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arXiv 2023年

作者： Reinke, Annika Tizabi, Minu D. Baumgartner, Michael Eisenmann, Matthias Heckmann-Nötzel, Doreen Kavur, A. Emre Rädsch, Tim Sudre, Carole H. Acion, Laura Antonelli, Michela Arbel, Tal Bakas, Spyridon Benis, Arriel Blaschko, Matthew B. Buettner, Florian Cardoso, M. Jorge Cheplygina, Veronika Chen, Jianxu Christodoulou, Evangelia Cimini, Beth A. Collins, Gary S. Farahani, Keyvan Ferrer, Luciana Galdran, Adrian van Ginneken, Bram Glocker, Ben Godau, Patrick Haase, Robert Hashimoto, Daniel A. Hoffman, Michael M. Huisman, Merel Isensee, Fabian Jannin, Pierre Kahn, Charles E. Kainmueller, Dagmar Kainz, Bernhard Karargyris, Alexandros Karthikesalingam, Alan Kenngott, Hannes Kleesiek, Jens Kofler, Florian Kooi, Thijs Kopp-Schneider, Annette Kozubek, Michal Kreshuk, Anna Kurc, Tahsin Landman, Bennett A. Litjens, Geert Madani, Amin Maier-Hein, Klaus Martel, Anne L. Mattson, Peter Meijering, Erik Menze, Bjoern Moons, Karel G.M. Müller, Henning Nichyporuk, Brennan Nickel, Felix Petersen, Jens Rafelski, Susanne M. Rajpoot, Nasir Reyes, Mauricio Riegler, Michael A. Rieke, Nicola Saez-Rodriguez, Julio Sánchez, Clara I. Shetty, Shravya Summers, Ronald M. Taha, Abdel A. Tiulpin, Aleksei Tsaftaris, Sotirios A. van Calster, Ben Varoquaux, Gaël Yaniv, Ziv R. Jäger, Paul F. Maier-Hein, Lena Faculty of Mathematics and Computer Science Heidelberg University Heidelberg Germany Heidelberg Division of Intelligent Medical Systems Germany NCT Heidelberg A Partnership Between DKFZ University Medical Center Heidelberg Germany Heidelberg Division of Medical Image Computing Germany Heidelberg Division of Intelligent Medical Systems Germany MRC Unit for Lifelong Health and Ageing UCL Centre for Medical Image Computing Department of Computer Science University College London London United Kingdom School of Biomedical Engineering and Imaging Science King’s College London London United Kingdom Instituto de Cálculo CONICET – Universidad de Buenos Aires Buenos Aires Argentina Centre for Medical Image Computing University College London London United Kingdom McGill University Montreal Canada Division of Computational Pathology Dept of Pathology & Laboratory Medicine Indiana University School of Medicine IU Health Information and Translational Sciences Building Indianapolis United States University of Pennsylvania Richards Medical Research Laboratories FL7 PhiladelphiaPA United States Department of Digital Medical Technologies Holon Institute of Technology Holon Israel European Federation for Medical Informatics Le Mont-sur-Lausanne Switzerland Center for Processing Speech and Images Department of Electrical Engineering KU Leuven Leuven Belgium partner site Frankfurt/Mainz a partnership between DKFZ and UCT Frankfurt Marburg Germany Heidelberg Germany Goethe University Frankfurt Department of Medicine Germany Goethe University Frankfurt Department of Informatics Germany and Frankfurt Cancer Insititute Germany Department of Computer Science IT University of Copenhagen Copenhagen Denmark Leibniz-Institut für Analytische Wissenschaften – ISAS – e.V. Dortmund Germany Imaging Platform Broad Institute of MIT and Harvard CambridgeMA United States Centre for Statistics in Medicine University of Oxford Oxford United Kingdom Center for Biomedical In

Validation metrics are key for tracking scientific progress and bridging the current chasm between artificial intelligence (AI) research and its translation into practice. However, increasing evidence shows that particularly in image analysis, metrics are often chosen inadequately. While taking into account the individual strengths, weaknesses, and limitations of validation metrics is a critical prerequisite to making educated choices, the relevant knowledge is currently scattered and poorly accessible to individual researchers. Based on a multi-stage Delphi process conducted by a multidisciplinary expert consortium as well as extensive community feedback, the present work provides the first reliable and comprehensive common point of access to information on pitfalls related to validation metrics in image analysis. While focused on biomedical image analysis, the addressed pitfalls generalize across application domains and are categorized according to a newly created, domain-agnostic taxonomy. The work serves to enhance global comprehension of a key topic in image analysis validation. © 2023, CC BY.

