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Meeting Report from the Second "Minimum Information for Biological and Biomedical Investigations" (MIBBI) workshop

Standards in genomic sciences 2010年第3期3卷 259-66页

作者： Carsten Kettner Dawn Field Susanna-Assunta Sansone Chris Taylor Jan Aerts Nigel Binns Andrew Blake Cedrik M Britten Ario de Marco Jennifer Fostel Pascale Gaudet Alejandra González-Beltrán Nigel Hardy Jan Hellemans Henning Hermjakob Nick Juty Jim Leebens-Mack Eamonn Maguire Steffen Neumann Sandra Orchard Helen Parkinson William Piel Shoba Ranganathan Philippe Rocca-Serra Annapaola Santarsiero David Shotton Peter Sterk Andreas Untergasser Patricia L Whetzel Beilstein-Institut Frankfurt am Main Germany Centre for Ecology & Hydrology UK Oxford e-Research Centre University of Oxford UK The European Bioinformatics Institute (EBI) UK Faculty of Engineering - ESAT/SCD Leuven University Leuven-Heverlee Belgium Division of Pathway Medicine University of Edinburgh Medical School Edinburgh UK MRC Harwell UK Medical Department University Medical Center Johannes Gutenberg University-Mainz Mainz Germany Consortium for Genomic Technology Milano Italy University of Nova Gorica Nova Gorica Slovenia NIEHS NIH US National Toxicology Program USA Swiss Institute of Bioinformatics Geneva Switzerland Computational and Systems Medicine and Department of Computer Science University College London London UK Department of Computer Science Aberystwyth University Aberystwyth UK Center for Medical Genetics Ghent University Ghent Belgium Department of Plant Biology University of Georgia Athens USA Department of Stress- and Developmental Biology Institute for Plant Biochemistry Halle Germany Peabody Museum of Natural History Yale University New Haven USA Macquarie University Sydney Australia National University of Singapore Singapore Cancer Pharmacology The Mario Negri Institute for Pharmacological Research Milan Italy Image Bioinformatics Research Group Department of Zoology University of Oxford Oxford UK Wellcome Trust Sanger Institute UK Zentrum für Molekulare Biologie der Universität Heidelberg Heidelberg Germany The National Center for Biomedical Ontology / Stanford Center for Biomedical Informatics Research Stanford University Stanford USA

This report summarizes the proceedings of the second workshop of the 'Minimum Information for Biological and Biomedical Investigations' (MIBBI) consortium held on Dec 1-2, 2010 in Rüdesheim, Germany through the sponsorship of the Beilstein-Institute. MIBBI is an umbrella organization uniting communities developing Minimum Information (MI) checklists to standardize the description of data sets, the workflows by which they were generated and the scientific context for the work. This workshop brought together representatives of more than twenty communities to present the status of their MI checklists and plans for future development. Shared challenges and solutions were identified and the role of MIBBI in MI checklist development was discussed. The meeting featured some thirty presentations, wide-ranging discussions and breakout groups. The top outcomes of the two-day workshop as defined by the participants were: 1) the chance to share best practices and to identify areas of synergy; 2) defining a series of tasks for updating the MIBBI Portal; 3) reemphasizing the need to maintain independent MI checklists for various communities while leveraging common terms and workflow elements contained in multiple checklists; and 4) revision of the concept of the MIBBI Foundry to focus on the creation of a core set of MIBBI modules intended for reuse by individual MI checklist projects while maintaining the integrity of each MI project. Further information about MIBBI and its range of activities can be found at http://***/.

关键词： Minimum Information European Bioinformatics Institute Biomedical Ontology Stable Link Breakout Group

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Evolving referential communication in embodied dynamical agents

Evolving referential communication in embodied dynamical age...

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11th International Conference on the Simulation and Synthesis of Living Systems: Artificial Life XI, ALIFE 2008

作者： Williams, Paul L. Beer, Randall D. Gasser, Michael Cognitive Science Program Indiana University Bloomington IN 47406 United States Dept. of Computer Science Indiana University Bloomington IN 47406 United States Dept. of Informatics Indiana University Bloomington IN 47406 United States

ISBN: (纸本)9780262750172

This paper presents results from three experiments which investigate the evolution of referential communication in embodied dynamical agents. Agents, interacting with only simple sensors and motors, are evolved in a task which requires one agent to communicate the locations of spatially distant targets to another agent. The results from these experiments demonstrate a variety of successful communication strategies, providing a first step towards understanding the emergence of referential communication in terms of coordinated behavioral interactions. © 2007 ***.

