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IEEE EMBS International Conference on information Technology Applications in Biomedicine (ITAB)

作者： Shun-Cheng Chang Hsin-Pei Yu Yi-Hsien Hsieh Pochuang Wang Weichung Wang Tung-Hung Su Jia-Horng Kao Che Lin Graduate Institute of Communication Engineering National Taiwan University (NTU) Taipei Taiwan Department of Computer Science and Information Engineering NTU Taipei Taiwan Institute of Applied Mathematical Sciences NTU Taipei Taiwan Department of Internal Medicine Division of Gastroenterology and Hepatology National Taiwan University Hospital Taipei Taiwan Department of Electrical Engineering NTU Taipei Taiwan Center for Advanced Computing and Imaging in Biomedicine NTU Taipei Taiwan Smart Medicine and Health Informatics Program NTU Taipei Taiwan

ISBN: (数字)9798350351552

ISBN: (纸本)9798350351569

Deep learning has revolutionized medical imaging, offering advanced methods for accurate diagnosis and treatment planning. The BCLC staging system is crucial for staging Hepatocellular Carcinoma (HCC), a high-mortality cancer. An automated BCLC staging system could significantly enhance diagnosis and treatment planning efficiency. However, we found that BCLC staging, which is directly related to the size and number of liver tumors, aligns well with the principles of the Multiple Instance Learning (MIL) framework. To effectively achieve this, we proposed a new preprocessing technique called Masked Cropping and Padding(MCP), which addresses the variability in liver volumes and ensures consistent input sizes. This technique preserves the structural integrity of the liver, facilitating more effective learning. Furthermore, we introduced Re ViT, a novel hybrid model that integrates the local feature extraction capabilities of Convolutional Neural Networks (CNNs) with the global context modeling of Vision Transformers (ViTs). Re ViT leverages the strengths of both architectures within the MIL framework, enabling a robust and accurate approach for BCLC staging. We will further explore the trade-off between performance and interpretability by employing TopK Pooling strategies, as our model focuses on the most informative instances within each bag.

关键词： Visualization Accuracy Three-dimensional displays Liver Transformers Planning Convolutional neural networks Context modeling Biomedical imaging Tumors

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MoCab: A framework for the deployment of machine learning models across health information systems

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Computer Methods and programs in Biomedicine 2024年 255卷 108336页

作者： Kuo, Zhe-Ming Chen, Kuan-Fu Tseng, Yi-Ju Department of Information Management National Central University Taoyuan Taiwan College of Intelligent Computing Chang Gung University Taoyuan Taiwan Medical Statistics Research Center Chang Gung University Taoyuan Taiwan Department of Emergency Medicine Chang Gung Memorial Hospital Keelung Taiwan Department of Computer Science National Yang Ming Chiao Tung University Hsinchu Taiwan Computational Health Informatics Program Boston Children's Hospital BostonMA United States

Background and Objective: Machine learning models are vital for enhancing healthcare services. However, integrating them into health information systems (HISs) introduces challenges beyond clinical decision making, such as interoperability and diverse electronic health records (EHR) formats. We proposed Model Cabinet Architecture (MoCab), a framework designed to leverage fast healthcare interoperability resources (FHIR) as the standard for data storage and retrieval when deploying machine learning models across various HISs, addressing the challenges highlighted by platforms such as EPOCH®, ePRISM®, KETOS, and others. Methods: The MoCab architecture is designed to streamline predictive modeling in healthcare through a structured framework incorporating several specialized parts. The Data Service Center manages patient data retrieval from FHIR servers. These data are then processed by the Knowledge Model Center, where they are formatted and fed into predictive models. The Model Retraining Center is crucial in continuously updating these models to maintain accuracy in dynamic clinical environments. The framework further incorporates Clinical Decision Support (CDS) Hooks for issuing clinical alerts. It uses Substitutable Medical Apps Reusable Technologies (SMART) on FHIR to develop applications for displaying alerts, prediction results, and patient records. Results: The MoCab framework was demonstrated using three types of predictive models: a scoring model (qCSI), a machine learning model (NSTI), and a deep learning model (SPC), applied to synthetic data that mimic a major EHR system. The implementations showed how MoCab integrates predictive models with health data for clinical decision support, utilizing CDS Hooks and SMART on FHIR for seamless HIS integration. The demonstration confirmed the practical utility of MoCab in supporting clinical decision making, validated by its application in various healthcare settings. Conclusions: We demonstrate MoCab's potential in

关键词： Interoperability

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A BCLC Staging System for Hepatocellular Carcinoma using Swin Transformer and CT Imaging

A BCLC Staging System for Hepatocellular Carcinoma using Swi...

