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2024 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2024

作者： Pang, Shanchen Wang, Ruiqian Wu, Wenhao Li, Hengxiao Wu, Jiarui Zhang, Yuanyuan Wang, Shudong College of Computer Science and Technology Qingdao Institute of Software Qingdao China Qingdao University of Technology School of Information and Control Engineering Qingdao China

ISBN: (纸本)9798350386226

Cluster assignment is crucial for analyzing single-cell RNA sequencing (scRNA-seq) data, essential for studying cell diversity and biological functions at the single-cell level. Deep learning-based clustering methods have been extensively applied in scRNA-seq data analysis. However, current deep models frequently overlook the deep exploration of potential gene correlation, resulting in networks lacking guidance from gene correlation information when learning hidden layer features. This paper proposes an adaptive feedback fuzzy clustering method based on deep gene correlation mining(scDCMAC). The deep gene correlation mining network employs contrast learning to compute the contrast loss on two cell similarity matrices, constructed from denoised autoencoder hidden layer features and original input features, to uncover potential gene correlation. The adaptive feedback clustering network further denoises the hidden layer features using a self-attention mechanism, computes the affiliation matrix, and supervises the denoising autoencoder's dimensionality reduction using the affiliation matrix. Experiments on 13 real scRNA-seq datasets demonstrate that scDCMAC excels in clustering accuracy and stability, showing great potential in scRNA-seq sample analysis. © 2024 IEEE.

关键词： Dimensionality reduction

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Multi-layer composite autoencoders for semi-supervised change detection in heterogeneous remote sensing images

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Science China(Information Sciences) 2023年第4期66卷 124-125页

作者： Jiao SHI Tiancheng WU Hanwen YU A.K.QIN Gwanggil JEON Yu LEI School of Electronics and Information Northwestern Polytechnical University School of Resources and Environment University of Electronic Science and Technology of China Department of Computer Science and Software Engineering Swinburne University of Technology Department of Embedded Systems Engineering Incheon National University

With the increasing complexity of application scenarios, the fusion of different remote sensing data types has gradually become a trend, which can greatly improve the utilization of massive remote sensing *** the problem of change detection for heterogeneous remote images can be much more complicated than the traditional change detection for homologous remote sensing images,

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CMCF-Net: An End-to-End Context Multiscale Cross-Fusion Network for Robust Copy-Move Forgery Detection

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IEEE Transactions on Multimedia 2024年 26卷 6090-6101页

作者： Xiong, Lizhi Xu, Jianhua Yang, Ching-Nung Zhang, Xinpeng Nanjing University of Information Science and Technology School of Computer Science Nanjing210044 China Jiangsu Collaborative Innovation Center on Atmospheric Environment and Equipment Technology Engineering Research Center of Digital Forensics Ministry of Education Nanjing210044 China Nanjing University of Information Science and Technology Software Engineering Nanjing210044 China National Dong Hwa University Department of Computer Science and Information Engineering Hualien974301 Taiwan Fudan University School of Computer Science Shanghai200433 China

Image copy-move forgery detection (CMFD) has become a challenging problem due to increasingly powerful editing software that makes forged images increasingly realistic. Existing algorithms that directly connect multiple scales of features in the encoder part may not effectively aggregate contextual information, resulting in poor performance. In this paper, an end-to-end context multiscale cross-fusion network (CMCF-Net) is proposed to detect image copy-move forgery. The proposed network consists of a multiscale feature extraction fusion (MSF) module and a multi-information fusion decoding (MFD) module. Multiscale information is efficiently extracted and fused in the MSF module utilizing stacked-scale feature fusion, which improves the network's forgery localization ability on objects of different scales. The MFD module employs contextual information combination and weighted fusion of multiscale information to guide the network in obtaining relevant clues from correlated information at multiple different scales. Experimental results and analysis have demonstrated that the proposed CMCF-Net achieves the best localization results with higher robustness. © 1999-2012 IEEE.

