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Network controllability of structural connectomes in the neonatal brain

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Nature Communications 2023年第1期14卷 5820页

作者： Sun, Huili Jiang, Rongtao Dai, Wei Dufford, Alexander J. Noble, Stephanie Spann, Marisa N. Gu, Shi Scheinost, Dustin Department of Biomedical Engineering Yale University New Haven 06520 CT United States Department of Radiology & Biomedical Imaging Yale School of Medicine New Haven 06510 CT United States Department of Biostatistics Yale School of Public Health New Haven 06510 CT United States Department of Psychiatry and Center for Mental Health Innovation Oregon Health & Science University Portland 97239 OR United States Department of Psychology Northeastern University Boston 02115 MA United States Department of Bioengineering Northeastern University Boston 02115 MA United States Center for Cognitive and Brain Health Northeastern University Boston United States Department of Psychiatry Vagelos College of Physicians and Surgeons Columbia University New York 10032 NY United States New York State Psychiatric Institute New York 10032 NY United States School of Computer Science and Engineering University of Electronic Science and Technology of China Chengdu China Shenzhen Institute for Advanced Study University of Electronic Science and Technology of China Shenzhen China Department of Statistics & Data Science Yale University New Haven 06520 CT United States Child Study Center Yale School of Medicine New Haven 06510 CT United States Wu Tsai Institute Yale University 100 College Street New Haven 06510 CT United States

White matter connectivity supports diverse cognitive demands by efficiently constraining dynamic brain activity. This efficiency can be inferred from network controllability, which represents the ease with which the brain moves between distinct mental states based on white matter connectivity. However, it remains unclear how brain networks support diverse functions at birth, a time of rapid changes in connectivity. Here, we investigate the development of network controllability during the perinatal period and the effect of preterm birth in 521 neonates. We provide evidence that elements of controllability are exhibited in the infant’s brain as early as the third trimester and develop rapidly across the perinatal period. Preterm birth disrupts the development of brain networks and altered the energy required to drive state transitions at different levels. In addition, controllability at birth is associated with cognitive ability at 18 months. Our results suggest network controllability develops rapidly during the perinatal period to support cognitive demands but could be altered by environmental impacts like preterm birth. © 2023, Springer Nature Limited.

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Modularity maximization as a flexible and generic framework for brain network exploratory analysis

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arXiv 2021年

作者： Esfahlani, Farnaz Zamani Jo, Youngheun Puxeddu, Maria Grazia Merritt, Haily Tanner, Jacob C. Greenwell, Sarah Patel, Riya Faskowitz, Joshua Betzel, Richard F. Department of Psychological and Brain Sciences Indiana University BloomingtonIN47405 United States Cognitive Science Program Indiana University BloomingtonIN47405 United States Program in Neuroscience Indiana University BloomingtonIN47405 United States Network Science Institute Indiana University BloomingtonIN47405 United States Department of Computer Control and Management Engineering Antonio Ruberti Sapienza University of Rome Rome00185 Italy IRCCS Fondazione Santa Lucia Rome00185 Italy

The modular structure of brain networks supports specialized information processing, complex dynamics, and cost-efficient spatial embedding. Inter-individual variation in modular structure has been linked to differences in performance, disease, and development. There exist many data-driven methods for detecting and comparing modular structure, the most popular of which is modularity maximization. Although modularity maximization is a general framework that can be modified and reparamaterized to address domain-specific research questions, its application to neuroscientific datasets has, thus far, been narrow. Here, we highlight several strategies in which the "out-of-the-box" version of modularity maximization can be extended to address questions specific to neuroscience. First, we present approaches for detecting "space-independent" modules and for applying modularity maximization to signed matrices. Next, we show that the modularity maximization frame is well-suited for detecting task- and condition-specific modules. Finally, we highlight the role of multi-layer models in detecting and tracking modules across time, tasks, subjects, and modalities. In summary, modularity maximization is a flexible and general framework that can be adapted to detect modular structure resulting from a wide range of hypotheses. This article highlights opens multiple frontiers for future research and applications. © 2021, CC BY.