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Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)

作者： Shun-Cheng Chang Pochuang Wang Weichung Wang Tung-Hung Su Jia-Horng Kao Che Lin Graduate Institute of Communication Engineering National Taiwan University (NTU) Taipei Taiwan Department of Computer Science and Information Engineering NTU Taipei Taiwan NTU Institute of Applied Mathematical Sciences Taipei Taiwan Department of Internal Medicine Division of Gastroenterology and Hepatology National Taiwan University Hospital Taipei Taiwan Department of Electrical Engineering NTU Taipei Taiwan NTU Center for Advanced Computing and Imaging in Biomedicine Taipei Taiwan NTU Smart Medicine and Health Informatics Program Taipei Taiwan

ISBN: (数字)9798350371499

ISBN: (纸本)9798350371505

The Barcelona Clinic Liver Cancer (BCLC) staging system plays a crucial role in clinical planning, offering valuable insights for effectively managing hepatocellular carcinoma. Accurate prediction of BCLC stages can significantly ease the workload on radiologists. However, few datasets are explicitly designed for discerning BCLC stages. Despite the common practice of appending BCLC labels to clinical data within datasets, the inherent imbalance in BCLC distribution is further amplified by the diverse purposes for which datasets are curated. In this study, we aim to develop a BCLC staging system using the advanced Swin Transformer model. Additionally, we explore the integration of two datasets, each originally intended for separate objectives, highlighting the critical challenge of preserving class distribution in practical study designs. This exploration is pivotal for ensuring the applicability of our developed staging system in the designed clinical settings. Our resulting BCLC staging system demonstrates an accuracy of 55.81% (±7.8%), contributing to advancing medical image-based research for predicting BCLC stages.

关键词： Liver cancer Accuracy Computed tomography Biological system modeling Transformers Planning Biomedical imaging

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FAME: a lightweight spatio-temporal network for model attribution of face-swap deepfakes

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Expert Systems with Applications 2025年 292卷

作者： Wasim Ahmad Yan-Tsung Peng Yuan-Hao Chang Institute of Information Science Academia Sinica Taipei 115 Taiwan Social Networks and Human-Centred Computing Taiwan International Graduate Program Taipei 115 Taiwan Department of Computer Science National Chengchi University Taipei 116 Taiwan Department of Computer Science and Information Engineering National Taiwan University Taipei 106 Taiwan

The widespread emergence of face-swap Deepfake videos poses growing risks to digital security, privacy, and media integrity, necessitating effective forensic tools for identifying the source of such manipulations. Although most prior research has focused primarily on binary Deepfake detection, the task of model attribution determining which generative model produced a given Deepfake remains underexplored. In this paper, we introduce FAME (Fake Attribution via Multilevel Embeddings), a lightweight and efficient spatio-temporal framework designed to capture subtle generative artifacts specific to different face-swap models. FAME integrates spatial and temporal attention mechanisms to improve attribution accuracy while remaining computationally efficient. We evaluate our model on three challenging and diverse datasets, which include Deepfake Detection and Manipulation (DFDM), FaceForensics++ (FF++), and FakeAVCeleb (FAVCeleb). The evaluation results show that FAME consistently performs better than existing methods in both accuracy and runtime, highlighting its potential for deployment in real-world forensic and information security applications. The code and pretrained models will be made publicly available at: https://***/wasim004/FAME/ .

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Discover and align taxonomic context priors for open-world semi-supervised learning 23

Discover and align taxonomic context priors for open-world s...

