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Acquiring Weak Annotations for Tumor Localization in Temporal and Volumetric Data

Machine Intelligence Research 2024年第2期21卷 318-330页

作者： Yu-Cheng Chou Bowen Li Deng-Ping Fan Alan Yuille Zongwei Zhou Department of Computer Science Johns Hopkins UniversityBaltimore 21218USA Computer Vision Lab ETH ZurichZurich 8001Switzerland

Creating large-scale and well-annotated datasets to train AI algorithms is crucial for automated tumor detection and ***,with limited resources,it is challenging to determine the best type of annotations when annotating massive amounts of unlabeled *** address this issue,we focus on polyps in colonoscopy videos and pancreatic tumors in abdominal CT scans;Both applications require significant effort and time for pixel-wise annotation due to the high dimensional nature of the data,involving either temporary or spatial *** this paper,we develop a new annotation strategy,termed Drag&Drop,which simplifies the annotation process to drag and *** annotation strategy is more efficient,particularly for temporal and volumetric imaging,than other types of weak annotations,such as per-pixel,bounding boxes,scribbles,ellipses and ***,to exploit our Drag&Drop annotations,we develop a novel weakly supervised learning method based on the watershed *** results show that our method achieves better detection and localization performance than alternative weak annotations and,more importantly,achieves similar performance to that trained on detailed per-pixel ***,we find that,with limited resources,allocating weak annotations from a diverse patient population can foster models more robust to unseen images than allocating per-pixel annotations for a small set of *** summary,this research proposes an efficient annotation strategy for tumor detection and localization that is less accurate than per-pixel annotations but useful for creating large-scale datasets for screening tumors in various medical modalities.

关键词： Weak annotation detection localization segmentation colonoscopy abdomen

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DNACoder: a CNN-LSTM attention-based network for genomic sequence data compression

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Neural Computing and Applications 2024年第29期36卷 18363-18376页

作者： Sheena, K.S. Nair, Madhu S. Artificial Intelligence & amp Computer Vision Lab Department of Computer Science Cochin University of Science and Technology Kerala Kochi682022 India

Genomic sequencing has become increasingly prevalent, generating massive amounts of data and facing a significant challenge in long-term storage and transmission. A solution that reduces the storage and transfer requirements without compromising data integrity is needed. The effectiveness of neural networks has already been endorsed in tasks like image and speech compression. Adapting them to recognize the intricate patterns in genomic sequences could help to find more redundancies and reduce storage requirements. The proposed method, called DNACoder, leverages deep learning techniques to achieve significant compression ratios while preserving the essential information in genomic data and offers a high-performance compression for genomic sequences in any data format. The results of the experiments clearly demonstrate the effectiveness of the method and its potential applications in genomic data storage. Our proposed method improves compression by 21.1% on bits per base compared to existing compressors on the benchmarked dataset. By using a deep learning prediction model that is structured as a convolutional layer followed by an attention-based long short-term memory network, we propose a novel lossless and reference-free compression approach (DNACoder), which can also be utilized as a reference-based compressor. The experimental outcome on the tested data illustrates that the advocated compression algorithm’s CNN-LSTM model makes generalizations effectively for genomic sequence data and outperforms the state-of-the-art methods. © The Author(s), under exclusive licence to Springer-Verlag London Ltd., part of Springer Nature 2024.

关键词： Long short-term memory

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TextFormer: A Query-based End-to-end Text Spotter with Mixed Supervision

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Machine Intelligence Research 2024年第4期21卷 704-717页

作者： Yukun Zhai Xiaoqiang Zhang Xiameng Qin Sanyuan Zhao Xingping Dong Jianbing Shen School of Computer Science Beijing Institute of TechnologyBeijing 100081China Department of Computer Vision Technology Baidu Inc.Beijing 100193China

End-to-end text spotting is a vital computer vision task that aims to integrate scene text detection and recognition into a unified *** methods heavily rely on region-of-interest(Rol)operations to extract local features and complex post-processing steps to produce final *** address these limitations,we propose TextFormer,a query-based end-to-end text spotter with a transformer ***,using query embedding per text instance,TextFormer builds upon an image encoder and a text decoder to learn a joint semantic understanding for multitask *** allows for mutual training and optimization of classification,segmentation and recognition branches,resulting in deeper feature sharing without sacrificing flexibility or ***,we design an adaptive global aggregation(AGG)module to transfer global features into sequential features for reading arbitrarilyshaped texts,which overcomes the suboptimization problem of Rol ***,potential corpus information is utilized from weak annotations to full labels through mixed supervision,further improving text detection and end-to-end text spotting *** experiments on various bilingual(i.e.,English and Chinese)benchmarks demonstrate the superiority of our *** on the TDA-ReCTS dataset,TextFormer surpasses the state-of-the-art method in terms of 1-NED by 13.2%.