关键词： Feature extraction

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A Hybrid Method to Measure Distribution Consistency of Mixed-Attribute Datasets

IEEE Transactions on Artificial Intelligence

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IEEE Transactions on Artificial Intelligence 2023年第1期4卷 182-196页

作者： He, Yulin Ye, Xuan Huang, Defa Fournier-Viger, Philippe Huang, Joshua Zhexue College of Computer Science and Software Engineering Shenzhen University Shenzhen518060 China National Engineering Laboratory for Big Data System Computing Technology Shenzhen University Shenzhen518060 China

Random sample partition (RSP) is a newly developed data management and processing model for Big Data processing and analysis. To apply the RSP model for Big Data computation tasks, it is very important to measure the distribution consistency of different datasets. Existing measurement methods for continuous-attribute and discrete-attribute datasets cannot directly deal with mixed-attribute datasets. In this article, we design a hybrid method to measure the distribution consistency among different mixed-attribute datasets by using a multilayer extreme learning machine (MLELM) and the generalized maximum mean discrepancy (GMMD) criterion, abbreviated as MLELM-GMMD. MLELM is first used to transform original mixed-attribute datasets into corresponding deep encoding datasets. Then, the GMMD criterion is applied to check the distribution consistency of the deep encoding datasets. Four experiments have been done to validate the feasibility and effectiveness of MLELM-GMMD, i.e., the impact of MLELM on the amount of information during mixed-attribute data transformation, the impact of MLELM on distributions of mixed-attribute data, the distribution consistencies of RSP and non-RSP data blocks, and the comparison with other measurement methods. Experimental results show that the proposed MLELM-GMMD method can measure the distribution consistency of mixed-attribute datasets more accurately than one-hot encoding-based methods. © 2022 IEEE.

关键词： Data mining

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Fix the Tests: Augmenting LLMs to Repair Test Cases with Static Collector and Neural Reranker 35

Fix the Tests: Augmenting LLMs to Repair Test Cases with Sta...

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35th IEEE International Symposium on software Reliability engineering, ISSRE 2024

作者： Liu, Jun Yan, Jiwei Xie, Yuanyuan Yan, Jun Zhang, Jian State Key Laboratory of Computer Science Institute of Software China Chinese Academy of Sciences Technology Center of Software Engineering Institute of Software China China UCAS School of Intelligent Science and Technology Hangzhou Institute for Advanced Study China

ISBN: (纸本)9798350353884

During software evolution, it is advocated that test code should co-evolve with production code. In real development scenarios, test updating may lag behind production code changing, which may cause compilation failure or bring other troubles. Existing techniques based on pre-trained language models can be directly adopted to repair obsolete tests caused by such unsynchronized code changes, especially syntactic-related ones. However, the lack of task-oriented contextual information affects the repair accuracy on large-scale projects. Starting from an obsolete test, the key challenging task is precisely identifying and constructing Test-Repair-Oriented Contexts (TROCtxs) from the whole repository within a limited token *** this paper, we propose Synter (SYNtactic-breaking- changes-induced TEst Repair), a novel approach based on LLMs to automatically repair obsolete test cases via precise and concise TROCtxs construction. Inspired by developers' programming practices, we design three types of TROCtx: class context, usage context, and environment context. Given an obsolete test case to repair, Synter firstly collects the related code information for each type of TROCtx through static analysis techniques automatically. Then, it generates reranking queries to identify the most relevant TROCtxs, which will be taken as the repair-required key contexts and be input to the large language model for the final test *** evaluate the effectiveness of Synter, we construct a benchmark dataset that contains a set of obsolete tests caused by syntactic breaking changes. The experimental results show that Synter outperforms baseline approaches both on textual- and intent-matching metrics. With the augmentation of constructed TROCtxs, hallucinations are reduced by 57.1%. © 2024 IEEE.