关键词： Neurophysiology

GuessTheMusic: Song Identification from Electroencephalography response

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arXiv 2020年

作者： Sonawane, Dhananjay Miyapuram, Krishna Prasad Bharatesh, R.S. Lomas, Derek J. Computer Science and Engineering Indian Institute of Technology Gandhinagar Gujarat382355 India Centre for Cognitive and Brain Sciences Indian Institute of Technology Gandhinagar Gujarat382355 India Industrial Design Engineering Delft University of Technology Netherlands

The music signal comprises of different features like rhythm, timbre, melody, harmony. Its impact on the human brain has been an exciting research topic for the past several decades. Electroencephalography (EEG) signal enables non-invasive measurement of brain activity. Leveraging the recent advancements in deep learning, we proposed a novel approach for song identification using a Convolution Neural network given the electroencephalography (EEG) responses. We recorded the EEG signals from a group of 20 participants while listening to a set of 12 song clips, each of approximately 2 minutes, that were presented in random order. The repeating nature of Music is captured by a data slicing approach considering brain signals of 1 second duration as representative of each song clip. More specifically, we predict the song corresponding to one second of EEG data when given as input rather than a complete two-minute response. We have also discussed pre-processing steps to handle large dimensions of a dataset and various CNN architectures. For all the experiments, we have considered each participant’s EEG response for each song in both train and test data. We have obtained 84.96% accuracy for the same. The performance observed gives appropriate implication towards the notion that listening to a song creates specific patterns in the brain, and these patterns vary from person to person. Copyright © 2020, The Authors. All rights reserved.

关键词： Electroencephalography

Data Augmentation for Enhancing EEG-based Emotion Recognition with Deep Generative Models

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arXiv 2020年

作者： Luo, Yun Zhu, Li-Zhen Wan, Zi-Yu Lu, Bao-Liang Center for Brain-Like Computing and Machine Intelligence Department of Computer Science and Engineering Shanghai Jiao Tong University Shanghai200240 China Key Laboratory of Shanghai Education Commission for Intelligent Interaction and Cognitive Engineering Shanghai Jiao Tong University Shanghai200240 China Brain Science and Technology Research Center Shanghai Jiao Tong University Shanghai200240 China

The data scarcity problem in emotion recognition from electroencephalography (EEG) leads to difficulty in building an affective model with high accuracy using machine learning algorithms or deep neural networks. Inspired by emerging deep generative models, we propose three methods for augmenting EEG training data to enhance the performance of emotion recognition models. Our proposed methods are based on two deep generative models, variational autoencoder (VAE) and generative adversarial network (GAN), and two data augmentation strategies. For the full usage strategy, all of the generated data are augmented to the training dataset without judging the quality of the generated data, while for partial usage, only high-quality data are selected and appended to the training dataset. These three methods are called conditional Wasserstein GAN (cWGAN), selective VAE (sVAE), and selective WGAN (sWGAN). To evaluate the effectiveness of these methods, we perform a systematic experimental study on two public EEG datasets for emotion recognition, namely, SEED and DEAP. We first generate realistic-like EEG training data in two forms: power spectral density and differential entropy. Then, we augment the original training datasets with a different number of generated realistic-like EEG data. Finally, we train support vector machines and deep neural networks with shortcut layers to build affective models using the original and augmented training datasets. The experimental results demonstrate that the augmented training datasets produced by our methods enhance the performance of EEG-based emotion recognition models and outperform the existing data augmentation methods such as conditional VAE, Gaussian noise, and rotational data augmentation. Copyright © 2020, The Authors. All rights reserved.

