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Heat Kernels for Non-Rigid Shape Retrieval: Sparse Representation and Efficient Classification

Heat Kernels for Non-Rigid Shape Retrieval: Sparse Represent...

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Canadian Conference on computer and Robot vision, CRV

作者： Mostafa Abdelrahman Moumen El-Melegy Aly Farag Computer Vision and Image Processing Laboratory University of Louisville Louisville KY USA Electrical Engineering Department Assiut University Asyut Egypt

One of the major goals of computer vision and machine intelligence is the development of flexible and efficient methods for shape representation. This paper presents an approach for shape retrieval based on sparse representation of scale-invariant heat kernel. We use the Laplace-Beltrami eigen functions to detect a small number of critical points on the shape surface. Then a shape descriptor is formed based on the heat kernels at the detected critical points for different scales, combined with the normalized eigen values of the Lap lace-Beltrami operator. Sparse representation is used to reduce the dimensionality of the calculated descriptor. The proposed descriptor is used for classification via the collaborative representation-based classification with regularized least square algorithm. We compare our approach to two well-known approaches on two different data sets: the nonrigid world data set and the SHREC 2011. The results have indeed confirmed the improved performance of the proposed approach, yet reducing the time and space complicity of the shape retrieval problem.

关键词： Shape Heating Eigenvalues and eigenfunctions Kernel Vectors Manifolds Heat transfer

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Automatic segmentation of brain tumors in magnetic resonance images

Automatic segmentation of brain tumors in magnetic resonance...

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IEEE-EMBS International Conference on Biomedical and Health Informatics, BHI 2012. In Conj. with the 8th Int. Symp.on Medical Devices and Biosensors and the 7th Int. Symp. on Biomedical and Health engineering

作者： Behzadfar, Neda Soltanian-Zadeh, Hamid Control and Intelligent Processing Center of Excellence School of Electrical and Computer Engineering University of Tehran Tehran 14395-515 Iran Pooyandegan Rah Saadat Company Tehran 16756-965 Iran Image Analysis Laboratory Radiology Department HenryFord Healh System Detroit MI 48202 United States

ISBN: (纸本)9781457721779

Segmentation of tumors in magnetic resonance images (MRI) is an important task but is quite time consuming when performed manually by experts. Automating this process is challenging due to the high diversity in appearance of tumor tissue in different patients, and in many cases, similarity between tumor and normal tissues. This paper presents an automatic method for segmentation of brain tumors in MRI. We use images of patients with glioblastoma multiform tumors. After pre-processing and removal of the regions that do not have useful information (e.g., eyes and scalp), we create a projection image for determining the primary location of the tumor. This image provides an overall view of the tumor. Then, we grow the primary region to segment the entire tumor. This method is automatic and independent of the operator. It segments low contrast tumors without requiring their exacta tissue boundaries. The segmentation results obtained by the proposed approach are compared with those of an expert radiologist showing excellent correlations among them (R2=0.97). © 2012 IEEE.

关键词： Tumors

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2D PCA-based shape prior for level sets segmentation framework of the vertebral body

2D PCA-based shape prior for level sets segmentation framewo...

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Cairo International Biomedical engineering Conference, CIBEC

作者： Ahmed Shalaby Melih Aslan Hossam Abdelmunim Aly A. Farag Computer Vision and Image Processing Laboratory University of Louisville KY USA Computer & Systems Engineering Department Ain Shams University Cairo Egypt

In this paper, a novel statistical shape modeling method is developed for the vertebral body (VB) segmentation framework. Two-dimensional principle component analysis (2D-PCA) technique is exploited to extract the shape prior. The obtained shape prior is then embedded into the image domain to develop a new shape-based segmentation approach. Our framework consists of four main steps: i) shape model construction using 2D-PCA, ii) Detection of the VB region using the Matched filter, iii) Initial segmentation using the graph cuts which integrates the intensity and spatial interaction models, and iv) Registration of the shape prior and initially segmented region to obtain the final segmentation. The proposed method is validated on a Phantom as well as clinical CT images with various Gaussian noise levels. The experimental results show that the noise immunity and the segmentation accuracy of 2D-PCA based approach are much higher than conventional PCA approach.

关键词： Shape image segmentation Training Principal component analysis Accuracy Computed tomography Vectors

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Thermographic image analysis method in detection of canine bone cancer (osteosarcoma)

Thermographic image analysis method in detection of canine b...

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Congress on image and Signal Processing, CISP

作者： Maryamsadat Amini Peng Liu Scott E Umbaugh Dominic J. Marino Catherine A. Loughin Computer Vision and Image Processing Laboratory Electrical and Computer Engineering Southern Illinois University Edwardsville IL USA Long Island Veterinary Specialists Plainview NY USA

Bone cancer is a pathologic condition which may occur for both humans and canines. This tumor develops quickly from within the bone tissue and become painful as it grows outward. A metastasized bone tumor may be cured by amputation, otherwise it will be fatal. The current diagnostic imaging methods for bone cancer are X-rays, Computed Tomography scan (CT scan), and Magnetic Resonance Imaging (MRI). The disadvantages of these methods include not enough detail in X-ray images, high dose of radiation from CT scans, and high expense of the time-consuming MRI method. In most of the bone cancer cases, when this tumor is detected by these imaging methods, it has already metastasized. The study is to investigate whether it is possible to detect canine bone cancer by thermography imaging. This alternative imaging method will decrease diagnostic time, expenses and prevent radiation exposure. The best classification success rate obtained in this study is 80.77%.