关键词： Syntactics

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A Novel Locomotion Rule Rmbedding Long Short-Term Memory Network with Attention for Human Locomotor Intent Classification Using Multi-Sensors Signals

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computers, Materials & Continua 2024年第6期79卷 4349-4370页

作者： Jiajie Shen Yan Wang Dongxu Zhang Key Laboratory of Symbol Computation and Knowledge Engineering Ministry of EducationColleague of Computer Science and TechnologyJilin UniversityChangchun130012China College of Software and Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of EducationJilin UniversityChangchun130012China

Locomotor intent classification has become a research hotspot due to its importance to the development of assistive robotics and wearable *** work have achieved impressive performance in classifying steady locomotion ***,it remains challenging for these methods to attain high accuracy when facing transitions between steady locomotion *** to the similarities between the information of the transitions and their adjacent steady ***,most of these methods rely solely on data and overlook the objective laws between physical activities,resulting in lower accuracy,particularly when encountering complex locomotion modes such as *** address the existing deficiencies,we propose the locomotion rule embedding long short-term memory(LSTM)network with Attention(LREAL)for human locomotor intent classification,with a particular focus on transitions,using data from fewer sensors(two inertial measurement units and four goniometers).The LREAL network consists of two levels:One responsible for distinguishing between steady states and transitions,and the other for the accurate identification of locomotor *** classifier in these levels is composed of multiple-LSTM layers and an attention *** introduce real-world motion rules and apply constraints to the network,a prior knowledge was added to the network via a rule-modulating *** method was tested on the ENABL3S dataset,which contains continuous locomotion date for seven steady and twelve transitions *** results showed that the LREAL network could recognize locomotor intents with an average accuracy of 99.03%and 96.52%for the steady and transitions states,*** is worth noting that the LREAL network accuracy for transition-state recognition improved by 0.18%compared to other state-of-the-art network,while using data from fewer sensors.

关键词： Lower-limb prosthetics deep neural networks motion classification

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SyNet:Medical image anomaly detection with noise synthesis network 10

SyNet:Medical image anomaly detection with noise synthesis n...

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10th IEEE Conference on Big Data Security on Cloud, BigDataSecurity 2024

作者： Liu, Jingnian Liang, Wei Chen, Yuxiang Jin, Kai Hunan University of Science and Technology Hunan Key Laboratory for Service Computing and Novel Software Technology School of Computer Science and Engineering Xiangtang China

ISBN: (纸本)9798350389524

Medical image anomaly detection refers to machine learning techniques to analyze and identify lesions and abnormalities in them. However, in medical images, anomaly samples are usually sparse, which can lead to supervised learning not being able to obtain sufficient training. While existing unsupervised learning is mainly based on reconstruction and generation as well as feature embedding, these methods do not take into account the problem of data type bias during domain migration and often face the problem of loose judgment boundaries. To this end, this paper proposes a novel unsupervised learning method, SyNet, based on noisy anomaly synthesis. First, the problem at domain migration is well solved by aggregating the range of features within the feature map, fusing the multiscale features at the intermediate level, and adding feature adapters. Then, anomaly samples are synthesized by adding noise in the feature space, which is more efficient and stable than generating samples in the image space. Finally, normal and abnormal data are distinguished by training the discriminator. In this paper, experiments are conducted on ISIC and brain MRI datasets, and SyNet achieves nearly 20% improvement in AUC, ACC and other metrics compared with the current mainstream methods, and also has good inference efficiency. © 2024 IEEE.

关键词： Anomaly detection

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Enhancing Classification Algorithm Recommendation in Automated Machine Learning: A Meta-Learning Approach Using Multivariate Sparse Group Lasso

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computer Modeling in engineering & Sciences 2025年第2期142卷 1611-1636页

作者： Irfan Khan Xianchao Zhang Ramesh Kumar Ayyasamy Saadat M.Alhashmi Azizur Rahim School of Software Dalian University of TechnologyDalian116620China Faculty of Information and Communication Technology Universiti Tunku Abdul RahmanKampar31900Malaysia College of Computing and Informatics University of SharjahSharjah27272United Arab Emirates Department of Computer Systems Engineering University of Engineering and Applied SciencesSwat19200Pakistan

