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Distributed and networked analysis of volumetric image data for remote collaboration of microscopy image analysis

Journal of Medical Imaging 2025年第2期12卷 024001页

作者： Chen, Alain Han, Shuo Lee, Soonam Fu, Chichen Yang, Changye Wu, Liming Winfree, Seth Dunn, Kenneth W. Salama, Paul Delp, Edward J. Purdue University School of Electrical and Computer Engineering Video and Image Processing Laboratory West LafayetteIN United States National Institute of Allergy and Infectious Diseases Rocky Mountain Laboratories HamiltonMT United States Indiana University School of Medicine IndianapolisIN United States Purdue University at Indianapolis School of Electrical and Computer Engineering IndianapolisIN United States

Purpose: The advancement of high-content optical microscopy has enabled the acquisition of very large three-dimensional (3D) image datasets. The analysis of these image volumes requires more computational resources than a biologist may have access to in typical desktop or laptop computers. This is especially true if machine learning tools are being used for image analysis. With the increased amount of data analysis and computational complexity, there is a need for a more accessible, easy-to-use, and efficient network-based 3D image processing system. The distributed and networked analysis of volumetric image data (DINAVID) system was developed to enable remote analysis of 3D microscopy images for biologists. Approach: We present an overview of the DINAVID system and compare it to other tools currently available for microscopy image analysis. DINAVID is designed using open-source tools and has two main sub-systems, a computational system for 3D microscopy image processing and analysis and a 3D visualization system. Results: DINAVID is a network-based system with a simple web interface that allows biologists to upload 3D volumes for analysis and visualization. DINAVID enables the image access model of a center hosting image volumes and remote users analyzing those volumes, without the need for remote users to manage any computational resources. Conclusions: The DINAVID system, designed and developed using open-source tools, enables biologists to analyze and visualize 3D microscopy volumes remotely without the need to manage computational resources. DINAVID also provides several image analysis tools, including pre-processing and several segmentation models. © 2025 Society of Photo-Optical Instrumentation Engineers (SPIE).

关键词： Photointerpretation

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Synthetic Speech Attribution Using Self Supervised Audio Spectrogram Transformer

Synthetic Speech Attribution Using Self Supervised Audio Spe...

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IS and T International Symposium on Electronic Imaging: Media Watermarking, Security, and Forensics, MWSF 2023

作者： Yadav, Amit Kumar Singh Bartusiak, Emily R. Bhagtani, Kratika Delp, Edward J. Video & Image Processing Laboratory School of Electrical and Computer Engineering Purdue University West LafayetteIN United States

The ability to synthesize convincing human speech has become easier due to the availability of speech generation tools. This necessitates the development of forensics methods that can authenticate and attribute speech signals. In this paper, we examine a speech attribution task, which identifies the origin of a speech signal. Our proposed method known as Synthetic Speech Attribution Transformer (SSAT) converts speech signals into mel spectrograms and uses a self-supervised pretrained transformer for attribution. This transformer is pretrained on two large publicly available audio datasets: Audio Set and LibriSpeech. We finetune the pretrained transformer on three speech attribution datasets: the DARPA SemaFor Audio Attribution dataset, the ASVspoof2019 dataset, and the 2022 IEEE SP Cup dataset. SSAT achieves high closed-set accuracy on all datasets (99.8% on ASVspoof2019 dataset, 96.3% on SP Cup dataset, and 93.4% on DARPA SemaFor Audio Attribution dataset). We also investigate the method's ability to generalize to unknown speech generation methods (open-set scenario). SSAT has high performance, achieving an open-set accuracy of 90.2% on the ASVspoof2019 dataset and 88.45% on DARPA SemaFor Audio Attribution dataset. Finally, we show that our approach is robust to typical compression rates used by YouTube for speech signals. © 2023, Society for Imaging Science and Technology.

关键词： Large dataset

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Feature Correlation Aggregation: on the Path to Better Graph Neural Networks

Feature Correlation Aggregation: on the Path to Better Graph...