关键词： Electrophysiology

Large language models surpass human experts in predicting neuroscience results

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arXiv 2024年

作者： Luo, Xiaoliang Rechardt, Akilles Sun, Guangzhi Nejad, Kevin K. Yáñez, Felipe Yilmaz, Bati Lee, Kangjoo Cohen, Alexandra O. Borghesani, Valentina Pashkov, Anton Marinazzo, Daniele Nicholas, Jonathan Salatiello, Alessandro Sucholutsky, Ilia Minervini, Pasquale Razavi, Sepehr Rocca, Roberta Yusifov, Elkhan Okalova, Tereza Gu, Nianlong Ferianc, Martin Khona, Mikail Patil, Kaustubh R. Lee, Pui-Shee Mata, Rui Myers, Nicholas E. Bizley, Jennifer K. Musslick, Sebastian Bilgin, Isil Poyraz Niso, Guiomar Ales, Justin M. Gaebler, Michael Murty, N. Apurva Ratan Loued-Khenissi, Leyla Behler, Anna Hall, Chloe M. Dafflon, Jessica Bao, Sherry Dongqi Love, Bradley C. Department of Experimental Psychology University College London London United Kingdom Department of Engineering University of Cambridge Cambridge United Kingdom Department of Physiology Anatomy & Genetics University of Oxford Oxford United Kingdom Max Planck Institute for Neurobiology of Behavior – caesar Bonn Germany Bilkent University Ankara Turkey Department of Computer Science University of Bristol Bristol United Kingdom The Alan Turing Institute London United Kingdom Department of Psychiatry Yale University New Haven United States Psychology Emory University Atlanta United States Faculty of Psychology and Educational Sciences Université de Genève Genève Switzerland Neurosurgery Novosibirsk State Medical University Novosibirsk Russia Federal Center of Neurosurgery FSBI Novosibirsk Russia Department of Data Collection and Processing Systems Novosibirsk State Technical University Novosibirsk Russia Department of Data Analysis Ghent University Ghent Belgium Psychology New York University New York United States Department of Cognitive Neurology University of Tübingen Tübingen Germany Computer Science Princeton University Princeton United States ILCC University of Edinburgh Edinburgh United Kingdom Philosophy Psychology and Language Sciences The University of Edinburgh Edinburgh United Kingdom Department of Culture Cognition and Computation Aarhus University Aarhus Denmark Department of Molecular Life Sciences University of Zurich Zurich Switzerland Bioengineering University of Pennsylvania Philadelphia United States Linguistic Research Infrastructure University of Zurich Zurich Switzerland Electronic and Electrical Engineering University College London London United Kingdom Brain and Cognitive Sciences Massachusetts Institute of Technology CambridgeMA United States Institute of Neuroscience and Medicine INM-7: Brain and Behaviour Research Centre Jülich Jülich Germany Medical Faculty Institute of Systems Neuroscience Heinrich Hein

Scientific discoveries often hinge on synthesizing decades of research, a task that potentially outstrips human information processing capacities. Large language models (LLMs) offer a solution. LLMs trained on the vast scientific literature could potentially integrate noisy yet interrelated findings to forecast novel results better than human experts. To evaluate this possibility, we created brainBench, a forward-looking benchmark for predicting neuroscience results. We find that LLMs surpass experts in predicting experimental outcomes. brainGPT, an LLM we tuned on the neuroscience literature, performed better yet. Like human experts, when LLMs were confident in their predictions, they were more likely to be correct, which presages a future where humans and LLMs team together to make discoveries. Our approach is not neuroscience-specific and is transferable to other knowledge-intensive endeavors. © 2024, CC BY.

关键词： Prediction models

A Neurobiological Evaluation Metric for Neural Network Model Search

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A Neurobiological Evaluation Metric for Neural Network Model...