关键词： computer vision

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Metrics Reloaded: Recommendations for image analysis validation

arXiv

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arXiv 2022年

作者： Maier-Hein, Lena Reinke, Annika Godau, Patrick Tizabi, Minu D. Buettner, Florian Christodoulou, Evangelia Glocker, Ben Isensee, Fabian Kleesiek, Jens Kozubek, Michal Reyes, Mauricio Riegler, Michael A. Wiesenfarth, Manuel Emre Kavur, A. Sudre, Carole H. Baumgartner, Michael Eisenmann, Matthias Heckmann-Nötzel, Doreen Rädsch, Tim Acion, Laura Antonelli, Michela Arbel, Tal Bakas, Spyridon Benis, Arriel Blaschko, Matthew B. Jorge Cardoso, M. Cheplygina, Veronika Cimini, Beth A. Collins, Gary S. Farahani, Keyvan Ferrer, Luciana Galdran, Adrian Ginneken, Bram Van Haase, Robert Hashimoto, Daniel A. Hoffman, Michael M. Huisman, Merel Jannin, Pierre Kahn, Charles E. Kainmueller, Dagmar Kainz, Bernhard Karargyris, Alexandros Karthikesalingam, Alan Kenngott, Hannes Kofler, Florian Kopp-Schneider, Annette Kreshuk, Anna Kurc, Tahsin Landman, Bennett A. Litjens, Geert Madani, Amin Maier-Hein, Klaus Martel, Anne L. Mattson, Peter Meijering, Erik Menze, Bjoern Moons, Karel G.M. Müller, Henning Nichyporuk, Brennan Nickel, Felix Petersen, Jens Rajpoot, Nasir Rieke, Nicola Saez-Rodriguez, Julio Sánchez, Clara I. Shetty, Shravya Smeden, Maarten Van Summers, Ronald M. Taha, Abdel A. Tiulpin, Aleksei Tsaftaris, Sotirios A. Calster, Ben Van Varoquaux, Gaël Jäger, Paul F. Heidelberg Division of Intelligent Medical Systems and HI Helmholtz Imaging Germany Faculty of Mathematics and Computer Science and Medical Faculty Heidelberg University Heidelberg Germany NCT Heidelberg a partnership between DKFZ University Medical Center Heidelberg Germany Faculty of Mathematics and Computer Science Heidelberg University Heidelberg Germany Heidelberg Division of Intelligent Medical Systems Germany partner site Frankfurt/Mainz a partnership between DKFZ and UCT Frankfurt-Marburg Germany Heidelberg Goethe University Frankfurt Germany Department of Medicine Goethe University Frankfurt Germany Department of Informatics Frankfurt Cancer Insititute Germany Department of Computing Imperial College London London United Kingdom Heidelberg Division of Medical Image Computing and HI Applied Computer Vision Lab Germany Institute for AI in Medicine University Medicine Essen Essen Germany Centre for Biomedical Image Analysis Faculty of Informatics Masaryk University Brno Czech Republic ARTORG Center for Biomedical Engineering Research University of Bern Bern Switzerland Department of Radiation Oncology University Hospital Bern University of Bern Bern Switzerland Simula Metropolitan Center for Digital Engineering Oslo Norway UiT The Arctic University of Norway Romsø Norway Heidelberg Division of Biostatistics Germany Heidelberg Division of Intelligent Medical Systems Division of Medical Image Computing HI Applied Computer Vision Lab Germany MRC Unit for Lifelong Health and Ageing UCL Centre for Medical Image Computing Department of Computer Science University College London London United Kingdom School of Biomedical Engineering and Imaging Science King’s College London London United Kingdom Heidelberg Division of Medical Image Computing Germany Instituto de Cálculo CONICET – Universidad de Buenos Aires Buenos Aires Argentina Centre for Medical Image Computing University College London London United Kingdom McGill University Montréal