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2023 International Conference on Digital image Computing: Techniques and Applications, DICTA 2023

作者： Zhou, Jieming Zhang, Tong Fang, Pengfei Petersson, Lars Harandi, Mehrtash Australian National University College of Engineering and Computer Science Canberra Australia Image and Visual Representation Laboratory Epfl Lausanne Switzerland Imaging and Computer Vision Group Csiro Canberra Australia Monash University Department of Electrical and Computer Systems Engineering Melbourne Australia

ISBN: (纸本)9798350382204

Prior to the introduction of Graph Neural Networks (GNNs), modelling and analyzing irregular data, particularly graphs, was thought to be the Achilles' heel of deep learning. The core concept of GNNs is to find a representation by recursively aggregating the representations of a central node and those of its neighbor, and many GNNs' designs have demonstrated its success. However, most only focus on using the first-order information between a node and its neighbors. In this paper, we introduce a central node permutation variant function through a frustratingly simple and innocent-looking modification to the core operation of a GNN, namely the Feature cOrrelation aGgregation (FOG) module, which learns the second-order information from feature correlation between a node and its neighbors in the pipeline. By adding FOG into existing variants of GNNs, we empirically verify this second-order information complements the features generated by original GNNs across a broad set of benchmarks. A tangible boost in the model's performance is observed where the model surpasses previous state-of-the-art results by a significant margin while employing fewer parameters. e.g., 26.202% improvement on a real-world molecular dataset using graph convolutional networks. © 2023 IEEE.

关键词： Graph neural networks

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Spatial Quality Assessment of Pansharpened images Based on Gray Level Co-Occurrence Matrix 12

Spatial Quality Assessment of Pansharpened Images Based on G...

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12th Iranian/2nd International Conference on Machine vision and image processing, MVIP 2022

作者： Aghapour Maleki, Shiva Ghassemian, Hassan Tarbiat Modares University Image Processing and Information Analysis Laboratory Faculty of Electrical and Computer Engineering Tehran Iran

ISBN: (纸本)9781665412162

Assessing the quality of pansharpened images is a critical issue in order to obtain a quantitative score to represent the quality and compare the performance of different fusion methods. Most of the introduced metrics for pansharpened image quality assessment, evaluate the spectral content of the image, while in different applications of remote sensing like detection and identification of image objects, spatial quality has an important role. In the current study, a new index for spatial quality assessment is introduced that extracts gray level co-occurrence matrix (GLCM) from distorted and reference images and compares the similarities of these features. The tempere image database 2013 (TID2013) that provides reference and different types of distorted images with subjective scores of each image is used as the desired database. To solve the high computational complexity of obtaining GLCM features, the fast GLCM method is employed. In this way, 16 different features are extracted. To select the features that have the most consistency with the human visual system (HVS), the forward floating search method is used as a feature selection method and five features are obtained as the final features to form the desired index. Experimental results show the efficiency of the proposed method in determining the spatial quality of fused images compared with that of the available quality assessment metrics. © 2022 IEEE.

关键词： Remote sensing

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Self-Supervised Learning Using Nonlinear Dependence

arXiv

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arXiv 2025年

作者： Sepanj, M. Hadi Ghojogh, Benyamin Fieguth, Paul Vision and Image Processing Group Systems Design Engineering University of Waterloo ON Canada Department of Electrical and Computer Engineering University of Waterloo ON Canada

Self-supervised learning has gained significant attention in contemporary applications, particularly due to the scarcity of labeled data. While existing SSL methodologies primarily address feature variance and linear correlations, they often neglect the intricate relations between samples and the nonlinear dependencies inherent in complex data. In this paper, we introduce Correlation-Dependence Self-Supervised Learning (CDSSL), a novel framework that unifies and extends existing SSL paradigms by integrating both linear correlations and nonlinear dependencies, encapsulating sample-wise and feature-wise interactions. Our approach incorporates the Hilbert-Schmidt Independence Criterion (HSIC) to robustly capture nonlinear dependencies within a Reproducing Kernel Hilbert Space, enriching representation learning. Experimental evaluations on diverse benchmarks demonstrate the efficacy of CDSSL in improving representation quality. Copyright © 2025, The Authors. All rights reserved.