The rapid growth of machine learning(ML)across fields has intensified the challenge of selecting the right algorithm for specific tasks,known as the Algorithm Selection Problem(ASP).Traditional trial-and-error methods have become impractical due to their resource *** Machine Learning(AutoML)systems automate this process,but often neglect the group structures and sparsity in meta-features,leading to inefficiencies in algorithm recommendations for classification *** paper proposes a meta-learning approach using Multivariate Sparse Group Lasso(MSGL)to address these *** method models both within-group and across-group sparsity among meta-features to manage high-dimensional data and reduce multicollinearity across eight meta-feature *** Fast Iterative Shrinkage-Thresholding Algorithm(FISTA)with adaptive restart efficiently solves the non-smooth optimization *** validation on 145 classification datasets with 17 classification algorithms shows that our meta-learning method outperforms four state-of-the-art approaches,achieving 77.18%classification accuracy,86.07%recommendation accuracy and 88.83%normalized discounted cumulative gain.

关键词： Meta-learning machine learning automated machine learning classification meta-features

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Recommending Missed Citations Identified by Reviewers: A New Task, Dataset and Baselines 30

Recommending Missed Citations Identified by Reviewers: A New...

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Joint 30th International Conference on Computational Linguistics and 14th International Conference on Language Resources and Evaluation, LREC-COLING 2024

作者： Long, Kehan Li, Shasha Wang, Pancheng Bao, Chenlong Tang, Jintao Wang, Ting School of Computer National University of Defense Technology China Key Laboratory of Software Engineering for Complex Systems National University of Defense Technology China

ISBN: (纸本)9782493814104

Citing comprehensively and appropriately has become a challenging task with the explosive growth of scientific publications. Current citation recommendation systems aim to recommend a list of scientific papers for a given text context or a draft paper. However, none of the existing work focuses on already included citations of full papers, which are imperfect and still have much room for improvement. In the scenario of peer reviewing, it is a common phenomenon that submissions are identified as missing vital citations by reviewers. This may lead to a negative impact on the credibility and validity of the research presented. To help improve citations of full papers, we first define a novel task of Recommending Missed Citations Identified by Reviewers (RMC) and construct a corresponding expert-labeled dataset called CitationR. We conduct an extensive evaluation of several state-of-the-art methods on CitationR. Furthermore, we propose a new framework RMCNet with an Attentive Reference Encoder module mining the relevance between papers, already-made citations, and missed citations. Empirical results prove that RMC is challenging, with the proposed architecture outperforming previous methods in all metrics. We release our dataset and benchmark models to motivate future research on this challenging new task. © 2024 ELRA Language Resource Association: CC BY-NC 4.0.

关键词： Paper

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Time Series Data Cleaning under Expressive Constraints on Both Rows and Columns 40

Time Series Data Cleaning under Expressive Constraints on Bo...

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40th IEEE International Conference on Data engineering, ICDE 2024

作者： Ding, Xiaoou Li, Genglong Wang, Hongzhi Wang, Chen Song, Yichen School of Computer Science and Technology Harbin Institute of Technology China Tsinghua University National Engineering Laboratory for Big Data Software EIRI China

ISBN: (纸本)9798350317152

Time series data generated by thousands of sensors are suffering data quality problems. Traditional constraint-based techniques have greatly contributed to data cleaning applications. However, cleaning methods that support expressive constraints on time series data remain insufficient. Given the notable characteristics of time series data, existing cleaning approaches are challenged to provide good repair solutions. To address the challenges, we propose a novel data cleaning method for time series which incorporates expressive constraints that support arithmetic operations between attributes and time context. In the violation detection phase, we introduce specialized violation degree quantification functions and design a violation cell discovery algorithm to identify errors hidden in time series data. In the data repairing phase, we formalize the cleaning task as a constrained optimization problem and develop a novel repair objective function that considers both modification costs and conformance degrees of constraints. We effectively reduce the repair search space through the evaluation of time-context constraints and propose a bidirectional repairing algorithm. We also provide theoretical analysis of the proposed repairing method. Experimental results on three real-world IoT datasets across five metrics demonstrate that our proposed method outperforms seven state-of-the-art cleaning techniques specialized for time series data. Specifically, we achieve a 60% improvement in repairing effectiveness and a 70% reduction in time costs with our designed cleaning strategy. © 2024 IEEE.

关键词： Time series

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