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Lecture Notes in computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics) 2004年 3316卷 V-VI页

作者： Pal, Nikhil R. Kasabov, Nikola Mudi, Rajani K. Pal, Srimanta Parui, Swapan K. Indian Statistical Institute Electronics and Communications Sciences Unit 203 B. T. Road Calcutta India Private Bag 92006 Auckland New Zealand Jadavpur University Department of Instrumentation and Electronics Engineering Salt-lake Campus Calcutta India Indian Statistical Institute Computer Vision and Pattern Recognition Unit 203 B. T. Road Calcutta India

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REFUGE2 CHALLENGE: A TREASURE TROVE FOR MULTI-DIMENSION ANALYSIS AND EVALUATION IN GLAUCOMA SCREENING

arXiv

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arXiv 2022年

作者： Fang, Huihui Li, Fei Wu, Junde Fu, Huazhu Sun, Xu Son, Jaemin Yu, Shuang Zhang, Menglu Yuan, Chenglang Bian, Cheng Lei, Baiying Zhao, Benjian Xu, Xinxing Li, Shaohua Fumero, Francisco Sigut, José Almubarak, Haidar Bazi, Yakoub Guo, Yuanhao Zhou, Yating Baid, Ujjwal Innani, Shubham Guo, Tianjiao Yang, Jie Orlando, José Ignacio Bogunović, Hrvoje Zhang, Xiulan Xu, Yanwu The REFUGE2 Challenge Australia State Key Laboratory of Ophthalmology Zhongshan Ophthalmic Center Sun Yat-Sen University Guangdong Provincial Key Laboratory of Ophthalmology and Visual Science Guangzhou China Intelligent Healthcare Unit Baidu Inc. Beijing China The Institute of High Performance Computing Agency for Science Technology and Research Singapore Yatiris Group PLADEMA Institute CONICET UNICEN Tandil Argentina Christian Doppler Lab for Artificial Intelligence in Retina Department of Ophthalmology and Optometry Medical University of Vienna Vienna Austria VUNO Inc Seoul Korea Republic of Tencent HealthCare Tencent Shenzhen China Computer Vision Institute College of Computer Science and Software Engineering of Shenzhen University Shenzhen China School of Biomedical Engineering Health Science Center Shenzhen University China Xiaohe Healthcare ByteDance Guangdong Guangzhou510000 China School of Biomedical Engineering Shenzhen University China College of Computer Science & Software Engineering Shenzhen University China Department of Computer Science and Systems Engineering Universidad de La Laguna Spain Saudi Electronic University Saudi Arabia King Saud University Saudi Arabia Institute of Automation Chinese Academy of Sciences Beijing China University of Chinese Academy of Sciences Beijing China SGGS Institute of Engineering and Technology India Institute of Medical Robotics Shanghai Jiao Tong University China Institute of Image Processing and Pattern Recognition Shanghai Jiao Tong University China

With the rapid development of artificial intelligence (AI) in medical image processing, deep learning in color fundus photography (CFP) analysis is also evolving. Although there are some open-source, labeled datasets of CFPs in the ophthalmology community, large-scale datasets for screening only have labels of disease categories, and datasets with annotations of fundus structures are usually small in size. In addition, labeling standards are not uniform across datasets, and there is no clear information on the acquisition device. Here we release a multi-annotation, multi-quality, and multi-device color fundus image dataset for glaucoma analysis on an original challenge-Retinal Fundus Glaucoma Challenge 2nd Edition (REFUGE2). The REFUGE2 dataset contains 2000 color fundus images with annotations of glaucoma classification, optic disc/cup segmentation, as well as fovea localization. Meanwhile, the REFUGE2 challenge sets three sub-tasks of automatic glaucoma diagnosis and fundus structure analysis and provides an online evaluation framework. Based on the characteristics of multi-device and multi-quality data, some methods with strong generalizations are provided in the challenge to make the predictions more robust. This shows that REFUGE2 brings attention to the characteristics of real-world multi-domain data, bridging the gap between scientific research and clinical application. © 2022, CC BY-NC-ND.