关键词： Biological systems

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Argument graph classification via genetic programming and C4.5

Argument graph classification via genetic programming and C4...

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1st International Conference on Educational Data Mining, EDM 2008

作者： Lynch, Collin Ashley, Kevin D. Pinkwart, Niels Aleven, Vincent Intelligent Systems Program University of Pittsburgh United States School of Law University of Pittsburgh United States Department of Informatics Clausthal University of Technology Germany HCII School of Computer Science Carnegie Mellon University United States

ISBN: (纸本)9780615306292

In well-defined domains there exist well-accepted criteria for detecting good and bad student solutions. Many ITS implement these criteria characterize solutions and to give immediate feedback. While this has been shown to promote learning, it is not always possible in ill-defined domains that typically lack well-accepted criteria. In this paper we report on the induction of classification rules for student solutions in an ill-defined domain. 1 We compare the viability of classifications using statistical measures with classification trees induced via C4.5 and Genetic programming.

关键词： Genetic programming

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Digital data security and hiding on virtual reality VDO 3DGIS-Map

Digital data security and hiding on virtual reality VDO 3DGI...

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IEEE International Conference on Management of Innovation and Technology, ICMIT

作者： Katanyoo Klubsuwan Surasak Mungsing PHD-Information Technology Sripatum University Bangkok Thailand Computer Science Program Faculty of Informatics Sripatum University Bangkok Thailand

Todaypsilas Information Technology supports varieties of e-commerce, in particular on-demand services such as news, message, seminar and presentation speech to message, and 3D Video GIS. Each service can have value-added by embedding other hidden-service within the main service, hence promoting value-added to the service. The value-added services are accomplished by using the technique of Multiple Keys and Messages Embedding (MKME), which hidden-contents can be retrieved only by applying the correct corresponding decryption keys This paper presents the design and algorithm for multiple keys and messages embedding on 3D Video GIS, based on Steganography concept. The quality of the resulting product was also investigated. The main data used is geospatial video, which is primarily used by the elderly and disables people so that they can feel the surroundings on their desktop while sitting at home.

关键词： Pixel Three dimensional displays Discrete cosine transforms Geographic information systems Security Image color analysis Cryptography

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Fuzzy Fusion for Affective State Assessment in Distance Learning Based on Image Detection

Fuzzy Fusion for Affective State Assessment in Distance Lear...

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2008 International Conference on Audio，Language and Image Processing(2008国际声音、语言、图像过程大会)

作者： Kuoan Hwang Chiahao Yang Department of Computer Science and Information Engineering & Graduate Institute of Networking and Co Graduate Institute of Informatics Doctoral program Chaoyang University of Technology

Distance learning is a learning style that can overcome the limitation of time and space. Because of the distance, teachers can not handle the student's learning situation, and they do not know whether the student is attentive, drowsy or absent. If teachers can know the student's affective state, they can overcome the difficult. The research applies the image recognition technologies to capture the face images of students when they are learning and analyzes their face features to evaluate the student's affective state by Fuzzy Integral. Finally, teachers can monitor the student's behavior by the detection results on the system interface.

关键词： Distance learning Skin computers Distance measurement Face Image color analysis Education

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A cooperative assessment of the response capability of emergency organizations

A cooperative assessment of the response capability of emerg...

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International Conference on computer Supported Cooperative Work in Design

作者： Rapahel S. Santos Marcos R. S. Borges Jose Orlando Gomes Jose H. Canos Graduate Program in Informatics Universidade Federal do Rio de Janeiro Brazil Department of Computer Science Technical University of Valencia Spain

ISBN: (纸本)9781424416509

In emergency response organizations with very limited resources, information technologies are not adequately explored. In such organizations, the simple adoption of new information technologies is not productive, as their efficient use depends on many other interrelated technologies. This work describes a model to help understanding these interrelationships. The model allows the cooperative evaluation of an organization through different perspectives. Using the model, an organization can measure its maturity level and guide the investment in emergency response capabilities. The information technology dimension of the model has been applied to the firefight organization in Brazil.

关键词： Information technology Investments Disaster management Fires informatics Industrial engineering computer science Visualization Capacity planning Uncertainty

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The Third International Conference on human-robot interaction

The Third International Conference on human-robot interactio...