Increasing evidence shows that flaws in machine learning (ML) algorithm validation are an underestimated global problem. Particularly in automatic biomedical image analysis, chosen performance metrics often do not reflect the domain interest, thus failing to adequately measure scientific progress and hindering translation of ML techniques into practice. To overcome this, we created Metrics Reloaded, a comprehensive framework guiding researchers in the problem-aware selection of metrics. It was developed by a large international consortium in a multi-stage Delphi process and is based on the novel concept of a problem fingerprint – a structured representation of the given problem that captures all aspects that are relevant for metric selection, from the domain interest to the properties of the target structure(s), data set and algorithm output. Based on the problem fingerprint, users are guided through the process of choosing and applying appropriate validation metrics while being made aware of potential pitfalls. Metrics Reloaded targets image analysis problems that can be interpreted as a classification task at image, object or pixel level, namely image-level classification, object detection, semantic segmentation, and instance segmentation tasks. To improve the user experience, we implemented the framework in the Metrics Reloaded online tool. Following the convergence of ML methodology across application domains, Metrics Reloaded fosters the convergence of validation methodology. Its applicability is demonstrated for various biomedical use cases. © 2022, CC BY.

关键词： Semantic Segmentation

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Common Limitations of Image Processing Metrics: A Picture Story

arXiv

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arXiv 2021年

作者： Reinke, Annika Tizabi, Minu D. Sudre, Carole H. Eisenmann, Matthias Rädsch, Tim Baumgartner, Michael Acion, Laura Antonelli, Michela Arbel, Tal Bakas, Spyridon Bankhead, Peter Benis, Arriel Blaschko, Matthew Buettner, Florian Cardoso, M. Jorge Chen, Jianxu Cheplygina, Veronika Christodoulou, Evangelia Cimini, Beth A. Collins, Gary S. Engelhardt, Sandy Farahani, Keyvan Ferrer, Luciana Galdran, Adrian van Ginneken, Bram Glocker, Ben Godau, Patrick Haase, Robert Hamprecht, Fred Hashimoto, Daniel A. Heckmann-Nötzel, Doreen Hirsch, Peter Hoffman, Michael M. Huisman, Merel Isensee, Fabian Jannin, Pierre Kahn, Charles E. Kainmueller, Dagmar Kainz, Bernhard Karargyris, Alexandros Karthikesalingam, Alan Kavur, A. Emre Kenngott, Hannes Kleesiek, Jens Kleppe, Andreas Koehler, Sven Kofler, Florian Kopp-Schneider, Annette Kooi, Thijs Kozubek, Michal Kreshuk, Anna Kurc, Tahsin Landman, Bennett A. Litjens, Geert Madani, Amin Maier-Hein, Klaus Martel, Anne L. Mattson, Peter Meijering, Erik Menze, Bjoern Moher, David Moons, Karel G.M. Müller, Henning Nichyporuk, Brennan Nickel, Felix Noyan, M. Alican Petersen, Jens Polat, Gorkem Rafelski, Susanne M. Rajpoot, Nasir Reyes, Mauricio Rieke, Nicola Riegler, Michael A. Rivaz, Hassan Saez-Rodriguez, Julio Sánchez, Clara I. Schroeter, Julien Saha, Anindo Selver, M. Alper Sharan, Lalith Shetty, Shravya Smeden, Maarten V.A.N. Stieltjes, Bram Summers, Ronald M. Taha, Abdel A. Tiulpin, Aleksei Tsaftaris, Sotirios A. Calster, Ben V.A.N. Varoquaux, Gaël Wiesenfarth, Manuel Yaniv, Ziv R. Jäger, Paul Maier-Hein, Lena Division of Intelligent Medical Systems and HI Helmholtz Imaging Heidelberg Germany Faculty of Mathematics and Computer Science Heidelberg University Heidelberg Germany Division of Intelligent Medical Systems Heidelberg Germany NCT Heidelberg DKFZ University Medical Center Heidelberg Germany MRC Unit for Lifelong Health and Ageing UCL Centre for Medical Image Computing Department of Computer Science University College London London United Kingdom School of Biomedical Engineering and Imaging Science King’s College London London United Kingdom Division of Medical Image Computing Heidelberg Germany Instituto de Cálculo CONICET – Universidad de Buenos Aires Buenos Aires Argentina Centre for Medical Image Computing University College London London United Kingdom McGill University Montréal Canada Division of Computational Pathology Dept of Pathology & Laboratory Medicine Indiana University School of Medicine IU Health Information and Translational Sciences Building Indianapolis United States University of Pennsylvania Richards Medical Research Laboratories FL7 PhiladelphiaPA United States Institute of Genetics and Cancer University of Edinburgh Edinburgh United Kingdom Department of Digital Medical Technologies Holon Institute of Technology Holon Israel European Federation for Medical Informatics Le Mont-sur-Lausanne Switzerland Center for Processing Speech and Images Department of Electrical Engineering KU Leuven Kasteelpark Arenberg 10 - box 2441 Leuven3001 Belgium Frankfurt/Mainz DKFZ UCT Frankfurt-Marburg Germany Heidelberg Germany Goethe University Frankfurt Department of Medicine Germany Goethe University Frankfurt Department of Informatics Germany Frankfurt Cancer Insititute Germany Leibniz-Institut für Analytische Wissenschaften – ISAS – e.V. Dortmund Germany Department of Computer Science IT University of Copenhagen Copenhagen Denmark Imaging Platform Broad Institute of MIT and Harvard CambridgeMA United States Centre for St