关键词： Color

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NTIRE 2022 Challenge on Stereo Image Super-Resolution: Methods and Results

arXiv

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arXiv 2022年

作者： Guo, Yulan Wang, Longguang Wang, Yingqian Li, Juncheng Gu, Shuhang Timofte, Radu Chen, Liangyu Chu, Xiaojie Yu, Wenqing Jin, Kai Wei, Zeqiang Guo, Sha Yang, Angulia Zhou, Xiuzhuang Guo, Guodong Xiao, Huaxin Yan, Shen Liu, Yuxiang Cai, Hanxiao Dai, Bin Peng, Feiyue Cao, Pu Nie, Yang Yang, Lu Song, Qing Hu, Xiaotao Xu, Jun Xu, Mai Jing, Junpeng Deng, Xin Xing, Qunliang Qiao, Minglang Guan, Zhenyu Guo, Wenlong Peng, Chenxu Chen, Zan Chen, Junyang Li, Hao Chen, Junbin Li, Weijie Yang, Zhijing Li, Gen Li, Aijin Sun, Lei Zhang, Dafeng Liu, Shizhuo Zhang, Jiangtao Qu, Yanyun Yang, Hao-Hsiang Huang, Zhi-Kai Chen, Wei-Ting Chang, Hua-En Kuo, Sy-Yen Liang, Qiaohui Lin, Jianxin Wang, Yijun Yin, Lianying Zhang, Rongju Zhao, Wei Xiao, Peng Xu, Rongjian Zhang, Zhilu Zuo, Wangmeng Guo, Hansheng Gao, Guangwei Zeng, Tieyong Kim, Joohyeok Kim, HyeonA Park, Eunpil Sim, Jae-Young Pi, Huicheng Zhang, Shunli Zhai, Jucai Zeng, Pengcheng Liu, Yang Ma, Chihao Huang, Yulin Chen, Junying National University of Defense Technology China The Chinese University of Hong Kong Hong Kong The University of Sydney Australia University of Würzburg ETH Zürich Switzerland MEGVII Technology China Peking University China Bigo Technology Pte. Ltd Singapore Smart Healthcare Innovation Lab Beijing University of Posts and Telecommunications China School of Artificial Intelligence Beijing University of Posts and Telecommunications China Head of Institute of Deep Learning Baidu Research College of Systems Engineering National University of Defense Technology China College of Liberal Arts and Sciences National University of Defense Technology China Pattern Recognition and Intelligent Vision Lab Beijing University of Posts and Telecommunications China College of Computer Science Nankai University Tianjin China School of Statistics and Data Science Nankai University Tianjin Singapore Beihang University China Zhejiang University of Technology China Guangdong University of Technology China Tencent OVBU SRC-B Xiamen University China Department of Electrical Engineering National Taiwan University Taiwan Graduate Institute of Electronics Engineering National Taiwan University Taiwan College of Computer Science and Electronic Engineering Hunan University China Harbin Institude of Technology China The Chinese University of Hong Kong Hong Kong Nanjing University of Posts and Telecommunications China Department of Electrical Engineering Ulsan National Institute of Science and Technology Korea Republic of Graduate School of Artificial Intelligence Ulsan National Institute of Science and Technology Korea Republic of Beijing Jiaotong University China City University of Hong Kong Hong Kong South China University of Technology China

In this paper, we summarize the 1st NTIRE challenge on stereo image super-resolution (restoration of rich details in a pair of low-resolution stereo images) with a focus on new solutions and results. This challenge has 1 track aiming at the stereo image super-resolution problem under a standard bicubic degradation. In total, 238 participants were successfully registered, and 21 teams competed in the final testing phase. Among those participants, 20 teams successfully submitted results with PSNR (RGB) scores better than the baseline. This challenge establishes a new benchmark for stereo image SR. Copyright © 2022, The Authors. All rights reserved.

关键词： Stereo image processing

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AIFORCOVID: Predicting the clinical outcomes in patients with COVID-19 applying AI to chest-X-rays. an Italian multicentre study