IEEE/CVF Conference on computer Vision and Pattern Recognition

作者： Nathaniel Blanchard Brandon RichardWebster Jeffery Kinnison Pouya Bashivan Walter J. Scheirer Computer Science and Engineering University of Notre Dame McGovern Institute for Brain Research and Dept. of Brain and Cognitive Sciences MIT Dept. of Computer Science and Engineering University of Notre Dame

ISBN: (纸本)9781728132945

Neuroscience theory posits that the brain's visual system coarsely identifies broad object categories via neural activation patterns, with similar objects producing similar neural responses. Artificial neural networks also have internal activation behavior in response to stimuli. We hypothesize that networks exhibiting brain-like activation behavior will demonstrate brain-like characteristics, e.g., stronger generalization capabilities. In this paper we introduce a human-model similarity (HMS) metric, which quantifies the similarity of human fMRI and network activation behavior. To calculate HMS, representational dissimilarity matrices (RDMs) are created as abstractions of activation behavior, measured by the correlations of activations to stimulus pairs. HMS is then the correlation between the fMRI RDM and the neural network RDM across all stimulus pairs. We test the metric on unsupervised predictive coding networks, which specifically model visual perception, and assess the metric for statistical significance over a large range of hy-perparameters. Our experiments show that networks with increased human-model similarity are correlated with better performance on two computer vision tasks: next frame prediction and object matching accuracy. Further, HMS identifies networks with high performance on both tasks. An unexpected secondary finding is that the metric can be employed during training as an early-stopping mechanism.

关键词： Stimuli Metronidazole Metric Cerebrum Activation Network Neural Networks (computer) images computer vision Statistical Significance HIGH-PERFORMANCE

Applications of Game Theory in Vehicular Networks: A Survey

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arXiv 2021年

作者： Sun, Zemin Liu, Yanheng Wang, Jian Li, Guofa Anil, Carie Li, Keqiang Guo, Xinyu Sun, Geng Tian, Daxin Cao, Dongpu College of Computer Science and Technology Jilin University Changchun130012 China Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education Jilin University Changchun130012 China Institute of Human Factors and Ergonomics College of Mechatronics and Control Engineering Shenzhen University Guangdong Shenzhen518060 China School of Computer Science and Engineering VIT-AP Andhra Pradesh Amaravati522237 India College of Engineering Nanjing Agricultural University Nanjing210031 China State Key Laboratory of Automotive Safety and Energy Department of Automotive Engineering Tsinghua University Beijing100084 China Beijing Advanced Innovation Center for Big Data and Brain Computing Beijing Key Laboratory for Cooperative Vehicle Infrastructure Systems and Safety Control School of Transportation Science and Engineering Beihang University Beijing100191 China Waterloo Cognitive Autonomous Driving Lab University of Waterloo N2L 3G1 Canada

In the Internet of things (IoT) era, vehicles and other intelligent components in an intelligent transportation system (ITS) are connected, forming vehicular networks (VNs) that provide efficient and safe traffic and ubiquitous access to various applications. However, as the number of nodes in an ITS increases, it is challenging to satisfy a varied and large number of service requests with different quality of service (QoS) and security requirements in highly dynamic VNs. Intelligent nodes in VNs can compete or cooperate for limited network resources to achieve the objective for either an individual or a group. Game theory (GT), a theoretical framework designed for strategic interactions among rational decision makers sharing scarce resources, can be used to model and analyze individual or group behaviors of communicating entities in VNs. This paper primarily surveys the recent developments of GT in solving various challenges of VNs. This survey starts with an introduction to the background of VNs. A review of GT models studied in the VNs is then introduced, including the basic concepts, classifications, and applicable vehicular issues. After discussing the requirements of VNs and the motivation of using GT, a comprehensive literature review on GT applications in dealing with the challenges of current VNs is provided. Furthermore, recent contributions of GT to VNs that are integrated with diverse emerging 5G technologies are surveyed. Finally, the lessons learned are given, and several key research challenges and possible solutions of applying GT in VNs are outlined. Copyright © 2021, The Authors. All rights reserved.