While the importance of automatic image analysis is continuously increasing, recent meta-research revealed major flaws with respect to algorithm validation. Performance metrics are particularly key for meaningful, objective, and transparent performance assessment and validation of the used automatic algorithms, but relatively little attention has been given to the practical pitfalls when using specific metrics for a given image analysis task. These are typically related to (1) the disregard of inherent metric properties, such as the behaviour in the presence of class imbalance or small target structures, (2) the disregard of inherent data set properties, such as the non-independence of the test cases, and (3) the disregard of the actual biomedical domain interest that the metrics should reflect. This living dynamically document has the purpose to illustrate important limitations of performance metrics commonly applied in the field of image analysis. In this context, it focuses on biomedical image analysis problems that can be phrased as image-level classification, semantic segmentation, instance segmentation, or object detection task. The current version is based on a Delphi process on metrics conducted by an international consortium of image analysis experts from more than 60 institutions worldwide. © 2021, CC BY.

关键词： Medical imaging

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26th Annual Computational Neuroscience Meeting (CNS*2017) of the Organization for Computational Neuroscience Antwerp, Belgium, July 15-20, 2017

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BMC NEUROscience 2017年第SUPPL 1期18卷 59-59页

作者： [Anonymous] Indiana University Purdue University Indianapolis Indianapolis IN 46032 USA Stark Neurosciences Research Institute Indiana University School of Medicine Indianapolis IN 46032 USA Department of Mathematics East Carolina University Greenville NC 27858 USA Jülich Supercomputing Centre Forschungszentrum Jülich 52425 Jülich Germany Future Systems Swiss National Supercomputing Centre 8092 Zurich Switzerland User Engagement and Support Swiss National Supercomputing Centre 6900 Lugano Switzerland Institut de Neurosciences des Systèmes Aix Marseille Univ 13005 Marseille France Simulation Lab Neuroscience Forschungszentrum Jülich Jülich Germany Department of Experimental Psychology Ghent University 9000 Ghent Belgium Donders Center for Cognitive Neuroimaging Radboud University 6525HR Nijmegen The Netherlands Department of Electrical Computer and Energy Engineering University of Colorado Boulder CO 80309 USA Department of Neurosurgery Johns Hopkins School of Medicine Baltimore MD 21287 USA Department of Neurology Johns Hopkins School of Medicine Baltimore MD 21287 USA Department of Otolaryngology Johns Hopkins School of Medicine Baltimore MD 21287 USA INSERM U968 Paris France Sorbonne Universités UPMC University Paris 06 UMR_S 968 Institut de la Vision Paris France CNRS UMR_7210 Paris France Department of Computer Architecture and Technology University of Granada (CITIC) Granada Spain Sorbonne Universités UPMC Univ Paris 06 INSERM CNRS Institut de la Vision Paris France Department of Adaptive Machine Systems Osaka University Osaka Japan Department of Computer Science University of Cergy-Pontoise Cergy-Pontoise France Department of Physics and Astronomy College of Charleston Charleston SC 29424 USA School of Physics Faculty of Science University of Sydney Sydney NSW 2006 Australia Center of Excellence for Integrative Brain Function Australian Research Council Sydney Australia Max Planck Institute for Human Cognitive and Brain Sciences Saxony Lei

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Object and pose recognition using contour and shape information

Object and pose recognition using contour and shape informat...

