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Drug-Target Interactions Prediction Based on Signed Heterogeneous Graph Neural Networks

Chinese Journal of Electronics 2024年第1期33卷 231-244页

作者： Ming CHEN Yajian JIANG Xiujuan LEI Yi PAN Chunyan JI Wei JIANG College of Information Science and Engineering Hunan Normal University School of Computer Science Shaanxi Normal University Faculty of Computer Science and Control Engineering Shenzhen Institute of Advanced TechnologyChinese Academy of Sciences Computer Science Department BNU-HKBU United International College

Drug-target interactions(DTIs) prediction plays an important role in the process of drug *** computational methods treat it as a binary prediction problem, determining whether there are connections between drugs and targets while ignoring relational types information. Considering the positive or negative effects of DTIs will facilitate the study on comprehensive mechanisms of multiple drugs on a common target, in this work, we model DTIs on signed heterogeneous networks, through categorizing interaction patterns of DTIs and additionally extracting interactions within drug pairs and target protein pairs. We propose signed heterogeneous graph neural networks(SHGNNs), further put forward an end-to-end framework for signed DTIs prediction, called SHGNN-DTI,which not only adapts to signed bipartite networks, but also could naturally incorporate auxiliary information from drug-drug interactions(DDIs) and protein-protein interactions(PPIs). For the framework, we solve the message passing and aggregation problem on signed DTI networks, and consider different training modes on the whole networks consisting of DTIs, DDIs and PPIs. Experiments are conducted on two datasets extracted from Drug Bank and related databases, under different settings of initial inputs, embedding dimensions and training modes. The prediction results show excellent performance in terms of metric indicators, and the feasibility is further verified by the case study with two drugs on breast cancer.

关键词： Drug-target interactions Signed heterogeneous network Link sign prediction Graph neural networks

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Pentago SnW:An Improved Spray and Wait Protocol for Delay Tolerant Wireless Sensor Networks

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China Communications 2025年第3期22卷 104-114页

作者： Idris Afzal Shah Mushtaq Ahmed Raghavendra Singh Department of Computer Science and Engineering Malaviya National Institute of TechnologyJaipur302017India

Delay tolerant wireless sensor networks(DTWSN)is a class of wireless network that finds its deployment in those application scenarios which demand for high packet delivery ratio while maintaining minimal overhead in order to prolong network lifetime;owing to resource-constrained nature of *** fundamental requirement of any network is routing a packet from its source to *** of a routing algorithm depends on the number of network parameters utilized by that routing *** the recent years,various routing protocol has been developed for the delay tolerant networks(DTN).A routing protocol known as spray and wait(SnW)is one of the most widely used routing algorithms for *** this paper,we study the SnW routing protocol and propose a modified version of it referred to as Pentago SnW which is based on pentagonal number *** to binary SnW shows promising results through simulation using real-life scenarios of cars and pedestrians randomly moving on a map.

关键词： binary SnW delay tolerant network Pentago SnW spray and wait routing

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Nonparametric Statistical Feature Scaling Based Quadratic Regressive Convolution Deep Neural Network for Software Fault Prediction

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computers, Materials & Continua 2024年第3期78卷 3469-3487页

作者： Sureka Sivavelu Venkatesh Palanisamy School of Computer Science Engineering and Information Systems Vellore Institute of TechnologyVellore632014India

The development of defect prediction plays a significant role in improving software quality. Such predictions are used to identify defective modules before the testing and to minimize the time and cost. The software with defects negatively impacts operational costs and finally affects customer satisfaction. Numerous approaches exist to predict software defects. However, the timely and accurate software bugs are the major challenging issues. To improve the timely and accurate software defect prediction, a novel technique called Nonparametric Statistical feature scaled QuAdratic regressive convolution Deep nEural Network (SQADEN) is introduced. The proposed SQADEN technique mainly includes two major processes namely metric or feature selection and classification. First, the SQADEN uses the nonparametric statistical Torgerson–Gower scaling technique for identifying the relevant software metrics by measuring the similarity using the dice coefficient. The feature selection process is used to minimize the time complexity of software fault prediction. With the selected metrics, software fault perdition with the help of the Quadratic Censored regressive convolution deep neural network-based classification. The deep learning classifier analyzes the training and testing samples using the contingency correlation coefficient. The softstep activation function is used to provide the final fault prediction results. To minimize the error, the Nelder–Mead method is applied to solve non-linear least-squares problems. Finally, accurate classification results with a minimum error are obtained at the output layer. Experimental evaluation is carried out with different quantitative metrics such as accuracy, precision, recall, F-measure, and time complexity. The analyzed results demonstrate the superior performance of our proposed SQADEN technique with maximum accuracy, sensitivity and specificity by 3%, 3%, 2% and 3% and minimum time and space by 13% and 15% when compared with the two sta