关键词： Feature extraction image color analysis Cancer Pattern classification Bones Software Histograms

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Generic rebooting scheme and model-based probabilistic pruning algorithm for tree-like structure tracking

Generic rebooting scheme and model-based probabilistic pruni...

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IEEE International Symposium on Biomedical Imaging

作者： Ziyue Xu Fei Zhao Roshni Bhagalia Bipul Das Department of Electrical and Computer Engineering University of Iowa Iowa IA USA Biomedical Image Analysis Laboratory GE Global Research Center Niskayuna NY USA Medical Image Analysis Laboratory GE Global Research Center Bangalore India

Tree-like vessel structures are an information-rich source for many image analysis tasks. Hence tracking algorithms extracting such structures have wide applicability. However, due to image artifacts and the minute nature of vessels, these algorithms face several challenges; two of the most common ones are 1) early termination, where tracking stops before the structure ends and 2) leaking, where tracking leaks into nearby closed organs or irrelevant structures. To address these issues, this paper makes two main contributions: a generic rebooting scheme that identifies early terminations and then restarts tracking to track objects in their entirety and a modelbased pruning algorithm that uses global optimization to identify and mitigate leaking. The performance of the proposed algorithm is demonstrated by tracking coronary arteries on 3D cardiac Computed Tomography Angiography (CTA) data from 28 human subjects. Our methods dramatically improve tracking results by detecting and recovering from early terminations and identifying and removing leaking in 98% (63 of 64) branches, with a single erroneously removed valid branch.

关键词： Arteries Probabilistic logic Algorithm design and analysis Optimization image segmentation Bifurcation Computational modeling

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Voxel-based treatment prediction of glioblastoma multiform tumor using diffusion tensor imaging

Voxel-based treatment prediction of glioblastoma multiform t...

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作者： Sabahi, Hadi Soltanian-Zadeh, Hamid Scarpace, Lisa Mikkelsen, Tom Control and Intelligent Processing Center of Excellence School of Electrical and Computer Engineering University of Tehran Tehran 14395-515 Iran Image Analysis Laboratory Radiology Department Henry Ford Hospital Detroit MI 48202 United States Hermelin Brain Tumor Research Center Neurosurgery Department Henry Ford Health System Detroit MI 48202 United States

ISBN: (纸本)9781457721779

This paper proposes a method to predict the effect of Bevacizumab therapy on Glioblastoma Multiform (GBM) tumors. The prediction is critical for effective treatment planning. The proposed method is developed and evaluated using Diffusion Tensor Imaging (DTI) and post-contrast T1-weighted Magnetic Resonance images (pc-T1-MRI) of 14 patients with GBM tumors gathered before and after the treatment. First, the proposed method calculates diffusion anisotropy indices (DAI) of all voxels in the brain. These diffusion anisotropy indices are Fractional Anisotropy (FA), Mean Diffusivity (MD), Relative Anisotropy (RA), and Volume Ratio (VR). Then, it registers post-treatment pc-T1-MRI and pre-treatment DAI maps to pre-treatment pc-T1-MRI. Next, it uses a thresholding method to segment the tumor from pc-T1-MRI studies. Comparing Gd-enhanced voxels of the pre- and post-treatment pc-T1-MRI, the DAIs of the tumor are labeled based on their response to the treatment. The voxels of 7 patients are randomly selected to train 4 classifiers (ANN, SVM, KNN, and ANFIS) and then all voxels of the other 7 patients are used to test them. For each classifier, four performance measures (sensitivity, specificity, positive predictive value, and accuracy) are calculated. Experimental results show that the ANFIS is more accurate than the other classifiers in predicting the treatment response. © 2012 IEEE.

关键词： Tumors

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Coral reef mosaicking using Teardrop and Fast image Labeling

Coral reef mosaicking using Teardrop and Fast Image Labeling

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OCEANS - Europe

作者： Francis James Corpuz Prospero Naval Eusebio Capili Jaylord Jauod Roel John Judilla Maricor Soriano Vision and Image Processing Group Instrumentation Physics Laboratory National Institute of Physics Computer Vision and Machine Intelligence Group Department of Computer Science College of Engineering University of Philippines Quezon Philippines Computer Vision and Machine Intelligence Group Department of Computer Science College of Engineering University of Philippines Quezon Philippines Mapua Robotics Center Special Projects Laboratory Institutional Laboratory Mgmt Office Mapua Institute of Technology Manila Philippines Vision and Image Processing Group Instrumentation Physics Laboratory National Institute of Physics University of Philippines Quezon Philippines