关键词： Self-supervised learning

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Supervised machine learning-based salp swarm algorithm for fault diagnosis of photovoltaic systems

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Journal of engineering and Applied Science 2024年第1期71卷 12页

作者： Hichri, Amal Hajji, Mansour Mansouri, Majdi Nounou, Hazem Bouzrara, Kais Research Unit Advanced Materials and Nanotechnologies Higher Institute of Applied Sciences and Technology of Kasserine Kairouan University Kairouan Tunisia Electrical and Computer Engineering Program Texas A&M University at Qatar Doha Qatar Laboratory of Automatic Signal and Image Processing National School of Engineers of Monastir University of Monastir Monastir5019 Tunisia

The diagnosis of faults in grid-connected photovoltaic (GCPV) systems is a challenging task due to their complex nature and the high similarity between faults. To address this issue, we propose a wrapper approach called the salp swarm algorithm (SSA) for feature selection. The main objective of SSA is to extract only the most important features from the raw data and eliminate unnecessary ones to improve the classification accuracy of supervised machine learning (SML) classifiers. Subsequently, the selected features are used to train supervised machine learning (SML) techniques in distinguishing between various operating modes. To evaluate the efficiency of the technique, we used healthy and faulty data from GCPV systems that have been injected with frequent faults, 20 different types of faults were introduced, including line-to-line, line-to-ground, connectivity faults, and those affecting the operation of bay-pass diodes. These faults present diverse conditions, such as simple and multiple faults in the PV arrays and mixed faults in both arrays. The performances of the developed SSA-SML are compared with those using principal component analysis (PCA) and kernel PCA (KPCA) based SML techniques through different criteria (i.e., accuracy, recall, precision, F1 score, and computation time). The experimental findings demonstrated that the proposed diagnosis paradigm outperformed the other techniques and achieved a high diagnostic accuracy (an average accuracy greater than 99%) while significantly reducing computation time. © 2023, The Author(s).

关键词： Failure analysis

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Learning Probabilistic Coordinate Fields for Robust Correspondences

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IEEE Transactions on Pattern Analysis and Machine Intelligence 2023年第10期45卷 12004-12021页

作者： Zhao, Weiyue Lu, Hao Ye, Xinyi Cao, Zhiguo Li, Xin Huazhong University of Science and Technology The Key Laboratory of Image Processing and Intelligent Control Ministry of Education School of Artificial Intelligence and Automation Wuhan430074 China West Virginia University The Lane Department of Computer Science and Electrical Engineering MorgantownWV26506-6109 United States

We introduce Probabilistic Coordinate Fields (PCFs), a novel geometric-invariant coordinate representation for image correspondence problems. In contrast to standard Cartesian coordinates, PCFs encode coordinates in correspondence-specific barycentric coordinate systems (BCS) with affine invariance. To know when and where to trust the encoded coordinates, we implement PCFs in a probabilistic network termed PCF-Net, which parameterizes the distribution of coordinate fields as Gaussian mixture models. By jointly optimizing coordinate fields and their confidence conditioned on dense flows, PCF-Net can work with various feature descriptors when quantifying the reliability of PCFs by confidence maps. An interesting observation of this work is that the learned confidence map converges to geometrically coherent and semantically consistent regions, which facilitates robust coordinate representation. By delivering the confident coordinates to keypoint/feature descriptors, we show that PCF-Net can be used as a plug-in to existing correspondence-dependent approaches. Extensive experiments on both indoor and outdoor datasets suggest that accurate geometric invariant coordinates help to achieve the state of the art in several correspondence problems, such as sparse feature matching, dense image registration, camera pose estimation, and consistency filtering. Further, the interpretable confidence map predicted by PCF-Net can also be leveraged to other novel applications from texture transfer to multi-homography classification. © 1979-2012 IEEE.

关键词： image registration

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Effective uncertain fault diagnosis technique for wind conversion systems using improved ensemble learning algorithm

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Energy Reports 2023年 10卷 3113-3124页

作者： Attouri, Khadija Dhibi, Khaled Mansouri, Majdi Hajji, Mansour Bouzrara, Kais Nounou, Mohamed Higher Institute of Applied Sciences and Technology of Kasserine Kairouan University Kasserine1200 Tunisia Electrical and Computer Engineering Program Texas A&M University at Qatar Qatar Chemical Engineering Program Texas A&M University at Qatar Qatar Laboratory of Automatic Signal and Image Processing National Engineering School of Monastir University of Monastir 5019 Tunisia