arXiv

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arXiv 2020年

作者： Soda, Paolo D’Amico, Natascha Claudia Tessadori, Jacopo Valbusa, Giovanni Guarrasi, Valerio Bortolotto, Chandra Akbar, Muhammad Usman Sicilia, Rosa Cordelli, Ermanno Fazzini, Deborah Cellina, Michaela Oliva, Giancarlo Callea, Giovanni Panella, Silvia Cariati, Maurizio Cozzi, Diletta Miele, Vittorio Stellato, Elvira Carrafiello, Gian Paolo Castorani, Giulia Simeone, Annalisa Preda, Lorenzo Iannello, Giulio Bue, Alessio Del Tedoldi, Fabio Alì, Marco Sona, Diego Papa, Sergio Unit of Computer Systems and Bioinformatics Department of Engineering University Campus Bio-Medico of Rome Via Alvaro del Portillo 21 Rome00128 Italy Department of Diagnostic Imaging and Stereotactic Radiosurgey Centro Diagnostico Italiano S.p.A. Via S. Saint Bon 20 Milan20147 Italy Pattern Analysis and Computer Vision Istituto Italiano di Tecnologia Via Morego 30 Genoa16163 Italy Bracco Imaging S.p.A. Via Caduti di Marcinelle 13 Milan20134 Italy Department of Computer Control and Management Engineering Sapienza University of Rome Via Ariosto 25 Rome00185 Italy Radiology Institute Fondazione IRCCS Policlinico San Matteo Viale Golgi 19 Pavia27100 Italy Department of Naval Electrical Electronic and Telecommunications Engineering - University of Genova Via All’Opera Pia 11 A Genoa16145 Italy Radiology Department ASST Fatebenefratelli Sacco Piazza Principessa Clotilde 3 Milan20121 Italy Diagnostic and interventional radiology unit ASST Santi Paolo e Carlo - San Paolo Hospital Via Antonio di Rudinì 8 Milan20142 Italy Department of Advanced Diagnostic Technologies - Therapeutic Diagnostic and Radiology Units ASST Santi Paolo e Carlo - San Paolo Hospital Via Antonio di Rudinì 8 Milan20142 Italy Department of Emergency Radiology Careggi University Hospital Largo Piero Palagi 1 Florence50139 Italy Operative Unit of Radiology Fondazione IRCCS Ca’ Granda Ospedale Maggiore Policlinico of Milan Via della Commenda 10 Milan20122 Italy Department of Health Sciences Univeristy of Milan Via Festa del Perdono 7 Milan20122 Italy Diagnostic Imaging Postgraduate Medical School University of Foggia Via Antonio Gramsci 89 Foggia71122 Italy Department of Diagnostic Imaging IRCCS Ospedale Casa Sollievo della Sofferenza Viale Cappuccini 1 San Giovanni Rotondo71013 Italy Radiology Unit Department of Clinical Surgical Diagnostic and Pediatric Sciences University of Pavia Corso Str. Nuova 65 Pavia27100 Italy Neuroinformatics Laboratory Fondazione Bru

Recent epidemiological data report that worldwide more than 53 million people have been infected by SARS-CoV-2, resulting in 1.3 million deaths. The disease has been spreading very rapidly and few months after the identification of the first infected, shortage of hospital resources quickly became a problem. In this work we investigate whether chest X-ray (CXR) can be used as a possible tool for the early identification of patients at risk of severe outcome, like intensive care or death. CXR is a radiological technique that compared to computed tomography (CT) it is simpler, faster, more widespread and it induces lower radiation dose. We present a dataset including data collected from 820 patients by six Italian hospitals in spring 2020 during the first COVID-19 emergency. The dataset includes CXR images, several clinical attributes and clinical outcomes. We investigate the potential of artificial intelligence to predict the prognosis of such patients, distinguishing between severe and mild cases, thus offering a baseline reference for other researchers and practitioners. To this goal, we present three approaches that use features extracted from CXR images, either handcrafted or automatically by convolutional neuronal networks, which are then integrated with the clinical data. Exhaustive evaluation shows promising performance both in 10-fold and leave-one-centre-out cross-validation, implying that clinical data and images have the potential to provide useful information for the management of patients and hospital resources. © 2020, CC BY-NC-ND.

关键词： Deep learning

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Corrigendum to "Addressing docking pose selection with structure-based deep learning: Recent advances, challenges and opportunities" [Comput Struct Biotechnol J vol. 23 (2024) 2141-2151]

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Computational and structural biotechnology journal 2024年 23卷 2963页

作者： Serena Vittorio Filippo Lunghini Pietro Morerio Davide Gadioli Sergio Orlandini Paulo Silva Jan Martinovic Alessandro Pedretti Domenico Bonanni Alessio Del Bue Gianluca Palermo Giulio Vistoli Andrea R Beccari Dipartimento di Scienze Farmaceutiche Università degli Studi di Milano Via Luigi Mangiagalli 25 I-20133 Milano Italy. EXSCALATE Dompé Farmaceutici SpA Via Tommaso de Amicis 95 80123 Naples Italy. Pattern Analysis and Computer Vision Fondazione Istituto Italiano di Tecnologia Via Morego 30 16163 Genova Italy. Dipartimento di Elettronica Informazione e Bioingegneria Politecnico di Milano Via Ponzio 34/5 I-20133 Milano Italy. SCAI SuperComputing Applications and Innovation Department CINECA Via dei Tizii 6 Rome 00185 Italy. IT4Innovations VSB - Technical University of Ostrava 17. listopadu 2172/15 708 00 Ostrava-Poruba Czech Republic. Department of Physical and Chemical Sciences University of L'Aquila via Vetoio L'Aquila 67010 Italy.

[This corrects the article DOI: 10.1016/***.2024.05.024.].