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Proceedings of the 37th International Conference on Neural information Processing Systems

作者： Yu Wang Zhun Zhong Pengchong Qiao Xuxin Cheng Xiawu Zheng Chang Liu Nicu Sebe Rongrong Ji Jie Chen School of Electronic and Computer Engineering Peking University Shenzhen China and AI for Science (AI4S)-Preferred Program Peking University Shenzhen Graduate School China School of Computer Sceince University of Nottingham United Kingdom School of Electronic and Computer Engineering Peking University Shenzhen China and Department of Information Engineering and Computer Science University of Trento Italy School of Electronic and Computer Engineering Peking University Shenzhen China Peng Cheng Laboratory Shenzhen China and Key Laboratory of Multimedia Trusted Perception and Efficient Computing Ministry of Education of China Xiamen University Department of Automation Tsinghua University Beijing China Department of Information Engineering and Computer Science University of Trento Italy School of Electronic and Computer Engineering Peking University Shenzhen China and Peng Cheng Laboratory Shenzhen China and AI for Science (AI4S)-Preferred Program Peking University Shenzhen Graduate School China

Open-world Semi-Supervised Learning (OSSL) is a realistic and challenging task, aiming to classify unlabeled samples from both seen and novel classes using partially labeled samples from the seen classes. Previous works typically explore the relationship of samples as priors on the pre-defined single-granularity labels to help novel class recognition. In fact, classes follow a taxonomy and samples can be classified at multiple levels of granularity, which contains more underlying relationships for supervision. We thus argue that learning with single-granularity labels results in sub-optimal representation learning and inaccurate pseudo labels, especially with unknown classes. In this paper, we take the initiative to explore and propose a uniformed framework, called Taxonomic context prIors Discovering and Aligning (TIDA), which exploits the relationship of samples under various granularity. It allows us to discover multi-granularity semantic concepts as taxonomic context priors (i.e., sub-class, target-class, and super-class), and then collaboratively leverage them to enhance representation learning and improve the quality of pseudo labels. Specifically, TIDA comprises two components: i) A taxonomic context discovery module that constructs a set of hierarchical prototypes in the latent space to discover the underlying taxonomic context priors; ii) A taxonomic context-based prediction alignment module that enforces consistency across hierarchical predictions to build the reliable relationship between classes among various granularity and provide additions supervision. We demonstrate that these two components are mutually beneficial for an effective OSSL framework, which is theoretically explained from the perspective of the EM algorithm. Extensive experiments on seven commonly used datasets show that TIDA can significantly improve the performance and achieve a new state of the art. The source codes are publicly available at https://***/rain305f/TIDA.

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Local Periodicity-Based Beat Tracking for Expressive Classical Piano Music

arXiv

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arXiv 2023年

作者： Chiu, Ching-Yu Müller, Meinard Davies, Matthew E.P. Su, Alvin Wen-Yu Yang, Yi-Hsuan The Graduate Program of Multimedia Systems and Intelligent Computing National Cheng Kung University Academia Sinica Taiwan The International Audio Laboratories Erlangen Germany The Department of Informatics Engineering Centre for Informatics and Systems of the University of Coimbra University of Coimbra Portugal The Department of Computer Science and Information Engineering National Cheng Kung University Taiwan Yating Music Team Taiwan AI Labs Taiwan Research Center for IT Innovation Academia Sinica Taiwan

To model the periodicity of beats, state-of-the-art beat tracking systems use "post-processing trackers" (PPTs) that rely on several empirically determined global assumptions for tempo transition, which work well for music with a steady tempo. For expressive classical music, however, these assumptions can be too rigid. With two large datasets of Western classical piano music, namely the Aligned Scores and Performances (ASAP) dataset and a dataset of Chopin's Mazurkas (Maz-5), we report on experiments showing the failure of existing PPTs to cope with local tempo changes, thus calling for new methods. In this paper, we propose a new local periodicity-based PPT, called predominant local pulse-based dynamic programming (PLPDP) tracking, that allows for more flexible tempo transitions. Specifically, the new PPT incorporates a method called "predominant local pulses" (PLP) in combination with a dynamic programming (DP) component to jointly consider the locally detected periodicity and beat activation strength at each time instant. Accordingly, PLPDP accounts for the local periodicity, rather than relying on a global tempo assumption. Compared to existing PPTs, PLPDP particularly enhances the recall values at the cost of a lower precision, resulting in an overall improvement of F1-score for beat tracking in ASAP (from 0.473 to 0.493) and Maz-5 (from 0.595 to 0.838). © 2023, CC BY.

