apply our method to the drafting process of the FIRST Robotics competition, a domain in which the skills change year-over-year, team members change throughout the season, each match only has a superficial set of statistics, and alliance formation is key to competitive success. First, we develop a method that could extrapolate individual members' performance based on overall team performance. An alliance optimization algorithm is developed to optimize team formation and a deep neural network model is trained to predict the winning team, both using highly post-processed real-world data. Our method is able to successfully extract individual members' metrics from overall team statistics, form competitive teams, and predict the winning team with 84.08 % accuracy. © 2023 IEEE.

关键词： Predictive analytics

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data Mining and Bioinformatics Approaches to Elucidate Bacterial Communities in the Extreme Environment

Data Mining and Bioinformatics Approaches to Elucidate Bacte...

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2023 International Conference on Informatics, Multimedia, Cyber and Information Systems, ICIMCIS 2023

作者： Trinugroho, Joko Pebrianto Hidayat, Alam Ahmad Nirwantono, Rudi Asadi, Faisal Pardamean, Bens Bina Nusantara University Bioinformatics and Data Science Research Center Jakarta11480 Indonesia Bina Nusantara University School of Computer Science Bioinformatics and Data Science Research Center Mathematics Department Jakarta11480 Indonesia Bina Nusantara University Faculty of Engineering Bioinformatics and Data Science Research Center Biotechnology Department Jakarta11480 Indonesia Bina Nusantara University School of Computer Science Bioinformatics and Data Science Research Center Computer Science Department Jakarta11480 Indonesia Bina Nusantara University Binus Graduate Program Computer Science Computer Science Department Jakarta11480 Indonesia

ISBN: (纸本)9798350307306

Bacteria are microscopic organisms that can be found in many environments. They are abundant and have many roles in our life. Studying bacteria is essential so that we can identify the bacteria that are needed for many industrial applications. However, the main problem is that majority of the bacteria are unculturable, hampering the exploration of bacteria from different environments. Metagenomics approach which employs Next Generation Sequencing technology could help study bacteria by utilizing 16S rRNA marker gene. This study aims to demonstrate data mining and bioinformatics approaches to analyze 16S rRNA sequencing data. The raw sequencing data of 16S rRNA was collected from biological database. Then, the data were trimmed, denoised, and clustered to generate Amplicon Sequence Variants (ASVs). Diversity (alpha and beta) and taxonomic analyses were then conducted to elucidate the bacterial diversity and taxonomic profile of ASVs. The results of this work showed that Shannon and PD indices in China's hot spring were higher than Singapore and the USA. Furthermore, a significant difference was observed in the PD index. The unweighted UniFrac distance also showed there was a significant difference of the bacterial communities between the three locations. In addition, the taxonomic investigation unveiled prevalent bacterial groups in the ecosystem, namely Proteobacteria, Chloroflexi, Cyanobacteria, and Crenarchaeota. The research outcomes have the potential to serve as a foundational resource for subsequent bacterial metagenomic research, particularly the hot spring environment. © 2023 IEEE.

关键词： Bacteria

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data annotation system for intelligent energy conservator in smart building 3

Data annotation system for intelligent energy conservator in...

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3rd International Conference on Eco Engineering Development, ICEED 2019

作者： Pardamean, Bens Cenggoro, Tjeng Wawan Chandra, Bloomest Jansen Rahutomo, Reza Computer Science Department BINUS Graduate Program Master of Computer Science Program Bina Nusantara University Jakarta11480 Indonesia Computer Science Department School of Computer Science Bina Nusantara University Jakarta11480 Indonesia Computer Science Department College of Letters and Science University of Wisconsin MadisonWI53706 United States Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta11480 Indonesia

The concept of smart building includes the optimization of energy usage in a building. One of the possible solutions for this is to adaptively adjust appliances utilization according to activity level in the building. Thus, an intelligent activity estimation system needs to be developed. However, massive annotated dataset is necessary to train the system. Therefore, we propose a system that enables rapid data annotation to collect the massive dataset. With the proposed system, an image can be annotated within 4.8 seconds in average. © 2020 Published under licence by IOP Publishing Ltd.

关键词： Historic preservation

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Diffusion-Stego: Training-free diffusion generative steganography via message projection

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Information sciences 2025年 718卷

作者： Daegyu Kim Chaehun Shin Jooyoung Choi Dahuin Jung Sungroh Yoon Data Science and AI Laboratory Electrical and Computer Engineering Seoul National University Seoul 08826 Republic of Korea School of Computer Science and Engineering Soongsil University Seoul 06978 Republic of Korea Interdisciplinary Program in Artificial Intelligence Seoul National University Seoul 08826 Republic of Korea AIIS ASRI INMC and ISRC Seoul National University Seoul 08826 Republic of Korea

Generative steganography is the process of hiding secret messages in generated images instead of cover images. Existing studies on generative steganography use GAN or Flow models to obtain high hiding message capacity and anti-detection ability over cover images. However, they create relatively unrealistic stego images because of the inherent limitations of generative models. We propose Diffusion-Stego, a generative steganography approach based on diffusion models that outperform other generative models in image generation. Diffusion-Stego projects secret messages into the latent noise of diffusion models and generates stego images with an iterative denoising process. Since the naive hiding of secret messages into noise boosts visual degradation and decreases extracted message accuracy, we introduce message projection, which hides messages into noise space while addressing these issues. We suggest three options for message projection to adjust the trade-off between extracted message accuracy, anti-detection ability, and image quality. Diffusion-Stego is a training-free approach, so we can apply it to pre-trained diffusion models that generate high-quality images, or even large-scale text-to-image models, such as Stable diffusion. Diffusion-Stego achieved a high capacity of messages as well as high quality that makes it challenging to distinguish from real images in the PNG format.