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The Liver Tumor Segmentation Benchmark (LiTS)

arXiv

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arXiv 2019年

作者： Bilic, Patrick Christ, Patrick Li, Hongwei Bran Vorontsov, Eugene Ben-Cohen, Avi Kaissis, Georgios Szeskin, Adi Jacobs, Colin Mamani, Gabriel Efrain Humpire Chartrand, Gabriel Lohöfer, Fabian Holch, Julian Walter Sommer, Wieland Hofmann, Felix Hostettler, Alexandre Lev-Cohain, Naama Drozdzal, Michal Amitai, Michal Marianne Vivanti, Refael Sosna, Jacob Ezhov, Ivan Sekuboyina, Anjany Navarro, Fernando Kofler, Florian Paetzold, Johannes C. Shit, Suprosanna Hu, Xiaobin Lipková, Jana Rempfler, Markus Piraud, Marie Kirschke, Jan Wiestler, Benedikt Zhang, Zhiheng Hülsemeyer, Christian Beetz, Marcel Ettlinger, Florian Antonelli, Michela Bae, Woong Bellver, Míriam Bi, Lei Chen, Hao Chlebus, Grzegorz Dam, Erik B. Dou, Qi Fu, Chi-Wing Georgescu, Bogdan Giró-I-Nieto, Xavier Gruen, Felix Han, Xu Heng, Pheng-Ann Hesser, Jürgen Moltz, Jan Hendrik Igel, Christian Isensee, Fabian Jäger, Paul Jia, Fucang Kaluva, Krishna Chaitanya Khened, Mahendra Kim, Ildoo Kim, Jae-Hun Kim, Sungwoong Kohl, Simon Konopczynski, Tomasz Kori, Avinash Krishnamurthi, Ganapathy Li, Fan Li, Hongchao Li, Junbo Li, Xiaomeng Lowengrub, John Ma, Jun Maier-Hein, Klaus Maninis, Kevis-Kokitsi Meine, Hans Merhof, Dorit Pai, Akshay Perslev, Mathias Petersen, Jens Pont-Tuset, Jordi Qi, Jin Qi, Xiaojuan Rippel, Oliver Roth, Karsten Sarasua, Ignacio Schenk, Andrea Shen, Zengming Torres, Jordi Wachinger, Christian Wang, Chunliang Weninger, Leon Wu, Jianrong Xu, Daguang Yang, Xiaoping Yu, Simon Chun-Ho Yuan, Yading Yue, Miao Zhang, Liping Cardoso, Jorge Bakas, Spyridon Braren, Rickmer Heinemann, Volker Pal, Christopher Tang, An Kadoury, Samuel Soler, Luc van Ginneken, Bram Greenspan, Hayit Joskowicz, Leo Menze, Bjoern Department of Informatics Technical University of Munich Germany Department of Quantitative Biomedicine University of Zurich Switzerland Ecole Polytechnique de Montréal Canada Department of Medical Imaging Radboud University Medical Center Nijmegen Netherlands Department of Biomedical Engineering Tel-Aviv University Israel Germany Pattern Analysis and Learning Group Department of Radiation Oncology Heidelberg University Hospital Heidelberg Germany Philips Research China Philips China Innovation Campus Shanghai China School of Biomedical Engineering & Imaging Sciences King0s College London London United Kingdom Institute for AI in Medicine Technical University of Munich Germany Department of Computer Science Guangdong University of Foreign Studies China Institute for diagnostic and interventional radiology Klinikum rechts der Isar Technical University of Munich Germany Institute for Diagnostic and Interventional Neuroradiology Klinikum Rechts der Isar Technical University of Munich Germany Department of Hepatobiliary Surgery The Affiliated Drum Tower Hospital Nanjing University Medical School China Department of Computing Imperial College London London United Kingdom Institute for Tissue Engineering and Regenerative Medicine Helmholtz Zentrum München Neuherberg Germany Brigham and Women's Hospital Harvard Medical School United States School of Computer Science and Engineering The Hebrew University of Jerusalem Israel University of Pennsylvania PA United States Pte. Ltd. Singapore Medical Imaging and Reconstruction Lab Department of Engineering Design Indian Institute of Technology Madras India Sensetime Shanghai China Department of Radiology Perelman School of Medicine University of Pennsylvania United States Department of Pathology and Laboratory Medicine Perelman School of Medicine University of Pennsylvania PA United States Co. Ltd China MontréalQC Canada Department of Radiology Radiation Oncology and Nuclear Medicine University of Montréal