关键词： Quality of service

Transfer Learning for EEG-Based brain-computer Interfaces: A Review of Progress Made Since 2016

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arXiv 2020年

作者： Wu, Dongrui Xu, Yifan Lu, Bao-Liang The Ministry of Education Key Laboratory of Image Processing and Intelligent Control School of Artificial Intelligence and Automation Huazhong University of Science and Technology Wuhan430074 China The Center for Brain-Like Computing and Machine Intelligence Department of Computer Science and Engineering Key Laboratory of Shanghai Education Commission for Intelligent Interaction and Cognitive Engineering Brain Science and Technology Research Center Qing Yuan Research Institute Shanghai Jiao Tong University 800 Dong Chuan Road Shanghai200240 China

A brain-computer interface (BCI) enables a user to communicate with a computer directly using brain signals. The most common non-invasive BCI modality, electroencephalogram (EEG), is sensitive to noise/artifact and suffers between-subject/within-subject non-stationarity. Therefore, it is difficult to build a generic pattern recognition model in an EEG-based BCI system that is optimal for different subjects, during different sessions, for different devices and tasks. Usually, a calibration session is needed to collect some training data for a new subject, which is time-consuming and user unfriendly. Transfer learning (TL), which utilizes data or knowledge from similar or relevant subjects/sessions/devices/tasks to facilitate learning for a new subject/session/device/task, is frequently used to reduce the amount of calibration effort. This paper reviews journal publications on TL approaches in EEG-based BCIs in the last few years, i.e., since 2016. Six paradigms and applications - motor imagery, event-related potentials, steady-state visual evoked potentials, affective BCIs, regression problems, and adversarial attacks - are considered. For each paradigm/application, we group the TL approaches into cross-subject/session, cross-device, and cross-task settings and review them separately. Observations and conclusions are made at the end of the paper, which may point to future research directions. Copyright © 2020, The Authors. All rights reserved.

关键词： brain computer interface

Supplemental educational program to heighten the impact of research - an opportunity for OA imaging

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Osteoarthritis imaging 2023年第2期3卷 100155页

作者： Deborah Burstein Rudolph Mitchell Emery Brown Martha L Gray Associate Professor Department of Radiology Beth Israel Deaconess Medical Center Harvard Medical School 330 Brookline Avenue Boston MA USA. Associate Director for Research and Evaluation in the Teaching + Learning Lab Massachusetts Institute of Technology Cambridge MA USA. Edward Hood Taplin Professor of Computational Neuroscience and Health Sciences and Technology Department of Brain and Cognitive Sciences and Institute for Medical Engineering and Science Massachusetts Institute of Technology Cambridge MA USA. J.W. Kieckefer Professor of Medical and Electrical Engineering Department of Electrical Engineering and Computer Science and Institute for Medical Engineering and Science Massachusetts Institute of Technology Cambridge MA USA.

Objective:To develop and evaluate a supplementary educational program ("IMPACT") centered on enabling participants to consider specifically and articulate explicitly the best path for and potential impact of their research. Design:Participants (trainees) and faculty mentors were from all areas of biomedical research. The group worked longitudinally in small, rotating groups, through a process of developing a written statement ("Impact Statement"), an overview ("Impact Storyline") and an oral presentation ("Impact Case") of their work. Results:One hundred and eighty-seven Fellows enrolled in the program. Of the 179 (96%) Fellows who completed the program, 159 (89%) responded to a post-program survey; 94% indicated that IMPACT was a significant learning experience, 89% indicated that they were more able to identify the long-term potential of their research, 95% felt more able to talk about their work to diverse audiences. Conclusion:This voluntary educational program was appreciated by the participants and led to increased confidence in their ability to drive their science towards a clear impact and communicating that potential to others. This type of program may aid in redirecting some of the efforts and resources of imaging in OA from the large focus on technical developments to more direct biological and clinical questions which might be resolved with current technology.

关键词： Communication Diversity Impact Research