关键词： End-to-end text spotting arbitrarily-shaped texts transformer mixed supervision multitask modeling.

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Correction to: DNACoder: a CNN-LSTM attention-based network for genomic sequence data compression (Neural Computing and Applications, (2024), 36, 29, (18363-18376), 10.1007/s00521-024-10130-4)

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Neural Computing and Applications 2025年 1-2页

作者： Sheena, K.S. Nair, Madhu S. Artificial Intelligence & Computer Vision Lab Department of Computer Science Cochin University of Science and Technology Kerala Kochi682022 India

In this article, the Eq. (2) and Eq. (3) were incorrectly displayed and it should have been displayed as given below (Formula presented.) (Formula presented.) where n is the total number of key-value pairs in the sequence The original article has been corrected. © The Author(s), under exclusive licence to Springer-Verlag London Ltd., part of Springer Nature 2025.

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Segmentation of Head and Neck Tumors Using Dual PET/CT Imaging:Comparative Analysis of 2D,2.5D,and 3D Approaches Using UNet Transformer

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computer Modeling in Engineering & sciences 2024年第12期141卷 2351-2373页

作者： Mohammed A.Mahdi Shahanawaj Ahamad Sawsan A.Saad Alaa Dafhalla Alawi Alqushaibi Rizwan Qureshi Information and Computer Science Department College of Computer Science and EngineeringUniversity of Ha’ilHa’il55476Saudi Arabia Software Engineering Department College of Computer Science and EngineeringUniversity of Ha’ilHa’il55476Saudi Arabia Computer Engineering Department College of Computer Science and EngineeringUniversity of Ha’ilHa’il55476Saudi Arabia Department of Computer and Information Sciences Universiti Teknologi PetronasSeri Iskandar32610Malaysia Center for Research in Computer Vision(CRCV) University of Central FloridaOrlandoFL 32816USA

The segmentation of head and neck(H&N)tumors in dual Positron Emission Tomography/Computed Tomogra-phy(PET/CT)imaging is a critical task in medical imaging,providing essential information for diagnosis,treatment planning,and outcome *** by the need for more accurate and robust segmentation methods,this study addresses key research gaps in the application of deep learning techniques to multimodal medical ***,it investigates the limitations of existing 2D and 3D models in capturing complex tumor structures and proposes an innovative 2.5D UNet Transformer model as a *** primary research questions guiding this study are:(1)How can the integration of convolutional neural networks(CNNs)and transformer networks enhance segmentation accuracy in dual PET/CT imaging?(2)What are the comparative advantages of 2D,2.5D,and 3D model configurations in this context?To answer these questions,we aimed to develop and evaluate advanced deep-learning models that leverage the strengths of both CNNs and *** proposed methodology involved a comprehensive preprocessing pipeline,including normalization,contrast enhancement,and resampling,followed by segmentation using 2D,2.5D,and 3D UNet Transformer *** models were trained and tested on three diverse datasets:HeckTor2022,AutoPET2023,and *** was assessed using metrics such as Dice Similarity Coefficient,Jaccard Index,Average Surface Distance(ASD),and Relative Absolute Volume Difference(RAVD).The findings demonstrate that the 2.5D UNet Transformer model consistently outperformed the 2D and 3D models across most metrics,achieving the highest Dice and Jaccard values,indicating superior segmentation *** instance,on the HeckTor2022 dataset,the 2.5D model achieved a Dice score of 81.777 and a Jaccard index of 0.705,surpassing other model *** 3D model showed strong boundary delineation performance but exhibited variability across datasets,while the

关键词： PET/CT imaging tumor segmentation weighted fusion transformer multi-modal imaging deep learning neural networks clinical oncology

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Small object detection in diverse application landscapes: a survey

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Multimedia Tools and Applications 2024年第41期83卷 88645-88680页

作者： Iqra Giri, Kaisar J. Javed, Mohammed Department of Computer Science Islamic University of Science & Technology Pulwama India Computer Vision & Biometrics Lab Dept. of IT Indian Institute of Information Technology Allahabad India