In this work, we report the set-up and results of the Liver Tumor Segmentation Benchmark (LiTS), which was organized in conjunction with the IEEE International Symposium on Biomedical Imaging (ISBI) 2017 and the International Conferences on Medical Image Computing and computer-Assisted Intervention (MICCAI) 2017 and 2018. The image dataset is diverse and contains primary and secondary tumors with varied sizes and appearances with various lesion-to-background levels (hyper-/hypo-dense), created in collaboration with seven hospitals and research institutions. Seventy-five submitted liver and liver tumor segmentation algorithms were trained on a set of 131 computed tomography (CT) volumes and were tested on 70 unseen test images acquired from different patients. We found that not a single algorithm performed best for both liver and liver tumors in the three events. The best liver segmentation algorithm achieved a Dice score of 0.963, whereas, for tumor segmentation, the best algorithms achieved Dices scores of 0.674 (ISBI 2017), 0.702 (MICCAI 2017), and 0.739 (MICCAI 2018). Retrospectively, we performed additional analysis on liver tumor detection and revealed that not all top-performing segmentation algorithms worked well for tumor detection. The best liver tumor detection method achieved a lesion-wise recall of 0.458 (ISBI 2017), 0.515 (MICCAI 2017), and 0.554 (MICCAI 2018), indicating the need for further research. LiTS remains an active benchmark and resource for research, e.g., contributing the liver-related segmentation tasks in http://***/. In addition, both data and online evaluation are accessible via ***. © 2019, CC BY-NC-ND.

关键词： Deep learning

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Author Correction: Development and clinical deployment of a smartphone-based visual field deep learning system for glaucoma detection

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NPJ digital medicine 2022年第1期5卷 38页

作者： Fei Li Diping Song Han Chen Jian Xiong Xingyi Li Hua Zhong Guangxian Tang Sujie Fan Dennis S C Lam Weihua Pan Yajuan Zheng Ying Li Guoxiang Qu Junjun He Zhe Wang Ling Jin Rouxi Zhou Yunhe Song Yi Sun Weijing Cheng Chunman Yang Yazhi Fan Yingjie Li Hengli Zhang Ye Yuan Yang Xu Yunfan Xiong Lingfei Jin Aiguo Lv Lingzhi Niu Yuhong Liu Shaoli Li Jiani Zhang Linda M Zangwill Alejandro F Frangi Tin Aung Ching-Yu Cheng Yu Qiao Xiulan Zhang Daniel S W Ting State Key Laboratory of Ophthalmology Zhongshan Ophthalmic Center Sun Yat-Sen University Guangzhou People's Republic of China. ShenZhen Key Lab of Computer Vision and Pattern Recognition Shenzhen Institutes of Advanced Technology The Chinese Academy of Sciences Shenzhen People's Republic of China. University of Chinese Academy of Sciences Beijing People's Republic of China. Department of Ophthalmology The First Affiliated Hospital of Kunming Medical University Kunming People's Republic of China. The First Hospital of Shijiazhuang City Shijiazhuang People's Republic of China. gxtykyy@***. Handan City Eye Hospital Handan People's Republic of China. C-MER (Shenzhen) Dennis Lam Eye Hospital International Eye Research Institute of The Chinese University of Hong Kong (Shenzhen) Shenzhen People's Republic of China. The Eye Hospital WMU at Hangzhou Hangzhou People's Republic of China. Department of Ophthalmology The Second Hospital of Jilin University Changchun People's Republic of China. SenseTime Group Limited Hong Kong People's Republic of China. Department of Ophthalmology The Second Affiliated Hospital of Guizhou Medical University Kaili People's Republic of China. Department of Ophthalmology The Second Affiliated Hospital of Xi'an Jiaotong University Xi'an People's Republic of China. Department of Ophthalmology The Third Affiliated Hospital of Nanchang University Nanchang People's Republic of China. The First Hospital of Shijiazhuang City Shijiazhuang People's Republic of China. Hamilton Glaucoma Center Shiley Eye Institute Viterbi Family Department of Ophthalmology UC San Diego La Jolla CA United States. CISTIB Center for Computational Imaging and Simulation Technologies in Biomedicine Schools of Computing and Medicine University of Leeds Leeds UK. Singapore Eye Research Institute and Singapore National Eye Centre Singapore Singapore. ShenZhen Key Lab of Computer Vision and Pattern Recognition Shenzhen Institutes of Advanced Technology The Chinese Academy of Sci

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Understanding metric-related pitfalls in image analysis validation