关键词： Software defect prediction feature selection nonparametric statistical Torgerson-Gower scaling technique quadratic censored regressive convolution deep neural network softstep activation function nelder-mead method

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A Software Defect Prediction Method Using a Multivariate Heterogeneous Hybrid Deep Learning Algorithm

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computers, Materials & Continua 2025年第2期82卷 3251-3279页

作者： Qi Fei Haojun Hu Guisheng Yin Zhian Sun College of Computer Science and Technology Harbin Engineering UniversityHarbin150001China Information Technology Research Department Jiangsu Automation Research InstituteLianyungang222062China School of Computer Science and Technology Harbin Institute of TechnologyShenzhen518055China

Software defect prediction plays a critical role in software development and quality assurance processes. Effective defect prediction enables testers to accurately prioritize testing efforts and enhance defect detection efficiency. Additionally, this technology provides developers with a means to quickly identify errors, thereby improving software robustness and overall quality. However, current research in software defect prediction often faces challenges, such as relying on a single data source or failing to adequately account for the characteristics of multiple coexisting data sources. This approach may overlook the differences and potential value of various data sources, affecting the accuracy and generalization performance of prediction results. To address this issue, this study proposes a multivariate heterogeneous hybrid deep learning algorithm for defect prediction (DP-MHHDL). Initially, Abstract Syntax Tree (AST), Code Dependency Network (CDN), and code static quality metrics are extracted from source code files and used as inputs to ensure data diversity. Subsequently, for the three types of heterogeneous data, the study employs a graph convolutional network optimization model based on adjacency and spatial topologies, a Convolutional Neural Network-Bidirectional Long Short-Term Memory (CNN-BiLSTM) hybrid neural network model, and a TabNet model to extract data features. These features are then concatenated and processed through a fully connected neural network for defect prediction. Finally, the proposed framework is evaluated using ten promise defect repository projects, and performance is assessed with three metrics: F1, Area under the curve (AUC), and Matthews correlation coefficient (MCC). The experimental results demonstrate that the proposed algorithm outperforms existing methods, offering a novel solution for software defect prediction.

关键词： Software defect prediction multiple heterogeneous data graph convolutional network models based on adjacency and spatial topologies CNN-BiLSTM TabNet

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SMART LAVATORY SOLUTION: INTEGRATING IOT AND DEEP LEARNING MODELS FOR ENHANCED HYGIENE

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Scalable Computing 2025年第3期26卷 1057-1070页

作者： Patel, Jigna Shah, Aeshwi Rushali, Chaudhari Patel, Jitali Ukani, Vijay Department of Computer Science and Engineering Institute of Technology Nirma University Gujarat Ahmedabad India

In the current era of smart technology, integrating the Internet of Things (IoT) with Artificial Intelligence has revolutionized several fields, including public health and sanitation. The smart lavatory solution proposed in this paper improves hygiene standards using deep learning models and IoT system. The proposed system collect real-time data from deployed sensors to monitor and assess hygiene conditions regularly. Proposed model consists of four consequent phases as hardware implementation, data preprocessing, application and user interface modules. Rasberry Pi based sensor integration at hardware layer, normalization based techniques at data preprocessing layer, LSTM and GRU based deep learning model at application development layer and mobile notification to the cleaning staff at user interface layer ensure efficiently cleaning and monitoring of lavatory systems. Prior to assessing the proposed model’s testing accuracy experiments on the activation functions, optimizer, learning rate, and number of epochs were selected to choose the best to prevent overfitting or underfitting problems. With an accuracy of 98.61%, the proposed system performs better than the conventional approaches. © 2025 SCPE.