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作者： Fong, Terry Dautenhahn, Kerstin Scheutz, Matthias Demiris, Yiannis Intelligent Robotics Group NASA Ames Research Center Department of Artificial Intelligence School of Computer Science University of Herfordshire Herfordshire United Kingdom Adaptive Systems Research Group University of Herfordshire Herfordshire United Kingdom Department of Cognitive Science Computer Science and Informatics Cognitive Science Program Indiana University Bloomington IN United States Intelligent Robotics Team Department of Electrical Engineering Imperial College London London United Kingdom

The third international conference on Human-Robot Interaction (HRI-2008) was held in Amsterdam, The Netherlands, March 12-15, 2008. The theme of HRI-2008, "living with robots," highlights the importance of the technical and social issues underlying human-robot interaction with companion and assistive robots for long-term use in everyday life and work activities. More than 250 researchers, practitioners, and exhibitors attended the conference, and many more contributed to the conference as authors or reviewers. HRI-2009 will be held in San Diego, California, from March 11-13, 2009. Copyright © 2008, Association for the Advancement of Artificial Intelligence. All rights reserved.

关键词： Human robot interaction

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Lessons learned from adapting a generic narrative diabetic-foot guideline to an institutional decision-support system

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作者： Peleg, Mor Wang, Dongwen Fodor, Adriana Keren, Sagi Karnieli, Eddy Department of Management Information Systems University of Haifa Haifa 31905 Israel Biomedical Informatics Program University of Rochester NY United States Institute of Endocrinology Diabetes and Metabolism Rambam Medical Center Israel Galil Center Technion-Israel Institute of Technology Israel Department of Computer Science University of Haifa Israel

ISBN: (纸本)9781586038731

Clinical guidelines usually need to be adapted to fit local practice before they can be actually used by clinicians. Reasons for adaptation include variations of institution setting such as type of practice and location, availability of resources, differences in patient populations, local policies, and practice patterns. When a guideline is implemented for clinical decision support and integrated with an institution's clinical information system, the data model of the local electronic medical record (EMR) and the data actually collected and stored in it also influence the guideline's adaptation. The purpose of this work is: (1) to characterize a tool-supported process for guideline encoding that addresses local adaptation and EMR integration, and (2) to identify the types of changes in guideline encoding during the local adaptation process. © 2008 The authors and IOS Press. All rights reserved.

关键词： Signal encoding

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Attentiveness Assessment in Learning Based on Fuzzy Logic Analysis

Attentiveness Assessment in Learning Based on Fuzzy Logic An...

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International Conference on Intelligent Systems Design and Applications (ISDA)

作者： Kuo-An Hwang Chia-Hao Yang Department of Computer Science and Information Engineering & Graduate Institute of Networking and CommunicationEngineering ChaoYang University of Technology Taiwan Graduate Institute of Informatics Doctoral program ChaoYang University of Technology Taiwan

Learner attention affects learning efficiency. However, in many classes, teachers cannot assess the degree of attention of every student. When a teacher is capable of addressing inattentive students immediately, he can avoid situations in which students are inattentive. Many studies have analyzed student attentiveness by the applying of image detection technologies. If this mechanism can be applied to in-class learning, it will help teachers keep students attentive, and reduce teacher load during class. This study mainly applies fuzzy logic analysis of student facial images when participating in class. Applying fuzzy logic can prevent erroneous judgments associated with a single term, and help teachers deal with student attentiveness.

关键词： Fuzzy logic Face detection Image analysis Image color analysis Education Eyes Design engineering Chaotic communication Image processing Face recognition

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An information theoretic framework for genomic data analysis

An information theoretic framework for genomic data analysis

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IEEE Symposium on Bioinformatics and Bioengineering (BIBE)

作者： Aaron McKenna Gil Alterovitz Bioinformatics Program Boston University Boston MA USA Harvard Partners Center for Genetics and Genomics Harvard Medical School Boston MA Department of Electrical Engineering and Computer Science Massachusetts Institute of Technology Cambridge MA Children's Hospital Informatics Program Boston MA

The breadth of biological data collected in the last decade has far outstripped the methods available to process it. To effectively investigate and explore this abundance of data, novel automated collection and analysis approaches must be devised. We have developed a new open software framework, the Open Genomic Analysis Platform (OGAP), to aid in the analysis of genomic data. It is capable of analyzing a variety of data source, and focuses on using information theory to characterize data. The frameworks has is capable of import a variety of genome tied data, and provides custom analysis and visualization of results. We then demonstrate the use of this framework analyzing the Prochlorococcus Marinus organism. We show a strong correlation between the information content of sequence data and up regulation of gene expression during lytic infection.

关键词： Genomics Bioinformatics Data analysis Biological information theory Open source software Information analysis Information theory Data visualization Organisms Gene expression

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