arXiv

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arXiv 2023年

作者： Reinke, Annika Tizabi, Minu D. Baumgartner, Michael Eisenmann, Matthias Heckmann-Nötzel, Doreen Kavur, A. Emre Rädsch, Tim Sudre, Carole H. Acion, Laura Antonelli, Michela Arbel, Tal Bakas, Spyridon Benis, Arriel Blaschko, Matthew B. Buettner, Florian Cardoso, M. Jorge Cheplygina, Veronika Chen, Jianxu Christodoulou, Evangelia Cimini, Beth A. Collins, Gary S. Farahani, Keyvan Ferrer, Luciana Galdran, Adrian van Ginneken, Bram Glocker, Ben Godau, Patrick Haase, Robert Hashimoto, Daniel A. Hoffman, Michael M. Huisman, Merel Isensee, Fabian Jannin, Pierre Kahn, Charles E. Kainmueller, Dagmar Kainz, Bernhard Karargyris, Alexandros Karthikesalingam, Alan Kenngott, Hannes Kleesiek, Jens Kofler, Florian Kooi, Thijs Kopp-Schneider, Annette Kozubek, Michal Kreshuk, Anna Kurc, Tahsin Landman, Bennett A. Litjens, Geert Madani, Amin Maier-Hein, Klaus Martel, Anne L. Mattson, Peter Meijering, Erik Menze, Bjoern Moons, Karel G.M. Müller, Henning Nichyporuk, Brennan Nickel, Felix Petersen, Jens Rafelski, Susanne M. Rajpoot, Nasir Reyes, Mauricio Riegler, Michael A. Rieke, Nicola Saez-Rodriguez, Julio Sánchez, Clara I. Shetty, Shravya Summers, Ronald M. Taha, Abdel A. Tiulpin, Aleksei Tsaftaris, Sotirios A. van Calster, Ben Varoquaux, Gaël Yaniv, Ziv R. Jäger, Paul F. Maier-Hein, Lena Faculty of Mathematics and Computer Science Heidelberg University Heidelberg Germany Heidelberg Division of Intelligent Medical Systems Germany NCT Heidelberg A Partnership Between DKFZ University Medical Center Heidelberg Germany Heidelberg Division of Medical Image Computing Germany Heidelberg Division of Intelligent Medical Systems Germany MRC Unit for Lifelong Health and Ageing UCL Centre for Medical Image Computing Department of Computer Science University College London London United Kingdom School of Biomedical Engineering and Imaging Science King’s College London London United Kingdom Instituto de Cálculo CONICET – Universidad de Buenos Aires Buenos Aires Argentina Centre for Medical Image Computing University College London London United Kingdom McGill University Montreal Canada Division of Computational Pathology Dept of Pathology & Laboratory Medicine Indiana University School of Medicine IU Health Information and Translational Sciences Building Indianapolis United States University of Pennsylvania Richards Medical Research Laboratories FL7 PhiladelphiaPA United States Department of Digital Medical Technologies Holon Institute of Technology Holon Israel European Federation for Medical Informatics Le Mont-sur-Lausanne Switzerland Center for Processing Speech and Images Department of Electrical Engineering KU Leuven Leuven Belgium partner site Frankfurt/Mainz a partnership between DKFZ and UCT Frankfurt Marburg Germany Heidelberg Germany Goethe University Frankfurt Department of Medicine Germany Goethe University Frankfurt Department of Informatics Germany and Frankfurt Cancer Insititute Germany Department of Computer Science IT University of Copenhagen Copenhagen Denmark Leibniz-Institut für Analytische Wissenschaften – ISAS – e.V. Dortmund Germany Imaging Platform Broad Institute of MIT and Harvard CambridgeMA United States Centre for Statistics in Medicine University of Oxford Oxford United Kingdom Center for Biomedical In

Validation metrics are key for tracking scientific progress and bridging the current chasm between artificial intelligence (AI) research and its translation into practice. However, increasing evidence shows that particularly in image analysis, metrics are often chosen inadequately. While taking into account the individual strengths, weaknesses, and limitations of validation metrics is a critical prerequisite to making educated choices, the relevant knowledge is currently scattered and poorly accessible to individual researchers. Based on a multi-stage Delphi process conducted by a multidisciplinary expert consortium as well as extensive community feedback, the present work provides the first reliable and comprehensive common point of access to information on pitfalls related to validation metrics in image analysis. While focused on biomedical image analysis, the addressed pitfalls generalize across application domains and are categorized according to a newly created, domain-agnostic taxonomy. The work serves to enhance global comprehension of a key topic in image analysis validation. © 2023, CC BY.

关键词： computer vision

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Why is the Winner the Best?

Why is the Winner the Best?

引用

Conference on computer vision and pattern Recognition (CVPR)