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Improving structure evaluation through automatic hierarchy expansion 20

Improving structure evaluation through automatic hierarchy e...

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20th International Society for Music Information Retrieval Conference, ISMIR 2019

作者： McFee, Brian Kinnaird, Katherine M. Music and Audio Research Lab Center for Data Science New York University United States Department of Computer Science Statistical and Data Sciences Program Smith College United States

ISBN: (纸本)9781732729919

Structural segmentation is the task of partitioning a recording into non-overlapping time intervals, and labeling each segment with an identifying marker such as A, B, or verse. Hierarchical structure annotation expands this idea to allow an annotator to segment a song with multiple levels of granularity. While there has been recent progress in developing evaluation criteria for comparing two hierarchical annotations of the same recording, the existing methods have known deficiencies when dealing with inexact label matchings and sequential label repetition. In this article, we investigate methods for automatically enhancing structural annotations by inferring (and expanding) hierarchical information from the segment labels. The proposed method complements existing techniques for comparing hierarchical structural annotations by coarsening or refining labels with variation markers to either collapse similarly labeled segments together, or separate identically labeled segments from each other. Using the multi-level structure annotations provided in the SALAMI dataset, we demonstrate that automatic hierarchy expansion allows structure comparison methods to more accurately assess similarity between annotations. © 2020 International Society for Music Information Retrieval. All rights reserved.

关键词： Coarsening

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AI-driven 3D Spatial Transcriptomics

arXiv

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arXiv 2025年

作者： Almagro-Pérez, Cristina Song, Andrew H. Weishaupt, Luca Kim, Ahrong Jaume, Guillaume Williamson, Drew F.K. Hemker, Konstantin Lu, Ming Y. Singh, Kritika Chen, Bowen Le, Long Phi Baras, Alexander S. Jiang, Sizun Bashashati, Ali Liu, Jonathan T.C. Mahmood, Faisal Department of Pathology Mass General Brigham Harvard Medical School BostonMA United States Cancer Program Broad Institute of Harvard and MIT CambridgeMA United States Data Science Program Dana-Farber Cancer Institute BostonMA United States Harvard-MIT Division of Health Sciences and Technology Massachusetts Institute of Technology CambridgeMA United States Department of Pathology Pusan National University Busan Korea Republic of Department of Pathology and Laboratory Medicine Emory University School of Medicine AtlantaGA United States Department of Computer Science & Technology University of Cambridge Cambridge United Kingdom Department of Electrical Engineering and Computer Science Massachusetts Institute of Technology CambridgeMA United States Rutgers Robert Wood Johnson Medical School New BrunswickNJ United States Department of Pathology Johns Hopkins Hospital BaltimoreMD United States Department of Biomedical Engineering Johns Hopkins Hospital BaltimoreMD United States Broad Institute of Harvard and MIT CambridgeMA United States Center for Virology and Vaccine Research Beth Israel Deaconess Medical Center Harvard Medical School BostonMA United States Department of Pathology Dana Farber Cancer Institute BostonMA United States Department of Pathology and Laboratory Medicine University of British Columbia VancouverBC Canada School of Biomedical Engineering University of British Columbia VancouverBC Canada Department of Mechanical Engineering Bioengineering Laboratory Medicine & Pathology University of Washington SeattleWA United States Harvard Data Science Initiative Harvard University CambridgeMA United States

A comprehensive three-dimensional (3D) map of tissue architecture and gene expression is crucial for illuminating the complexity and heterogeneity of tissues across diverse biomedical applications1. However, most spatial transcriptomics (ST) approaches remain limited to two-dimensional (2D) sections of tissue2–4. Although current 3D ST methods hold promise, they typically require extensive tissue sectioning, are complex, are not compatible with non-destructive 3D tissue imaging technologies, and often lack scalability5–8. Here, we present VOlumetrically Resolved Transcriptomics EXpression (VORTEX), an AI framework that leverages 3D tissue morphology and minimal 2D ST to predict volumetric 3D ST. By pretraining on diverse 3D morphology–transcriptomic pairs from heterogeneous tissue samples and then fine-tuning on minimal 2D ST data from a specific volume of interest, VORTEX learns both generic tissue-related and sample-specific morphological correlates of gene expression. This approach enables dense, high-throughput, and fast 3D ST, scaling seamlessly to large tissue volumes far beyond the reach of existing 3D ST techniques. By offering a cost-effective and minimally destructive route to obtaining volumetric molecular insights, we anticipate that VORTEX will accelerate biomarker discovery and our understanding of morphomolecular associations and cell states in complex tissues. Interactive 3D ST volumes can be viewed at https://***/. © 2025, CC BY-NC-ND.