关键词： Dynamic programming

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Improved LSTM hyperparameters alongside sentiment walk-forward validation for time series prediction

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Journal of Open Innovation: Technology, Market, and Complexity 2025年第1期11卷

作者： Wahyuddin, Eko Putra Caraka, Rezzy Eko Kurniawan, Robert Caesarendra, Wahyu Gio, Prana Ugiana Pardamean, Bens Department of Statistical Computing Politeknik Statistika STIS Jakarta 13330 Indonesia Statistics Indonesia (BPS) Jl. Dr Sutomo 6-8 Jakarta Indonesia School of Economics and Business Telkom University Bandung 40257 Indonesia Research Center for Data and Information Sciences Research Organization for Electronics and Informatics National Research and Innovation Agency (BRIN) Bandung 40135 Indonesia Faculty of Integrated Technologies Universiti Brunei Darussalam Gadong BE1410 Brunei Darussalam Department of Mathematics Universitas Sumatera Utara Medan 20155 Indonesia Bioinformatics and Data Science Research Centre Bina Nusantara University DKI Jakarta 11480 Indonesia Computer Science Department BINUS Graduate Program Master of Computer Science Program Bina Nusantara University DKI Jakarta 11480 Indonesia

This study aims to address the common issue of biased estimation errors in time series modeling by analyzing the error in locating ideal hyperparameters and defining appropriate validation methods. Specifically, it focuses on predicting the stock price of Bank Rakyat Indonesia using a combination of historical stock prices, technical indicators, exchange rates, and news sentiment data, while determining the optimal variables for deep learning models. Employing a deep learning-based Long-Short Term Memory (LSTM) model, the study optimizes hyperparameters alongside walk-forward validation for time series prediction. It explores different combinations of variables and adapts the sliding window approach to the context of the data. The results highlight the importance of optimizing hyperparameters and utilizing walk-forward validation for accurate time series prediction. The model incorporating historical stock prices and sentiment scores outperforms others, achieving an RMSE of 96.61 and MAE of 86.97. Incorporating sentiment scores reduces RMSE by 39.55 % compared to models using only historical stock prices, while adding technical indicators does not yield improvement. This study contributes to the field by addressing the issue of biased estimation errors in time series modeling, offering insights into the optimization of hyperparameters and validation methods for accurate predictions. It also underscores the significance of incorporating sentiment analysis alongside historical stock prices for improved forecasting accuracy. © 2024 The Authors

关键词： LSTM Sentiment analysis Stock price prediction Time series modeling Validation methods

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programming Variational Quantum Circuits with Quantum-Train Agent

Programming Variational Quantum Circuits with Quantum-Train ...

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Quantum Communications, Networking, and computing (QCNC), International Conference on

作者： Chen-Yu Liu Samuel Yen-Chi Chen Kuan-Cheng Chen Wei-Jia Huang Yen-Jui Chang Graduate Institute of Applied Physics National Taiwan University Taipei Taiwan Hon Hai (Foxconn) Research Institute Taipei Taiwan Wells Fargo New York NY USA Department of Electrical and Electronic Engineering Imperial College London London UK Centre for Quantum Engineering Science and Technology (QuEST) Imperial College London London UK Quantum Information Center Chung Yuan Christian University Taoyuan City Taiwan Master Program in Intelligent Computing and Big Data Chung Yuan Christian University Taoyuan City Taiwan

ISBN: (数字)9798331531591

ISBN: (纸本)9798331531607

This study introduces the Quantum-Train Quantum Fast Weight programmer (QT-QFWP) framework, enabling efficient and scalable programming of variational quantum circuits (VQCs) through quantum-driven parameter updates for the classical slow programmer controlling the fast programmer VQC. By optimizing quantum and classical parameter management, QT-QFWP significantly reduces parameters (by 70–90%) compared to Quantum Long Short-Term Memory (QLSTM) and Quantum Fast Weight programmer (QFWP) while maintaining accuracy. Benchmarking on time-series tasks—including Damped Simple Harmonic Motion (SHM), NARMA5, and Simulated Gravitational Waves (GW)—demonstrates superior efficiency and predictive accuracy. QT-QFWP is particularly advantageous for near-term quantum systems, addressing qubit and gate fidelity constraints, enhancing VQC deployment in time-sensitive applications, and expanding quantum computing’s role in machine learning.