作者： M. Eisenmann A. Reinke V. Weru M. D. Tizabi F. Isensee T. J. Adler S. Ali V. Andrearczyk M. Aubreville U. Baid S. Bakas N. Balu S. Bano J. Bernal S. Bodenstedt A. Casella V. Cheplygina M. Daum M. De Bruijne A. Depeursinge R. Dorent J. Egger D. G. Ellis S. Engelhardt M. Ganz N. Ghatwary G. Girard P. Godau A. Gupta L. Hansen K. Harada M. Heinrich N. Heller A. Hering A. Huaulmé P. Jannin A. E. Kavur O. Kodym M. Kozubek J. Li H. Li J. Ma C. Martín-Isla B. Menze A. Noble V. Oreiller N. Padoy S. Pati K. Payette T. Rädsch J. Rafael-Patiño V. Singh Bawa S. Speidel C. H. Sudre K. Van Wijnen M. Wagner D. Wei A. Yamlahi M. H. Yap C. Yuan M. Zenk A. Zia D. Zimmerer D. Aydogan B. Bhattarai L. Bloch R. Brüngel J. Cho C. Choi Q. Dou I. Ezhov C. M. Friedrich C. Fuller R. R. Gaire A. Galdran Á. García Faura M. Grammatikopoulou S. Hong M. Jahanifar I. Jang A. Kadkhodamohammadi I. Kang F. Kofler S. Kondo H. Kuijf M. Li M. Luu T. Martinčič P. Morais M. A. Naser B. Oliveira D. Owen S. Pang J. Park S. Park S. Płotka E. Puybareau N. Rajpoot K. Ryu N. Saeed A. Shephard P. Shi D. Štepec R. Subedi G. Tochon H. R. Torres H. Urien J. L. Vilaça K. A. Wahid H. Wang J. Wang L. Wang X. Wang B. Wiestler M. Wodzinski F. Xia J. Xie Z. Xiong S. Yang Y. Yang Z. Zhao K. Maier-Hein P. F. Jäger A. Kopp-Schneider L. Maier-Hein Division of Intelligent Medical Systems German Cancer Research Center (DKFZ) Heidelberg Germany Helmholtz Imaging German Cancer Research Center (DKFZ) Heidelberg Germany Faculty of Mathematics and Computer Science Heidelberg University Heidelberg Germany Division of Biostatistics German Cancer Research Center (DKFZ) Heidelberg Germany Division of Medical Image Computing German Cancer Research Center (DKFZ) Heidelberg Germany Faculty of Engineering and Physical Sciences School of Computing University of Leeds Leeds UK Institute of Informatics School of Management HES-SO Valais-Wallis University of Applied Sciences and Arts Western Switzerland Sierre Switzerland Department of Nuclear Medicine and Molecular Imaging Lausanne University Hospital Lausanne Switzerland Technische Hochschule Ingolstadt Ingolstadt Germany Center for Artificial Intelligence and Data Science for Integrated Diagnostics (AI2D) and Center for Biomedical Image Computing and Analytics (CBICA) University of Pennsylvania Philadelphia PA USA Department of Pathology and Laboratory Medicine Perelman School of Medicine University of Pennsylvania Philadelphia PA USA Department of Radiology Perelman School of Medicine University of Pennsylvania Philadelphia PA USA Department of Radiology University of Washington Seattle WA USA Department of Computer Science Wellcome/EPSRC Centre for Interventional and Surgical Sciences (WEISS) University College London London UK Universitat Autònoma de Barcelona & Computer Vision Center Barcelona Spain Division of Translational Surgical Oncology National Center for Tumor Diseases (NCT/UCC) Dresden Dresden Germany Department of Advanced Robotics Istituto Italiano di Tecnologia Italy Department of Electronics Information and Bioengineering Politecnico di Milano Milan Italy IT University of Copenhagen Copenhagen Denmark Department of General Visceral and Transplantation Surgery Heidelberg University Hospital Heidelberg Germany Department of Radiology and Nuc

International benchmarking competitions have become fundamental for the comparative performance assessment of image analysis methods. However, little attention has been given to investigating what can be learnt from these competitions. Do they really generate scientific progress? What are common and successful participation strategies? What makes a solution superior to a competing method? To address this gap in the literature, we performed a multicenter study with all 80 competitions that were conducted in the scope of IEEE ISBI 2021 and MICCAI 2021. Statistical analyses performed based on comprehensive descriptions of the submitted algorithms linked to their rank as well as the underlying participation strategies revealed common characteristics of winning solutions. These typically include the use of multi-task learning (63%) and/or multi-stage pipelines (61%), and a focus on augmentation (100%), image preprocessing (97%), data curation (79%), and post-processing (66%). The “typical” lead of a winning team is a computer scientist with a doctoral degree, five years of experience in biomedical image analysis, and four years of experience in deep learning. Two core general development strategies stood out for highly-ranked teams: the reflection of the metrics in the method design and the focus on analyzing and handling failure cases. According to the organizers, 43% of the winning algorithms exceeded the state of the art but only 11% completely solved the respective domain problem. The insights of our study could help researchers (1) improve algorithm development strategies when approaching new problems, and (2) focus on open research questions revealed by this work.