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12th International Conference on Advanced Robotics, 2005. ICAR '05

作者： Cornelius, Hugo Kragic, Danica Eklundh, Jan-Olof Computational Vision and Active Perception Laboratory Centre for Autonomous Systems Stockholm Sweden Department of Numerical Analysis and Computing Science Royal Institute of Technology Stockholm Sweden

ISBN: (纸本)0780391772

Object recognition and pose estimation are of significant importance for robotic visual servoing, manipulation and grasping tasks. Traditionally, contour and shape based methods have been considered as most adequate for estimating stable and feasible grasps, [1]. More recently, a new research direction has been advocated in visual servoing where image moments are used to define a suitable error function to be minimized. Compared to appearance based methods, contour and shape based approaches are also suitable for use with range sensors such as, for example, lasers. In this paper, we evaluate a contour based object recognition system building on the method in [2], suitable for objects of uniform color properties such as cups, cutlery, fruits etc. This system is one of the building blocks of a more complex object recognition system based both on stereo and appearance cues, [3]. The system has a significant potential both in terms of service robot and programming by demonstration tasks. Experimental evaluation shows promising results in terms of robustness to occlusion and noise. © 2005 IEEE.

关键词： Industrial robots

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Object and pose recognition using contour and shape information

Object and pose recognition using contour and shape informat...

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International Conference on Advanced Robotics (ICAR)

作者： H. Cornelius D. Kragic J.-O. Eklundh Computational Vision and Active Perception Laboratory Centre for Autonomous Systems Department of Numerical Analysis and Computing Science Royal Institute of Technology Stockholm Sweden

Object recognition and pose estimation are of significant importance for robotic visual servoing, manipulation and grasping tasks. Traditionally, contour and shape based methods have been considered as most adequate for estimating stable and feasible grasps (Bicchi and Kumar, 2000). A new research direction has been advocated in visual servoing where image moments are used to define a suitable error function to be minimized. Compared to appearance based methods, contour and shape based approaches are also suitable for use with range sensors such as, for example, lasers. In this paper, we evaluate a contour based object recognition system building on the method in Nelson and Selinger (1998), suitable for objects of uniform color properties such as cups, cutlery, fruits etc. This system is one of the building blocks of a more complex object recognition system based both on stereo and appearance cues, (Bjorkman and Kragic, 2004). The system has a significant potential both in terms of service robot and programming by demonstration tasks. Experimental evaluation shows promising results in terms of robustness to occlusion and noise

关键词： Shape Object recognition Service robots Robot programming Visual servoing Robotics and automation computer vision Noise robustness Manufacturing industries Automatic programming

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Velocity adaptation of space-time interest points

Velocity adaptation of space-time interest points

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International Conference on Pattern Recognition

作者： I. Laptev T. Lindeberg Computational Vision and Active Perception Laboratory (CVAP) Department of Numerical Analysis and Computer Science KTH Royal Institute of Technology Stockholm Sweden

The notion of local features in space-time has recently been proposed to capture and describe local events in video. When computing space-time descriptors, however, the result may strongly depend on the relative motion between the object and the camera. To compensate for this variation, we present a method that automatically adapts the features to the local velocity of the image pattern and, hence, results in a video representation that is stable with respect to different amounts of camera motion. Experimentally we show that the use of velocity adaptation substantially increases the repeatability of interest points as well as the stability of their associated descriptors. Moreover, for an application to human action recognition we demonstrate how velocity-adapted features enable recognition of human actions in situations with unknown camera motion and complex, non-stationary backgrounds.

关键词： Cameras Humans Image motion analysis Pattern recognition Motion measurement Optical recording Covariance matrix computer vision laboratories numerical analysis

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Low-dimensional representations of shaded surfaces under varying illumination

Low-dimensional representations of shaded surfaces under var...