关键词： Vortex flow

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Indonesian Agricultural-crops Classification Using Transfer Learning Model 8

Indonesian Agricultural-crops Classification Using Transfer ...

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8th International Conference on computer science and Computational Intelligence, ICCSCI 2023

作者： Isnan, Mahmud Hidayat, Alam Ahmad Pardamean, Bens Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta11480 Indonesia Department of Mathematics School of Computer Science Bina Nusantara University Jakarta11480 Indonesia Computer Science Department BINUS Graduate Program - Master of Computer Science Program Bina Nusantara University Jakarta11480 Indonesia

Classification of Indonesian crops is a critical task in developing farming and getting more understanding of agriculture. However, there is no clear task in classifying types of crops in Indonesia. Transfer learning has been used successfully in a variety of image classification applications. Thus, in this paper, we collected images of Indonesian crops from the internet randomly and proposed a classification by using transfer learning of deep learning with four pre-trained models: EffficientNetB0, ResNet18, VGG19, and AlexNet. In the experiment, augmentation techniques such as random horizontal flip, random vertical flip, and random affine were utilized to prevent the network from overfitting. The result found that EfficientNet-B0 outperformed other models with an accuracy of 82.55. Then, the model struggled to distinguish between crops in the same family. According to the results, although transfer learning can work well to classify images of Indonesian agricultural crops, some improvements are still required to address existing issues. © 2023 The Authors. Published by Elsevier B.V.

关键词： Agriculture Classification Crop Deep Learning Transfer learning

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Knowledge Graph-Enhanced Semantic Cache for Low-Latency and Cost-Effective Inference in Large Language Models 9

Knowledge Graph-Enhanced Semantic Cache for Low-Latency and ...

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9th International Conference on Information Management and Technology, ICIMTech 2024

作者： Dominic, Nicholas Pardamean, Bens Bina Nusantara University Bioinformatics & Data Science Research Center Jakarta11480 Indonesia BINUS Graduate Program - Master of Computer Science Bina Nusantara University Computer Science Department Jakarta11480 Indonesia

ISBN: (纸本)9798350390025

In organizational knowledge management, Large Language Model (LLM) caches act as a semantic repository gathered from previous LLM responses. Due to intensive calls from multiple users, LLM may suffer from high inference latency. While there are many prior available approaches to solve this problem, most of them are inherently complex. This paper introduced a Knowledge Graph-enhanced Semantic Cache mechanism as an alternative, lightweight technique to boost retrieval for similar prompts. The latest state-of-the-art open-source LLM, named Google's Gemma-2B-it, was used to generate sample prompts and responses as a draft, while a knowledge graph (KG) was built from Wikipedia sentences. To create embeddings of prompts and KG, all-MiniLM-L6-v2 from SentenceTransformer was used. This new cache system resulted in up to 28% improvement over a standard model. In particular, reinforcement with KG cache embeddings yielded more than 85% semantic cache accuracy. To map the next trajectory of this pilot study, an overview of the extended framework for LLM knowledge management was also presented in this paper. The framework includes the new KG- enhanced cache system equipped with scalable security and fallback mechanisms that can promote green technology through substantial improvements in latency, throughput, and overall LLM costs. © 2024 IEEE.

关键词： Knowledge graph

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Web Information System Design for Fast Protein Post-Translational Modification Site Prediction 7

Web Information System Design for Fast Protein Post-Translat...

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7th International Conference on Information Management and Technology, ICIMTech 2022

作者： Elwirehardja, Gregorius Natanael Dominic, Nicholas Pardamean, Bens BINUS Graduate Program - Master of Computer Science Bina Nusantara University Computer Science Department Jakarta11480 Indonesia Research Center Bina Nusantara University Bioinformatics and Data Science Jakarta11480 Indonesia

ISBN: (数字)9781665450904

ISBN: (纸本)9781665450904

In the field of bioinformatics, the protein Post-Translational Modification (PTM) site prediction has been widely studied and Web Information Systems (WIS) has been deployed by researchers for this task. Through a literature review and benchmarking process, we identified the requirements which included quick predictions, efficient memory usage, and input validations. However, no detailed designs have been proposed so far, which may have contributed to some requirements not being implemented in some of the websites. Therefore, we propose a detailed WIS conceptual design, which can be used for predicting the sites of multiple PTM types, equipped with a validation algorithm and compared the usage of various string searching algorithms as well as file storage formats. Experiment results showed that the linear search algorithm is the fastest for this task and storing the protein data in npz format when performing multi-PTMs site prediction can assist in reducing memory usage. The proposed design can be implemented into user-friendly web tools that are both efficient in speed and memory usage in future studies. © 2022 IEEE.

关键词： Forecasting

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