In this paper, we present an inexpensive system for diverless video capture and fast image stitching of image frames for rapid reef assessment of shallow coral reefs. Our system has two main components: 1) Teardrop, a boat-towable, winged hull apparatus designed to house a commercial digital camera, and 2) a mosaicking algorithm to stitch the coral reef video into mosaics for further appreciation and analysis. The captured reef video is then separated into image frames which are to be stitched sequentially using Fast image Labeling. The overlap between image frames is estimated using Single-Step DFT, an efficient sub-pixel estimation algorithm. The estimated overlap is used to compute for the area to be added to the mosaic space. The overlapping section between succeeding image-pairs are stitched along a seam determined by a minimal-cost path using dynamic programming. The visibility of the seam boundaries is further minimized by utilizing blending on multi-resolution splines. Experimental results on automated reef mosaics creation from actual coral reef video taken using Teardrop shows the performance of the system described. The main contribution of this work is the demonstration of a rapid reef visualization system using a diverless system and commercially available, non-research-grade imaging equipment.

关键词： image segmentation Sea measurements Cameras Labeling Discrete Fourier transforms Sea floor

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Coral reef mosaicking using Teardrop and Fast image Labeling

Coral reef mosaicking using Teardrop and Fast Image Labeling

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OCEANS 2012 MTS/IEEE Yeosu Conference: The Living Ocean and Coast - Diversity of Resources and Sustainable Activities

作者： Corpuz, Francis James Naval, Prospero Capili, Eusebio Jauod, Jaylord Judilla, Roel John Soriano, Maricor Vision and Image Processing Group National Institute of Physics University of the Philippines Diliman Quezon City Philippines Department of Computer Science College of Engineering University of the Philippines Diliman Quezon City Philippines Mapua Robotics Center Special Projects Laboratory Mapua Institute of Technology Intramuros Manila Philippines

ISBN: (纸本)9781457720895

关键词： Reefs

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Interpolation of Orientation Distribution Functions (ODFs) in Q-ball Imaging

Interpolation of Orientation Distribution Functions (ODFs) i...

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Iranian Conference of Biomedical engineering

作者： Maryam Afzali Emad Fatemizadeh Hamid Soltanian-Zadeh Department of Electrical Engineering Biomedical Signal and Image Processing Laboratory(BiSIPL) Sharif University of Technology Tehran Iran Control and Intelligent Processing Center of Excellence(CIPCE) School of Electrical and Computer Engineering University of Tehran Tehran Iran & Image Analysis Laboratory Radiology Department Henry Ford Health System Detroit Michigan USA

ISBN: (纸本)9781467331289

Diffusion tensor magnetic resonance imaging (DTMRI) is a non-invasive method for investigating the brain white matter structure. It can be used to evaluate fiber bundles in the brain but in the regions with crossing fibers, it fails. To resolve this problem, high angular resolution diffusion imaging (HARDI) with a large number of diffusion encoding directions is used and for reconstruction, the Q-ball method is applied. In this method, orientation distribution function (ODF) of fibers can be calculated. Mathematical models play a crucial role in the field of ODF. For instance, in registering Q-ball images for applications like group analysis or atlas construction, one needs to interpolate ODFs. To this end, principal diffusion directions (PDDs) of each ODF are needed. In this paper, PDDs are defined as vectors that connect the corresponding local maxima of ODF values. Then, ODFs are interpolated using PDDs. The proposed method is evaluated and compared with previous protocols. Experimental results show that the proposed interpolation algorithm preserves the principal direction of fiber tracts without producing any deviations in the tracts. It is shown that changes in the entropy of the interpolated ODFs are almost linear and the bloating effect (blurring of the principal directions) can be removed.

关键词： High angular resolution diffusion imaging (HARDI) Q-ball imaging Orientation distribution function (ODF) Interpolation Principal diffusion direction (PDD)

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3D computational modeling of epiretinal prosthesis stimulation of the ganglion cell

3D computational modeling of epiretinal prosthesis stimulati...

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IEEE EMBS International Conference on Information Technology Applications in Biomedicine (ITAB)

作者： Shabnam Novin Hamid Abrishami Moghaddam Amir Masoud Sodagar Amin Mahnam Research Laboratory for Integrated Circuits and Systems (I CAS) Department of Electrical and Computer Engineering K.N. Toosi University of Technology Tehran Iran Research Laboratory for Machine Vision and Medical Image Processing (MVMIP) Department of Electrical and Computer Engineering K.N. Toosi University of Technology Tehran Iran Ecole Polytechnique de Montreal Montreal QUE Canada Department of Biomedical Engineering School of Engineering University of Isfahan Isfahan Iran

Here we present a modeling for electrical stimulation of retinal ganglion cell. This modeling can be used in epiretinal prosthesis to come up with proper electrical stimulation parameters. The model that we present is a novel one based on the anatomy of the cell. The excitation process of the electrically stimulated retinal cells is simulated in a two step procedure. In the first step the ganglion target cell is represented considering all of its compartments and in a second step the extracellular potential along the neural structure is calculated and finally the membrane voltage response to the applied stimulations is analyzed. A monopolar point electrode was positioned above the cell in an infinite and homogenous environment and the monophasic and biphasic pulses were used as stimulating current. The results show that the responses are in accordance with the values and diagrams of experimental results more than the previous models.

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