This paper introduces a pioneering fault diagnosis technique termed Interval Ensemble Learning based on Sine Cosine Optimization Algorithm (IEL- SCOA), tailored to tackle uncertainties prevalent in wind energy conversion (WEC) systems. The approach unfolds in three integral phases. Firstly, the establishment of interval centers and ranges, employing upper and lower bounds, effectively manages the inherent uncertainties arising from noise and measurement errors intrinsic to the wind system. Subsequently, the dataset undergoes processing via the Sine-Cosine Optimization Algorithm (SCOA), enabling the extraction of the most pertinent attributes. The culmination of predictive precision and classification performance is achieved through the integration of the refined dataset into an ensemble learning paradigm, harmonizing bagging, boosting techniques, and an artificial neural network classifier. The principal aim of the IEL-SCOA approach is to discern the spectrum of operational conditions within WEC systems, encompassing a healthy mode alongside six distinct faulty modes. These anomalies, encompassing short circuits, open circuits, and wear-out incidents, are deliberately induced at diverse locations and facets of the system, notably the generator and grid sides. Empirical results underscore the robustness and efficiency of the proposed methodology, showcasing an exceptional accuracy rate of 99.76 %. These outcomes definitively establish the IEL-SCOA approach as a potent and efficacious tool for precise fault diagnosis in uncertain WEC systems. © 2023

关键词： Fault detection

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Machine learning predicts long-term mortality after acute myocardial infarction using systolic time intervals and routinely collected clinical data

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Intelligent Medicine 2024年第3期4卷 170-176页

作者： Bijan Roudini Boshra Khajehpiri Hamid Abrishami Moghaddam Mohamad Forouzanfar Department of Systems Engineering School of Advanced TechnologyUniversity of QuebecMontrealCanada Machine Vision and Medical Image Processing(MVMIP)Laboratory Faculty of Electrical and Computer EngineeringK.N.Toosi University of TechnologyTehranIran Research Center of the Montreal University Institute of Geriatrics MontrealCanada

Background Precise estimation of current and future comorbidities of patients with cardiovascular disease is an important factor in prioritizing continuous physiological monitoring and new *** learning(ML)models have shown satisfactory performance in short-term mortality prediction in patients with heart disease,whereas their utility in long-term predictions is *** study aimed to investigate the performance of tree-based ML models on long-term mortality prediction and effect of two recently introduced biomarkers on long-term *** This study used publicly available data from the Collaboration Center of Health Information Appli-cation at the Ministry of Health and Welfare,Taiwan,*** collected data were from patients admitted to the cardiac care unit for acute myocardial infarction(AMI)between November 2003 and September *** collected and analyzed mortality data up to December *** records were used to gather demo-graphic and clinical data,including age,gender,body mass index,percutaneous coronary intervention status,and comorbidities such as hypertension,dyslipidemia,ST-segment elevation myocardial infarction,and non-ST-segment elevation myocardial *** the data,collected from 139 patients with AMI,from medical and demographic records as well as two recently introduced biomarkers,brachial pre-ejection period(bPEP)and brachial ejection time(bET),we investigated the performance of advanced ensemble tree-based ML algorithms(random forest,AdaBoost,and XGBoost)to predict all-cause mortality within 14 years.A nested cross-validation was performed to evaluate and compare the performance of our developed models precisely with that of the conventional logistic regression(LR)as the baseline *** The developed ML models achieved significantly better performance compared to the baseline LR(C-Statistic,0.80 for random forest,0.79 for AdaBoost,and 0.78 for XGBoost,vs.0.77 for LR)(PRF<0.001,PAdaBoost<0.001,a

关键词： Electrocardiogram Predication Mortality prediction Machine learning

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Illumination Correction for Unsupervised Person Re-Identification

Illumination Correction for Unsupervised Person Re-Identific...

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IEEE Southwest Symposium on image Analysis and Interpretation

作者： Jiaqi Guo Amy R. Reibman Edward J. Delp Video and Image Processing Laboratory School of Electrical and Computer Engineering Purdue University West Lafayette Indiana USA

Unsupervised person re-identification (re-ID) aims to learn identity information from a source domain (e.g. one surveillance system) and apply it to a target domain (e.g. a different surveillance system). This is challenging due to occlusion, viewpoint, and illumination variations between the different domains (i.e. systems). In this paper, we propose a neural network architecture, known as Synthetic Model Bank (SMB), to address illumination variation in unsupervised person re-ID. The basic idea of SMB is to use synthetic data for training different re-ID models for different illumination conditions. From our experiments, the proposed SMB outperforms other synthetic augmentation methods on several re-ID benchmarks.

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