The importance of object detection within computer vision, especially in the context of detecting small objects, has notably increased. This thorough survey extensively examines small object detection across various applications, consolidating and outlining the available methodologies. Traditional papers on small object detection have focused on specific domains. However, this survey paper incorporates insights from a multitude of domains, providing a comprehensive understanding of the versatility and applicability of small object detection techniques. This paper sheds light on the key challenges faced and delves into potential solutions to address the challenges, offering insights into viable solutions to enhance small object detection performance, setting it apart from existing literature. The strategies identified in our survey encompass a spectrum of approaches, categorized as transformer-based, CNN, and traditional methods. Also, this paper collates prevalent datasets relevant to small object detection, simplifying access to these resources. Further, it provides a succinct overview of diverse evaluation metrics used for performance assessment in this field, enhancing understanding of the effectiveness and proficiency of these methods. This survey paper not only consolidates established knowledge but also highlights innovative viewpoints, providing a comprehensive and enlightening compilation that contributes to the advancement of small object detection in the field of computer vision. © The Author(s), under exclusive licence to Springer science+Business Media, LLC, part of Springer Nature 2024.

关键词： Feature extraction

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A State-Migration Particle Swarm Optimizer for Adaptive Latent Factor Analysis of High-Dimensional and Incomplete Data

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IEEE/CAA Journal of Automatica Sinica 2024年第11期11卷 2220-2235页

作者： Jiufang Chen Kechen Liu Xin Luo Ye Yuan Khaled Sedraoui Yusuf Al-Turki MengChu Zhou IEEE the College of Computer Science and Technology Chongqing University of Posts and Telecommunications the Department of Computer Science Columbia University the College of Computer and Information Science Southwest University the Department of Electrical and Computer Engineering Faculty of Engineeringand also with K.A.CARE Energy Research and Innovation CenterKing Abdulaziz University the Center of Research Excellence in Renewable Energy and Power Systems the Department of Electrical and Computer EngineeringFaculty of Engineeringand also with K.A.CARE Energy Research and Innovation CenterKing Abdulaziz University the Department of Electrical and Computer Engineering New Jersey Institute of Technology

High-dimensional and incomplete(HDI) matrices are primarily generated in all kinds of big-data-related practical applications. A latent factor analysis(LFA) model is capable of conducting efficient representation learning to an HDI matrix,whose hyper-parameter adaptation can be implemented through a particle swarm optimizer(PSO) to meet scalable ***, conventional PSO is limited by its premature issues,which leads to the accuracy loss of a resultant LFA model. To address this thorny issue, this study merges the information of each particle's state migration into its evolution process following the principle of a generalized momentum method for improving its search ability, thereby building a state-migration particle swarm optimizer(SPSO), whose theoretical convergence is rigorously proved in this study. It is then incorporated into an LFA model for implementing efficient hyper-parameter adaptation without accuracy loss. Experiments on six HDI matrices indicate that an SPSO-incorporated LFA model outperforms state-of-the-art LFA models in terms of prediction accuracy for missing data of an HDI matrix with competitive computational ***, SPSO's use ensures efficient and reliable hyper-parameter adaptation in an LFA model, thus ensuring practicality and accurate representation learning for HDI matrices.

关键词： Data science generalized momentum high-dimensional and incomplete(HDI)data hyper-parameter adaptation latent factor analysis(LFA) particle swarm optimization(PSO)

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A hybrid feature selection method for text classification using a feature-correlation-based genetic algorithm

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Soft Computing 2024年第23期28卷 13567-13593页

作者： Farek, Lazhar Benaidja, Amira Computer Science Department University of Guelma Guelma Algeria Computer Science Department University of Setif 1 Setif Algeria Laboratory of Vision and Artificial Intelligence - LAVIA Larbi Tebessi University Tebessa Algeria