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Author Correction: Federated learning enables big data for rare cancer boundary detection

引用

Nature communications 2023年第1期14卷 436页

作者： Sarthak Pati Ujjwal Baid Brandon Edwards Micah Sheller Shih-Han Wang G Anthony Reina Patrick Foley Alexey Gruzdev Deepthi Karkada Christos Davatzikos Chiharu Sako Satyam Ghodasara Michel Bilello Suyash Mohan Philipp Vollmuth Gianluca Brugnara Chandrakanth J Preetha Felix Sahm Klaus Maier-Hein Maximilian Zenk Martin Bendszus Wolfgang Wick Evan Calabrese Jeffrey Rudie Javier Villanueva-Meyer Soonmee Cha Madhura Ingalhalikar Manali Jadhav Umang Pandey Jitender Saini John Garrett Matthew Larson Robert Jeraj Stuart Currie Russell Frood Kavi Fatania Raymond Y Huang Ken Chang Carmen Balaña Jaume Capellades Josep Puig Johannes Trenkler Josef Pichler Georg Necker Andreas Haunschmidt Stephan Meckel Gaurav Shukla Spencer Liem Gregory S Alexander Joseph Lombardo Joshua D Palmer Adam E Flanders Adam P Dicker Haris I Sair Craig K Jones Archana Venkataraman Meirui Jiang Tiffany Y So Cheng Chen Pheng Ann Heng Qi Dou Michal Kozubek Filip Lux Jan Michálek Petr Matula Miloš Keřkovský Tereza Kopřivová Marek Dostál Václav Vybíhal Michael A Vogelbaum J Ross Mitchell Joaquim Farinhas Joseph A Maldjian Chandan Ganesh Bangalore Yogananda Marco C Pinho Divya Reddy James Holcomb Benjamin C Wagner Benjamin M Ellingson Timothy F Cloughesy Catalina Raymond Talia Oughourlian Akifumi Hagiwara Chencai Wang Minh-Son To Sargam Bhardwaj Chee Chong Marc Agzarian Alexandre Xavier Falcão Samuel B Martins Bernardo C A Teixeira Flávia Sprenger David Menotti Diego R Lucio Pamela LaMontagne Daniel Marcus Benedikt Wiestler Florian Kofler Ivan Ezhov Marie Metz Rajan Jain Matthew Lee Yvonne W Lui Richard McKinley Johannes Slotboom Piotr Radojewski Raphael Meier Roland Wiest Derrick Murcia Eric Fu Rourke Haas John Thompson David Ryan Ormond Chaitra Badve Andrew E Sloan Vachan Vadmal Kristin Waite Rivka R Colen Linmin Pei Murat Ak Ashok Srinivasan J Rajiv Bapuraj Arvind Rao Nicholas Wang Ota Yoshiaki Toshio Moritani Sevcan Turk Joonsang Lee Snehal Prabhudesai Fanny Morón Jacob Mandel Konstantinos Kamnitsas Ben Glocker Luke V M Dixon Matthew Williams Peter Zamp Center for Biomedical Image Computing and Analytics (CBICA) University of Pennsylvania Philadelphia PA USA. Department of Radiology Perelman School of Medicine University of Pennsylvania Philadelphia PA USA. Department of Pathology and Laboratory Medicine Perelman School of Medicine University of Pennsylvania Philadelphia PA USA. Department of Informatics Technical University of Munich Munich Bavaria Germany. Intel Corporation Santa Clara CA USA. Department of Neuroradiology Heidelberg University Hospital Heidelberg Germany. Clinical Cooperation Unit Neuropathology German Cancer Consortium (DKTK) within the German Cancer Research Center (DKFZ) Heidelberg Germany. Department of Neuropathology Heidelberg University Hospital Heidelberg Germany. Division of Medical Image Computing German Cancer Research Center Heidelberg Germany. Pattern Analysis and Learning Group Department of Radiation Oncology Heidelberg University Hospital Heidelberg Germany. Neurology Clinic Heidelberg University Hospital Heidelberg Germany. Department of Radiology & Biomedical Imaging University of California San Francisco San Francisco CA USA. Symbiosis Center for Medical Image Analysis Symbiosis International University Pune Maharashtra India. Department of Neuroimaging and Interventional Radiology National Institute of Mental Health and Neurosciences Bangalore Karnataka India. Department of Radiology School of Medicine and Public Health University of Wisconsin Madison WI USA. Department of Medical Physics School of Medicine and Public Health University of Wisconsin Madison WI USA. Leeds Teaching Hospitals Trust Department of Radiology Leeds UK. Department of Radiology Brigham and Women's Hospital Harvard Medical School Boston MA USA. Athinoula A. Martinos Center for Biomedical Imaging Massachusetts General Hospital Charlestown MA USA. Catalan Institute of Oncology Badalona Spain. Consorci MAR Parc de Salut de Barcelona Catalonia Spain. Department of Radiology (IDI

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