关键词： Deep learning

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Analyzing Hierarchical Relationships and Quality of Embedding in Latent Space

IEEE Transactions on Artificial Intelligence

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IEEE Transactions on Artificial Intelligence 2025年第4期6卷 843-858页

作者： Chatterjee, Ankita Mukherjee, Jayanta Das, Partha Pratim Indian Institute of Technology Kharagpur Department of Computer Science and Engineering Kharagpur721302 India

Existing learning models partition the generated representations using hyperplanes which form well defined groups of similar embeddings that is uniquely mapped to a particular class. However, in practical applications, the embedding space does not form distinct boundaries to segregate the class representations. There exists interaction among similar classes which cannot be visually determined in high-dimensional space. Moreover, the structure of the latent space remains obscure. As learned representations are frequently reused to reduce the inference time, it is important to analyse how semantically related classes interact among themselves in the latent space. Therefore, we propose a boundary estimation algorithm that minimises the inclusion of other classes in the embedding space to form groups of similar representations and compare the quality of these class embeddings for various models in an already encoded space. These groups are overlapping to denote ambiguous embeddings that cannot be mapped to a particular class with high confidence. The algorithm determines which representations to be included or discarded to form well defined regions, separating discriminating, ambiguous and rejected embeddings to depict a particular class. Later, we construct relation trees to evaluate the hierarchical relationships formed among the classes, and compare it with the WordNet ontology using phylogenetic tree comparison methods. © 2020 IEEE.

关键词： Embeddings

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Enhancing Multicriteria-Based Recommendations by Alleviating Scalability and Sparsity Issues Using Collaborative Denoising Autoencoder

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computers, Materials & Continua 2024年第2期78卷 2269-2286页

作者： S.Abinaya K.Uttej Kumar School of Computer Science&Engineering Vellore Institute of TechnologyChennaiTamilnadu600127India

A Recommender System(RS)is a crucial part of several firms,particularly those involved in *** conventional RS,a user may only offer a single rating for an item-that is insufficient to perceive consumer ***,businesses in industries like e-learning and tourism enable customers to rate a product using a variety of factors to comprehend customers’*** the other hand,the collaborative filtering(CF)algorithm utilizing AutoEncoder(AE)is seen to be effective in identifying user-interested ***,the cost of these computations increases nonlinearly as the number of items and users *** triumph over the issues,a novel expanded stacked autoencoder(ESAE)with Kernel Fuzzy C-Means Clustering(KFCM)technique is proposed with two *** the first phase of offline,the sparse multicriteria rating matrix is smoothened to a complete matrix by predicting the users’intact rating by the ESAE approach and users are clustered using the KFCM *** the next phase of online,the top-N recommendation prediction is made by the ESAE approach involving only the most similar user from multiple *** the ESAE_KFCM model upgrades the prediction accuracy of 98.2%in Top-N recommendation with a minimized recommendation generation *** experimental check on the Yahoo!Movies(YM)movie dataset and TripAdvisor(TA)travel dataset confirmed that the ESAE_KFCM model constantly outperforms conventional RS algorithms on a variety of assessment measures.

关键词： Recommender systems multicriteria rating collaborative filtering sparsity issue scalability issue stacked-autoencoder Kernel Fuzzy C-Means Clustering

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Network Security and Cryptography: Threats, Obstacles and Solutions-A Bibliometric Analysis

Recent Advances in Computer Science and Communications

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Recent Advances in computer science and Communications 2025年第2期18卷 83-101页

作者： Singh, Purushottam Dutta, Sandip Pranav, Prashant Department of Computer Science and Engineering Birla Institute of Technology Mesra Ranchi835215 India

