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arXiv 2023年

作者： Karnam, Naveen Kumar Turlapaty, Anish Chand Dubey, Shiv Ram Gokaraju, Balakrishna The Biosignal Analysis Lab The Indian Institute of Information Technology A.P. Sri City India The Computer Vision and Biometrics Laboratory Indian Institute of Information Technology U.P. Allahabad Prayagraj211015 India Department of Computational Data Science An Engineering North Carolina A and T State University GreensboroNC United States

In this paper, we present electromyography analysis of human activity - database 1 (EMAHA-DB1), a novel dataset of multi-channel surface electromyography (sEMG) signals to evaluate the activities of daily living (ADL). The dataset is acquired from 25 able-bodied subjects while performing 22 activities categorised according to functional arm activity behavioral system (FAABOS) (3 - full hand gestures, 6 - open/close office draw, 8 - grasping and holding of small office objects, 2 - flexion and extension of finger movements, 2 - writing and 1 - rest). The sEMG data is measured by a set of five Noraxon Ultium wireless sEMG sensors with Ag/Agcl electrodes placed on a human hand. The dataset is analyzed for hand activity recognition classification performance. The classification is performed using four state-of-the-art machine learning classifiers, including Random Forest (RF), Fine K-Nearest Neighbour (KNN), Ensemble KNN (sKNN) and Support Vector Machine (SVM) with seven combinations of time domain and frequency domain feature sets. The state-of-the-art classification accuracy on five FAABOS categories is 83.21% by using the SVM classifier with the third order polynomial kernel using energy feature and auto regressive feature set ensemble. The classification accuracy on 22 class hand activities is 75.39% by the same SVM classifier with the log moments in frequency domain (LMF) feature, modified LMF, time domain statistical (TDS) feature, spectral band powers (SBP), channel cross correlation and local binary patterns (LBP) set ensemble. The analysis depicts the technical challenges addressed by the dataset. The developed dataset can be used as a benchmark for various classification methods as well as for sEMG signal analysis corresponding to ADL and for the development of prosthetics and other wearable robotics. Copyright © 2023, The Authors. All rights reserved.

关键词： Local binary pattern

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Driving force of atomic ordering in Fe1−xPtx, investigated by density functional theory and machine-learning interatomic potentials Monte Carlo simulations

arXiv

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arXiv 2024年

作者： Tsuyama, Tomoyuki Kaneshita, Takeshi Matsui, Akira Ochiai, Kohei Tanaka, Hiroaki Kondo, Ryohei Fukushima, Takayuki Ohashi, Haruhisa Hashimoto, Atsushi Okuno, Yoshishige Zhu, Jian-Gang Resonac Corporation Research Center for Computational Science and Informatics 8 Ebisu-cho Kanagawa-ku Kanagawa. Yokohama221-8517 Japan Resonac Hard Disk Corporation Research & development Center 5-1 Yawatakaigan-dori Ichihara Chiba290-0067 Japan Data Storage Systems Center Carnegie Mellon University PittsburghPA15213 United States Electrical and Computer Engineering Department Carnegie Mellon University PittsburghPA15213 United States Materials Science and Engineering Department Carnegie Mellon University PittsburghPA15213 United States

We report the mechanisms of atomic ordering in Fe1−xPtx alloys using density functional theory (DFT) and machine-learning interatomic potential Monte Carlo (MLIP-MC) simulations. We clarified that the formation enthalpy of the ordered phase was significantly enhanced by spin polarization compared to that of the disordered phase. Analysis of the density of states indicated that coherence in local potentials in the ordered phase brings energy gain over the disordered phases, when spin is considered. MLIP-MC simulations were performed to investigate the phase transition of atomic ordering at a finite temperature. The model trained using the DFT dataset with spin polarization exhibited quantitatively good agreement with previous experiments and thermodynamic calculations across a wide range of Pt compositions, whereas the model without spin significantly underestimated the transition temperature. Through this study, we clarified that spin polarization is essential for accurately accounting for the ordered phase in Fe-Pt bimetallic alloys, even above the Curie temperature, possibly because of the remaining short-range spin order. © 2024, CC BY-SA.