This paper introduces a new hybrid method to address the issue of redundant and irrelevant features selected by filter-based methods for text classification. The method utilizes an enhanced genetic algorithm called "Feature Correlation-based Genetic Algorithm" (FC-GA). Initially, a feature subset with the highest classification accuracy is selected by a filter-based method, which will be then used by the FC-GA to generate potential solutions by considering the correlation between features that have similar classification weights and avoiding useless random solutions. The encoding process involves assigning a value of 0 to features that provide a high degree of correlation with other features having almost the same classification information beyond a specified context, while features that are lowly correlated retain their initial code of 1. Through iterative optimization using crossover and mutation operators, the algorithm should remove redundant features that provide strong correlations and high redundancy, which could lead to improved classification performance at a lower computation cost. The aim of this study is to improve the efficiency of filter-based methods, incorporate feature correlation information into genetic algorithms, and utilize pre-optimized feature subsets to efficiently identify optimal solutions. To evaluate the effectiveness of the proposed method, SVM and NB classifiers are employed on six public datasets and compared to five well-known and effective filter-based methods. The results indicate that a significant portion (about 50%) of the features selected by reference filter-based methods are redundant. Eliminating those redundant features leads to a significant improvement in classification performance as measured by the micro-f1 measure. © The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature 2024.

关键词： Genetic algorithms

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Learning continuous network emerging dynamics from scarce observations via data-adaptive stochastic processes

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science China(Information sciences) 2024年第12期67卷 240-255页

作者： Jiaxu CUI Qipeng WANG Bingyi SUN Jiming LIU Bo YANG College of Computer Science and Technology Jilin University Key Laboratory of Symbolic Computation and Knowledge Engineering of Ministry of Education Jilin University Public Computer Education and Research Center Jilin University Department of Computer Science Hong Kong Baptist University

Learning network dynamics from the empirical structure and spatio-temporal observation data is crucial to revealing the interaction mechanisms of complex networks in a wide range of domains. However,most existing methods only aim at learning network dynamic behaviors generated by a specific ordinary differential equation instance, resulting in ineffectiveness for new ones, and generally require dense *** observed data, especially from network emerging dynamics, are usually difficult to obtain, which brings trouble to model learning. Therefore, learning accurate network dynamics with sparse, irregularly-sampled,partial, and noisy observations remains a fundamental challenge. We introduce a new concept of the stochastic skeleton and its neural implementation, i.e., neural ODE processes for network dynamics(NDP4ND), a new class of stochastic processes governed by stochastic data-adaptive network dynamics, to overcome the challenge and learn continuous network dynamics from scarce observations. Intensive experiments conducted on various network dynamics in ecological population evolution, phototaxis movement, brain activity, epidemic spreading, and real-world empirical systems, demonstrate that the proposed method has excellent data adaptability and computational efficiency, and can adapt to unseen network emerging dynamics, producing accurate interpolation and extrapolation with reducing the ratio of required observation data to only about 6% and improving the learning speed for new dynamics by three orders of magnitude.

关键词： complex networks network dynamics emerging spatio-temporal dynamics neural processes

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Arrhythmia Detection by Using Chaos Theory with Machine Learning Algorithms

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computers, Materials & Continua 2024年第6期79卷 3855-3875页

作者： Maie Aboghazalah Passent El-kafrawy Abdelmoty M.Ahmed Rasha Elnemr Belgacem Bouallegue Ayman El-sayed Math and Computer Science Department Faculty of ScienceMenoufia UniversityShebin El-komEgypt College of Engineering Computer Science DepartmentEffat UniversityJeddahKingdom of Saudi Arabia Department of Computer Engineering College of Computer ScienceKing Khalid UniversityAbha61421Saudi Arabia Computer Science and Engineering Department Faculty of Electronic EngineeringMenoufia UniversityShebin El-komEgypt Climate Change Information Center and Expert Systems Agriculture Research CenterGizaEgypt

Heart monitoring improves life ***(ECGs or EKGs)detect heart *** learning algorithms can create a few ECG diagnosis processing *** first method uses raw ECG and time-series *** second method classifies the ECG by patient *** third technique translates ECG impulses into Q waves,R waves and S waves(QRS)features using richer *** ECG signals vary naturally between humans and activities,we will combine the three feature selection methods to improve classification accuracy and *** using all three approaches have not been examined till *** researchers found that Machine Learning(ML)techniques can improve ECG *** study will compare popular machine learning techniques to evaluate ECG *** algorithms—Support Vector Machine(SVM),Decision Tree,Naive Bayes,and Neural Network—compare categorization *** plus prior knowledge has the highest accuracy(99%)of the four ML *** characteristics failed to identify signals without chaos *** 99.8%classification accuracy,the Decision Tree technique outperformed all previous experiments.

关键词： ECG extraction ECG leads time series prior knowledge and arrhythmia chaos theory QRS complex analysis machine learning ECG classification

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