Background: In the wake of escalating cyber threats and the indispensability of ro-bust network security mechanisms, it becomes crucial to understand the evolving landscape of cryptographic research. Recognizing the significant contributions and discerning emerging trends can guide future strategies and technological advancements. Our study endeavors to shed light on this through a bibliometric analysis of publications in the realms of Network Security and Cryptography. Method: To chronicle and synthesize the progression of research methodologies from their in-ception to the present day, we undertook a comprehensive Bibliometric Analysis of Network Security and Cryptography. Our data set was culled from the Clarivate Analytics Web of science Database, encompassing 3,897 papers, 603 sources, and 7,886 authors from across the globe. Results: Our analysis revealed a marked upsurge in cryptographic research since 1992, with China standing out as a dominant contributor in terms of publications. Notably, while 'security' and 'cryptography' emerged as recurrent research themes, there's an observable downtrend in international collaborations. Our study also highlights pivotal topics shaping the network security domain, offering insights into the trajectories of research source growth, structural variabil-ities in research relevance, and prospective intellectual and collaborative avenues as guided by authorship patterns. Conclusion: Cryptographic research is on an upward trajectory, both in volume and signifi-cance. However, the tapering of international collaborations and an evident need to concentrate on emergent challenges, such as data privacy and innovative network attacks, emerge as nota-ble insights. This bibliometric review serves as a compass, directing researchers and academi-cians towards areas warranting heightened attention, thereby informing the roadmap for future investigative pursuits. © 2025 Bentham science Publishers.

关键词： Cyber attacks

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IWM-LSTM encoder for abstractive text summarization

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Multimedia Tools and Applications 2025年第9期84卷 5883-5904页

作者： Gangundi, Ravindra Sridhar, Rajeswari Department of Computer Science and Engineering National Institute of Technology Tamilnadu Tiruchirappalli620015 India

Sequence-to-sequence models are fundamental building blocks for generating abstractive text summaries, which can produce precise and coherent summaries. Recently proposed, different text summarization models aimed to enhance summarization performance through the use of copying mechanisms, reinforcement learning, and multiple-level encoders. However, there has been limited research on improving the summarization output by modifying the structure of the long short-term memory (LSTM) cell. We introduced an improved version of LSTM called improved working memory LSTM (IWM-LSTM). IWM-LSTM removes the output gate and enhances the input and forget gates by incorporating cell state information into these gates. In our sequence-to-sequence model for text summarization, we replaced the LSTM encoder with a bi-directional IWM-LSTM, resulting in better summaries with minimal training time and less computational intensiveness. Additionally, we utilized Bidirectional encoder representations from transformers (BERT) embeddings to enhance the rouge score. The CNN/DailyMail dataset is used to train and test the model performance. The proposed model achieves better Recall-oriented understudy for gisting evaluation (ROUGE) scores than state-of-the-art models. © The Author(s), under exclusive licence to Springer science+Business Media, LLC, part of Springer Nature 2024.

关键词： Embeddings

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Attention enabled viewport selection with graph convolution for omnidirectional visual quality assessment

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Multimedia Tools and Applications 2025年第14期84卷 12925-12948页

作者： C, Nandhini M, Brindha Department of Computer Science and Engineering National Institute of Technology TamilNadu Tiruchirappalli620015 India

Omnidirectional images provide an immersive viewing experience in a Virtual Reality (VR) environment, surpassing the limitations of traditional 2D media beyond the conventional screen. This VR technology allows users to interact with visual information in an exciting and engaging manner. However, the storage and transmission requirements for 360-degree panoramic images are substantial, leading to the establishment of compression frameworks. Unfortunately, these frameworks introduce projection distortion and compression artifacts. With the rapid growth of VR applications, it becomes crucial to investigate the quality of the perceptible omnidirectional experience and evaluate the extent of visual degradation caused by compression. In this regard, viewport plays a significant role in omnidirectional image quality assessment (OIQA), as it directly affects the user’s perceived quality and overall viewing experience. Extracting viewports compatible with users viewing behavior plays a crucial role in OIQA. Different users may focus on different regions, and the model’s performance may be sensitive to the chosen viewport extraction strategy. Improper selection of viewports could lead to biased quality predictions. Instead of assessing the entire image, attention can be directed to areas that are more importance to the overall quality. Feature extraction is vital in OIQA as it plays a significant role in representing image content that aligns with human perception. Taking this into consideration, the proposed ATtention enabled VIewport Selection (ATVIS-OIQA) employs attention based view port selection with Vision Transformers(ViT) for feature extraction. Furthermore, the spatial relationship between the viewports is established using graph convolution, enabling intuitive prediction of the objective visual quality of omnidirectional images. The effectiveness of the proposed model is demonstrated by achieving state-of-the-art results on publicly available benchmark datasets, n

关键词： Convolution

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