关键词： Spin polarization

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Global Performance Disparities Between English-Language Accents in Automatic Speech Recognition

arXiv

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arXiv 2022年

作者： Dichristofano, Alex Shuster, Henry Chandra, Shefali Patwari, Neal Division of Computational & Data Sciences Washington University 1 Brookings Drive St. LouisMO63130 United States Department of Computer Science & Engineering Washington University 1 Brookings Drive St. LouisMO63130 United States Department of Women Gender and Sexuality Studies Department of History Washington University 1 Brookings Drive St. LouisMO63130 United States Department of Electrical & Systems Engineering Department of Computer Science & Engineering Division of Computational & Data Sciences Washington University 1 Brookings Drive St. LouisMO63130 United States

Past research has identified discriminatory automatic speech recognition (ASR) performance as a function of the racial group and nationality of the speaker. In this paper, we expand the discussion beyond bias as a function of the individual national origin of the speaker to look for bias as a function of the geopolitical orientation of their nation of origin. We audit some of the most popular English language ASR services using a large and global data set of speech from The Speech Accent Archive, which includes over 2,700 speakers of English born in 171 different countries. We show that, even when controlling for multiple linguistic covariates, ASR service performance has a statistically significant relationship to the political alignment of the speaker’s birth country with respect to the United States’ geopolitical power. This holds for all ASR services tested. We discuss this bias in the context of the historical use of language to maintain global and political power. © 2022, CC BY-NC-SA.

关键词： Speech recognition

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Epidemic dynamics on metapopulation networks with node2vec mobility

arXiv

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arXiv 2021年

作者： Meng, Lingqi Masuda, Naoki Department of Mathematics State University of New York BuffaloNY14260-2900 United States Computational and Data-Enabled Science and Engineering Program State University of New York BuffaloNY14260-5030 United States Faculty of Science and Engineering Waseda University Tokyo169-8555 Japan

Metapopulation models have been a powerful tool for both theorizing and simulating epidemic dynamics. In a metapopulation model, one considers a network composed of subpopulations and their pairwise connections, and individuals are assumed to migrate from one subpopulation to another obeying a given mobility rule. While how different mobility rules affect epidemic dynamics in metapopulation models has been studied, there have been relatively few efforts on comparison of the effects of simple (i.e., unbiased) random walks and more complex mobility rules. Here we study a susceptible-infectious-susceptible (SIS) dynamics in a metapopulation model, in which individuals obey a parametric second-order random-walk mobility rule called the node2vec. We map the second-order mobility rule of the node2vec to a first-order random walk in a network whose each node is a directed edge connecting a pair of subpopulations and then derive the epidemic threshold. For various networks, we find that the epidemic threshold is large (therefore, epidemic spreading tends to be suppressed) when the individuals infrequently backtrack or infrequently visit the common neighbors of the currently visited and the last visited subpopulations than when the individuals obey the simple random walk. The amount of change in the epidemic threshold induced by the node2vec mobility is in general not as large as, but is sometimes comparable with, the one induced by the change in the diffusion rate for individuals. Copyright © 2021, The Authors. All rights reserved.

关键词： Random processes

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Machine Knowledge and Human Cognition

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Big data Mining and Analytics 2020年第4期3卷 292-299页

作者： Fashen Li Lian Li Jianping Yin Liang Huang Qingguo Zhou Ning An Yong Zhang Li Liu Jialin Zhang Kun Kuang Lei Yang Zhixi Wu Lianchun Yu the School of Physical Science and Technology Lanzhou UniversityLanzhou 730000China the School of Computer Science and Information Engineering Hefei University of TechnologyHefei 230009China the School of Cyber Science and Engineering Dongguan University of TechnologyDongguan 523808China the Institute of Computational Physics and Complex Systems Lanzhou UniversityLanzhou 730000China the School of Information Science and Engineering Lanzhou UniversityLanzhou 730000China the School of Computer Science and Information Engineering Hefei University of TechnologyHefei 230601China the Department of Physics Xiamen UniversityXiamen 361005China the School of Big Data&Software Engineering Chongqing UniversityChongqing 400044China the Institute of Computing Technology Chinese Academy of SciencesBeijing 100190China the College of Computer Science and Technology Zhejiang UniversityHangzhou 310000China the Institute ofModern Physics Chinese Academy of SciencesLanzhou 730000China

Intelligent machines are knowledge systems with unique knowledge structure and *** this paper,we discuss issues including the characteristics and forms of machine knowledge,the relationship between knowledge and human cognition,and the approach to acquire machine *** issues are of great significance to the development of artificial intelligence.