关键词： Quantum system Accuracy Computational modeling Qubit Neural networks programming Predictive models Quantum circuit Physics Long short term memory

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Sodium-ion battery cycle life prediction using machine learning

Sodium-ion battery cycle life prediction using machine learn...

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International Conference on Green Energy, computing and Intelligent Technology 2024 (GEn-CITy 2024)

作者： Linfeng Liu Filbert H. Juwono W. K. Wong Erick Purwanto Tingyan Jin Yuyang Zhen Sustainable Energy Technology Program Xi'an Jiaotong-Liverpool University Suzhou People's Republic of China Department of Electrical and Electronic Engineering Xi'an Jiaotong-Liverpool University Suzhou People's Republic of China Department of Electrical and Computer Engineering Curtin University Malaysia Miri Malaysia Department of Computing Xi'an Jiaotong-Liverpool University Suzhou People's Republic of China School of Mechanical and Electrical Engineering Beijing Information Science and Technology University Beijing People's Republic of China School of Instrument Science and Technology Beijing University of Technology Beijing People's Republic of China

ISBN: (数字)9781837242863

In this study, we explore the classification and prediction capabilities of three models—Genetic programming (GP), Logistic Regression (LR), and the Kolmogorov-Arnold Network (KAN)—on the task of sodium-ion battery life prediction. By leveraging a dataset composed of multiple battery characteristics, we aim to determine the remaining power of sodium-ion batteries using these machine learning models. The KAN model, being a novel approach, demonstrates superior performance across various metrics, including accuracy, precision, recall, and F1 score, when compared to the other two models. This highlights the potential of KAN as a robust model for complex classification tasks in the field of battery life prediction.

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Theoretical foundations of studying criticality in the brain

arXiv

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arXiv 2023年

作者： Tian, Yang Tan, Zeren Hou, Hedong Li, Guoqi Cheng, Aohua Qiu, Yike Weng, Kangyu Chen, Chun Sun, Pei Department of Psychology Tsinghua Laboratory of Brain and Intelligence Tsinghua University Beijing100084 China Laboratory of Advanced Computing and Storage Central Research Institute 2012 Laboratories Huawei Technologies Co. Ltd. Beijing100084 China Institute for Interdisciplinary Information Science Tsinghua University Beijing100084 China UFR de Mathématiques Université de Paris Paris75013 France Institute of Automation Chinese Academy of Science Beijing100190 China University of Chinese Academy of Science Beijing100049 China Tsien Excellence in Engineering Program School of Aerospace Engineering Tsinghua University Beijing100084 China

Criticality is hypothesized as a physical mechanism underlying efficient transitions between cortical states and remarkable information processing capacities in the brain. While considerable evidence generally supports this hypothesis, non-negligible controversies persist regarding the ubiquity of criticality in neural dynamics and its role in information processing. Validity issues frequently arise during identifying potential brain criticality from empirical data. Moreover, the functional benefits implied by brain criticality are frequently misconceived or unduly generalized. These problems stem from the non-triviality and immaturity of the physical theories that analytically derive brain criticality and the statistic techniques that estimate brain criticality from empirical data. To help solve these problems, we present a systematic review and reformulate the foundations of studying brain criticality, i.e., ordinary criticality (OC), quasi-criticality (qC), self-organized criticality (SOC), and self-organized quasi-criticality (SOqC), using the terminology of neuroscience. We offer accessible explanations of the physical theories and statistic techniques of brain criticality, providing step-by-step derivations to characterize neural dynamics as a physical system with avalanches. We summarize error-prone details and existing limitations in brain criticality analysis and suggest possible solutions. Moreover, we present a forward-looking perspective on how optimizing the foundations of studying brain criticality can deepen our understanding of various neuroscience questions. © 2023, CC BY.

关键词： Brain

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