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Conference on computer vision and Pattern Recognition (CVPR)

作者： P. Nillius J.-O. Eklundh Computational Vision & Active Perception Laboratory (CVAP) Department of Numerical Analysis and Computing Science Royal Institute of Technology Stockholm Sweden

The aim of this paper is to find the best representation for the appearance of surfaces with Lambertian reflectance under varying illumination. Previous work using principal component analysis (PCA) found the best sub-space to represent all images of an object under a varying point light source. We extend this to images from any illumination distribution. Specifically we calculate the bases for all configurations of a point plus ambient light source and two point light sources, as well as from a database of captured real world illumination. We also reformulate the optimization criterion used in PCA. The resulting basis, we believe has higher representability and is better for analyzing images of shaded objects. The different bases are compared on a database of images to test the representability.

关键词： Lighting Light sources computer vision Principal component analysis Power harmonic filters Reflectivity Image databases Image analysis Jacobian matrices Low pass filters

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Many-to-many matching of scale-space feature hierarchies using metric embedding

Many-to-many matching of scale-space feature hierarchies usi...

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4th International Conference on Scale Space Methods in computer vision, Scale Space 2003

作者： Fatih Demirci, M. Shokoufandeh, Ali Keselman, Yakov Dickinson, Sven Bretzner, Lars Department of Computer Science Drexel University PhiladelphiaPA19104 United States School of Computer Science Telecommunications and Information Systems DePaul University ChicagoIL60604 United States Department of Computer Science University of Toronto TorontoONM5S 3G4 Canada Computational Vision and Active Perception Laboatory Department of Numerical Analysis and Computer Science KTH Stockholm Sweden

ISBN: (纸本)354040368X

Scale-space feature hierarchies can be conveniently represented as graphs, in which edges are directed from coarser features to finer features. Consequently, feature matching (or view-based object matching) can be formulated as graph matching. Most approaches to graph matching assume a one-to-one correspondence between nodes (features) which, due to noise, scale discretization, and feature extraction errors, is overly restrictive. In general, a subset of features in one hierarchy, representing an abstraction of those features, may best match a subset of features in another. We present a framework for the many-tomany matching of multi-scale feature hierarchies, in which features and their relations are captured in a vertex-labeled, edge-weighted graph. The matching algorithm is based on a metric-tree representation of labeled graphs and their low-distortion metric embedding into normed vector spaces. This two-step transformation reduces the many-to-many graph matching problem to that of computing a distribution-based distance measure between two such embeddings. To compute the distance between two sets of embedded, weighted vectors, we use the Earth Mover’s Distance under transformation. To demonstrate the approach, we target the domain of multi-scale, qualitative shape description, in which an image is decomposed into a set of blobs and ridges with automatic scale selection. We conduct an extensive set of view-based matching trials, and compare the results favorably to matching under a one-to-one assumption. © Springer-Verlag Berlin Heidelberg 2003.

关键词： Trees (mathematics)

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Hand gesture recognition using multi-scale colour features, hierarchical models and particle filtering

Hand gesture recognition using multi-scale colour features, ...

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International Conference on Automatic Face and Gesture Recognition

作者： L. Bretzner I. Laptev T. Lindeberg Dept of Numerical Anal. & Comput. Sci. KTH Stockholm Sweden Department of Numerical Analysis and Computing Science Computational Vision and Active Perception Laboratory Stockholm Sweden

This paper presents algorithms and a prototype system for hand tracking and hand posture recognition. Hand postures are represented in terms of hierarchies of multi-scale colour image features at different scales, with qualitative inter-relations in terms of scale, position and orientation. In each image, detection of multi-scale colour features is performed. Hand states are then simultaneously detected and tracked using particle filtering, with an extension of layered sampling referred to as hierarchical layered sampling. Experiments are presented showing that the performance of the system is substantially improved by performing feature detection in colour space and including a prior with respect to skin colour. These components have been integrated into a real-time prototype system, applied to a test problem of controlling consumer electronics using hand gestures. In a simplified demo scenario, this system has been successfully tested by participants at two fairs during 2001.

关键词： Filtering Prototypes Image sampling Electronic equipment testing System testing Particle tracking computer vision Skin Real time systems Control systems

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