关键词： intelligent machine machine knowledge human cognition knowledge interpretation principle of functional similarity Probable Approximative Correction(PAC)model

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MOST DISCRIMINATIVE STIMULI FOR FUNCTIONAL CELL TYPE CLUSTERING 12

MOST DISCRIMINATIVE STIMULI FOR FUNCTIONAL CELL TYPE CLUSTER...

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12th International Conference on Learning Representations, ICLR 2024

作者： Burg, Max F. Zenkel, Thomas Vystrčilová, Michaela Oesterle, Jonathan Höfling, Larissa Willeke, Konstantin F. Lause, Jan Müller, Sarah Fahey, Paul G. Ding, Zhiwei Restivo, Kelli Sridhar, Shashwat Gollisch, Tim Berens, Philipp Tolias, Andreas S. Euler, Thomas Bethge, Matthias Ecker, Alexander S. International Max Planck Research School for Intelligent Systems Tübingen Germany Institute of Computer Science and Campus Institute Data Science University of Göttingen Germany Tübingen AI Center University of Tübingen Germany Institute of Ophthalmic Research University of Tübingen Germany Centre for Integrative Neuroscience University of Tübingen Germany Institute for Bioinformatics and Medical Informatics Tübingen University Germany Hertie Institute for AI in Brain Health University of Tübingen Germany Department of Neuroscience Baylor College of Medicine HoustonTX United States Center for Neuroscience and Artificial Intelligence Baylor College of Medicine HoustonTX United States University Medical Center Göttingen Department of Ophthalmology Germany Bernstein Center for Computational Neuroscience Göttingen Germany University of Göttingen Germany Department of Electrical and Computer Engineering Rice University HoustonTX United States Max Planck Institute for Dynamics and Self-Organization Göttingen Germany

Identifying cell types and understanding their functional properties is crucial for unraveling the mechanisms underlying perception and cognition. In the retina, functional types can be identified by carefully selected stimuli, but this requires expert domain knowledge and biases the procedure towards previously known cell types. In the visual cortex, it is still unknown what functional types exist and how to identify them. Thus, for unbiased identification of the functional cell types in retina and visual cortex, new approaches are needed. Here we propose an optimization-based clustering approach using deep predictive models to obtain functional clusters of neurons using Most Discriminative Stimuli (MDS). Our approach alternates between stimulus optimization with cluster reassignment akin to an expectation-maximization algorithm. The algorithm recovers functional clusters in mouse retina, marmoset retina and macaque visual area V4. This demonstrates that our approach can successfully find discriminative stimuli across species, stages of the visual system and recording techniques. The resulting most discriminative stimuli can be used to assign functional cell types fast and on the fly, without the need to train complex predictive models or show a large natural scene dataset, paving the way for experiments that were previously limited by experimental time. Crucially, MDS are interpretable: they visualize the distinctive stimulus patterns that most unambiguously identify a specific type of neuron. © 2024 12th International Conference on Learning Representations, ICLR 2024. All rights reserved.

关键词： Maximum principle

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Study and Trend Prediction of Covid-19 cases in India using Deep Learning Techniques 1

Study and Trend Prediction of Covid-19 cases in India using ...

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1st International Conference on Mechatronics and Artificial Intelligence, ICMAI 2021

作者： Shrivastava, V.K. Kumar, Ajay Shrivastava, A. Tiwari, A. Thiru, K. Batra, R. Department of Big Data Analytics Adani Institute of Digital Technology Management Gujrat Gandhinagar382423 India Department of Mechanical Engineering SGT University Haryana Gurugram122505 India Department of Electronics and Tele Communication Engineering IIIT Odisha Bhubaneswar751003 India Department of Information Technology Madhav Institute of Technology and Science Gwalior474005 India United World School of Computational Intelligence Karnavati University Gujrat Gandhinagar383422 India Reenu Batra Department of Computer Science and Engineering SGT University Haryana Gurugram122505 India

The novel coronavirus or officially known as SARS-CoV 2 (Severe Acute Respiratory Syndrome Coronavirus 2) has caused a severe pandemic over the world affecting not only the economy of the countries but also the lifestyle of the people worldwide. As on 31.12.2020, Covid-19 (coronavirus disease) has infecting more than 10266674 people and causing about 148738 deaths in India. It has been seen through various statistics of various countries that the number of Covid-19 cases grows exponentially as the number of test increases then after some period, the rate of new cases decreases. In this research paper, researchers have created deep learning-based model to predict the curve of the new Covid-19 cases vs the total number of tests conducted in India. There is still lockdown in some part of the country while some states have partially relaxed the rules and some states totally lifted the lockdown. Predicting the number of new cases and their trend can help in deciding what is the optimal time to release the lockdown. It will also help in determining when the coronavirus will loosen its grip from India. © Published under licence by IOP Publishing Ltd.

关键词： Coronavirus

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Generative AI Enables Medical Image Segmentation in Ultra Low-data Regimes

arXiv

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arXiv 2024年

作者： Zhang, Li Jindal, Basu Alaa, Ahmed Weinreb, Robert Wilson, David Segal, Eran Zou, James Xie, Pengtao Department of Electrical and Computer Engineering University of California La Jolla San DiegoCA United States Bakar Computational Health Sciences Institute University of California San Francisco San FranciscoCA United States Department of Electrical Engineering and Computer Sciences University of California Berkeley BerkeleyCA United States Hamilton Glaucoma Center Shiley Eye Institute Viterbi Family Department of Ophthalmology University of California La Jolla San DiegoCA United States Division of Pulmonary Allergy and Critical Care Medicine Department of Medicine University of Pittsburgh PittsburghPA United States Department of Computer Science and Applied Mathematics Weizmann Institute of Science Rehovot Israel Department of Molecular Cell Biology Weizmann Institute of Science Rehovot Israel Department of Biomedical Data Science Stanford University School of Medicine StanfordCA United States Department of Computer Science Stanford University StanfordCA United States Department of Medicine University of California La Jolla San DiegoCA United States

Semantic segmentation of medical images is pivotal in applications like disease diagnosis and treatment planning. While deep learning has excelled in automating this task, a major hurdle is the need for numerous annotated segmentation masks, which are resource-intensive to produce due to the required expertise and time. This scenario often leads to ultra low-data regimes, where annotated images are extremely limited, posing significant challenges for the generalization of conventional deep learning methods on test images. To address this, we introduce a generative deep learning framework, which uniquely generates high-quality paired segmentation masks and medical images, serving as auxiliary data for training robust models in data-scarce environments. Unlike traditional generative models that treat data generation and segmentation model training as separate processes, our method employs multi-level optimization for end-to-end data generation. This approach allows segmentation performance to directly influence the data generation process, ensuring that the generated data is specifically tailored to enhance the performance of the segmentation model. Our method demonstrated strong generalization performance across 9 diverse medical image segmentation tasks and on 16 datasets, in ultra-low data regimes, spanning various diseases, organs, and imaging modalities. When applied to various segmentation models, it achieved performance improvements of 10-20% (absolute), in both same-domain and out-of-domain scenarios. Notably, it requires 8 to 20 times less training data than existing methods to achieve comparable results. This advancement significantly improves the feasibility and cost-effectiveness of applying deep learning in medical imaging, particularly in scenarios with limited data availability. Copyright © 2024, The Authors. All rights reserved.

关键词： Semantic Segmentation

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Accurately predicting anticancer peptide using an ensemble of heterogeneously trained classifiers

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Informatics in Medicine Unlocked 2023年 42卷

作者： Azim, Sayed Mehedi Sabab, Noor Hossain Nuri Noshadi, Iman Alinejad-Rokny, Hamid Sharma, Alok Shatabda, Swakkhar Dehzangi, Iman Center for Computational and Integrative Biology Rutgers University Camden 08102 NJ United States Department of Computer Science and Engineering United International University Plot 2 United City Madani Avenue BaddaDhaka 1212 Bangladesh Department of Bioengineering University of California Riverside 92507 CA United States BioMedical Machine Learning Lab The Graduate School of Biomedical Engineering The University of New South Wales (UNSW Sydney) Sydney NSW 2052 Australia UNSW Data Science Hub UNSW Sydney Sydney NSW 2052 Australia Health Data Analytics Program AI-enabled Processes Research Centre Macquarie University Sydney 2109 Australia Institute for Integrated and Intelligent Systems Griffith University Brisbane Australia Laboratory for Medical Science Mathematics RIKEN Center for Integrative Medical Sciences Yokohama 230-0045 Japan Department of Computer Science Rutgers University Camden 08102 NJ United States

The use of therapeutic peptides for the treatment of cancer has received tremendous attention in recent years. Anticancer peptides (ACPs) are considered new anticancer drugs which have several advantages over chemistry-based drugs including high specificity, strong tumor penetration capacity, and low toxicity level for normal cells. Due to the rise of experimentally verified bioactive peptides, several in silico approaches became imperative for the investigation of the characteristics of ACPs. In this paper, we proposed a new machine learning tool named iACP-RF that uses a combination of several sequence-based features and an ensemble of three heterogeneously trained Random Forest classifiers to accurately predict anticancer peptides. Experimental results show that our proposed model achieves an accuracy of 75.9% which outperforms other state-of-the-art methods by a significant margin. We also achieve 0.52, 75.6%, and 76.2% in terms of Matthews Correlation Coefficient (MCC), Sensitivity, and Specificity, respectively. iACP-RF as a standalone tool and its source code are publicly available at: https://***/MLBC-lab/iACP-RF. © 2023 The Authors

关键词： Anticancer peptides Ensemble learning Feature extraction Heterogeneous classifiers Machine learning Random Forest

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Disk2Planet: A Robust and Automated Machine Learning Tool for Parameter Inference in Disk-Planet Systems

arXiv

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arXiv 2024年

作者： Mao, Shunyuan Dong, Ruobing Yi, Kwang Moo Lu, Lu Wang, Sifan Perdikaris, Paris Department of Physics and Astronomy University of Victoria VictoriaBCV8P 5C2 Canada Kavli Institute for Astronomy and Astrophysics Peking University Beijing100871 China Department of Computer Science University of British Columbia VancouverBCV6T 1Z4 Canada Department of Statistics and Data Science Yale University New HavenCT06511 United States Graduate Group in Applied Mathematics and Computational Science University of Pennsylvania PhiladelphiaPA19104 United States Institute for Foundations of Data Science Yale University New HavenCT06520 United States Department of Mechanical Engineering and Applied Mechanics University of Pennsylvania PhiladelphiaPA19104 United States

We introduce Disk2Planet, a machine learning-based tool to infer key parameters in disk-planet systems from observed protoplanetary disk structures. Disk2Planet takes as input the disk structures in the form of two-dimensional density and velocity maps, and outputs disk and planet properties, that is, the Shakura-Sunyaev viscosity, the disk aspect ratio, the planet-star mass ratio, and the planet's radius and azimuth. We integrate the Covariance Matrix Adaptation Evolution Strategy (CMA-ES), an evolutionary algorithm tailored for complex optimization problems, and the Protoplanetary Disk Operator Network (PPDONet), a neural network designed to predict solutions of disk-planet interactions. Our tool is fully automated and can retrieve parameters in one system in three minutes on an Nvidia A100 graphics processing unit. We empirically demonstrate that our tool achieves percent-level or higher accuracy, and is able to handle missing data and unknown levels of noise. Copyright © 2024, The Authors. All rights reserved.

关键词： Open source software

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