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IEEE International Conference on High Performance computing and Communications

作者： Mostafa Mehrabi Xing Fan Nasser Giacaman Oliver Sinnen Department of Electrical and Computer Engineering The University of Auckland Parallel and Reconfigurable Computing Lab

ISBN: (纸本)9781509042982

A reduction is a parallel programming mechanism for combining two or more elements into one. Many parallel programming languages, tools and frameworks (e.g., OpenMP, MPI, etc.) directly support simple forms of reductions (e.g., building a total sum out of partial sums). Some of those tools and frameworks allow more complex reductions to be implemented as custom reductions. However, the success of network-based application frameworks like Hadoop have shown that there is a strong need for reductions of aggregate data structures, such as the union of sets or maps. Usually parallel programming frameworks on shared-memory systems do not support these types of complex reductions directly, and a user needs to implement them manually. To address the gap thereof, this paper proposes an object-oriented reduction framework that supports reductions of aggregate types, and proposes the nesting of reduction objects for flexible extensions of reduction operations. Based on the proposed framework, a reduction library (RedLib) has been developed for Java with direct support for many common reduction operations on collections and maps. Furthermore, the paper studies the usage of the framework for common and complex cases and evaluates its performance, based on operations found in standard benchmarks.

关键词： object oriented reductions shared memory reductions nestable reductions aggregate reductions collections maps :

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Corrigendum to “Biological Evaluation of the Effect of Galvanic Coupling Intrabody Communication on Human Skin Fibroblast Cells”

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Wireless Communications and Mobile computing 2018年第1期2018卷

作者： Shi Lin Yue-Ming Gao Juan Cai Željka Lučev Vasić Mang-I Vai Min Du Mario Cifrek Sio-Hang Pun College of Physics and Information Engineering Fuzhou University Fuzhou *** Key Lab of Medical Instrumentation & Pharmaceutical Technology of Fujian Province Fuzhou China Faculty of Electrical Engineering and Computing University of Zagreb Zagreb Croatiaunizg.hr State Key Laboratory of Analog and Mixed-Signal VLSI University of Macau Macau Chinaumac.mo Department of Electrical and Computer Engineering Faculty of Science and Technology University of Macau Macau Chinaumac.mo Key Lab of Eco-Industrial Green Technology of Fujian Province Nanping China

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Learned Binary Spectral Shape Descriptor for 3D Shape Correspondence

Learned Binary Spectral Shape Descriptor for 3D Shape Corres...

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IEEE Conference on computer Vision and Pattern Recognition

作者： Jin Xie Meng Wang Yi Fang NYU Multimedia and Visual Computing Lab UAE Department of Electrical and Computer Engineering New York University Abu Dhabi Department of Electrical and Computer Engineering NYU Tandon School of Engineering

ISBN: (纸本)9781467388528

Dense 3D shape correspondence is an important problem in computer vision and computer graphics. Recently, the local shape descriptor based 3D shape correspondence approaches have been widely studied, where the local shape descriptor is a real-valued vector to characterize the geometrical structure of the shape. Different from these real-valued local shape descriptors, in this paper, we propose to learn a novel binary spectral shape descriptor with the deep neural network for 3D shape correspondence. The binary spectral shape descriptor can require less storage space and enable fast matching. First, based on the eigenvectors of the Laplace-Beltrami operator, we construct a neural network to form a nonlinear spectral representation to characterize the shape. Then, for the defined positive and negative points on the shapes, we train the constructed neural network by minimizing the errors between the outputs and their corresponding binary descriptors, minimizing the variations of the outputs of the positive points and maximizing the variations of the outputs of the negative points, simultaneously. Finally, we binarize the output of the neural network to form the binary spectral shape descriptor for shape correspondence. The proposed binary spectral shape descriptor is evaluated on the SCAPE and TOSCA 3D shape datasets for shape correspondence. The experimental results demonstrate the effectiveness of the proposed binary shape descriptor for the shape correspondence task.

关键词： Descriptors 3D shape Spectral shape images computer vision Neural network Correspondence Binary Output Structural shapes tige

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Gabor Convolutional Networks

arXiv

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arXiv 2017年

作者： Luan, Shangzhen Chen, Chen Zhang, Baochang Han, Jungong Liu, Jianzhuang School of Automation Science and Electrical Engineering Beihang University Beijing100191 China Department of Electrical and Computer Engineering The University of North Carolina at Charlotte CharlotteNC28223 United States Shenzhen Academy of Aerospace Technology Shenzhen518057 China School of Computing and Communications Lancaster University LancasterLA1 4YW United Kingdom Noah’s Ark Lab Huawei Technologies Co. Ltd. Shenzhen518129 China

In steerable filters, a filter of arbitrary orientation can be generated by a linear combination of a set of "basis filters." Steerable properties dominate the design of the traditional filters, e.g., Gabor filters and endow features the capability of handling spatial transformations. However, such properties have not yet been well explored in the deep convolutional neural networks (DCNNs). In this paper, we develop a new deep model, namely, Gabor convolutional networks (GCNs or Gabor CNNs), with Gabor filters incorporated into DCNNs such that the robustness of learned features against the orientation and scale changes can be reinforced. By manipulating the basic element of DCNNs, i.e., the convolution operator, based on Gabor filters, GCNs can be easily implemented and are readily compatible with any popular deep learning architecture. We carry out extensive experiments to demonstrate the promising performance of our GCNs framework, and the results show its superiority in recognizing objects, especially when the scale and rotation changes take place frequently. Moreover, the proposed GCNs have much fewer network parameters to be learned and can effectively reduce the training complexity of the network, leading to a more compact deep learning model while still maintaining a high feature representation capacity. The source code can be found at https://***/bczhangbczhang. Copyright © 2017, The Authors. All rights reserved.

关键词： Gabor filters

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Author Correction: Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers

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Scientific data 2021年第1期8卷 242页

作者： Julien Cohen-Adad Eva Alonso-Ortiz Mihael Abramovic Carina Arneitz Nicole Atcheson Laura Barlow Robert L Barry Markus Barth Marco Battiston Christian Büchel Matthew Budde Virginie Callot Anna J E Combes Benjamin De Leener Maxime Descoteaux Paulo Loureiro de Sousa Marek Dostál Julien Doyon Adam Dvorak Falk Eippert Karla R Epperson Kevin S Epperson Patrick Freund Jürgen Finsterbusch Alexandru Foias Michela Fratini Issei Fukunaga Claudia A M Gandini Wheeler-Kingshott Giancarlo Germani Guillaume Gilbert Federico Giove Charley Gros Francesco Grussu Akifumi Hagiwara Pierre-Gilles Henry Tomáš Horák Masaaki Hori James Joers Kouhei Kamiya Haleh Karbasforoushan Miloš Keřkovský Ali Khatibi Joo-Won Kim Nawal Kinany Hagen H Kitzler Shannon Kolind Yazhuo Kong Petr Kudlička Paul Kuntke Nyoman D Kurniawan Slawomir Kusmia René labounek Maria Marcella Laganà Cornelia Laule Christine S Law Christophe Lenglet Tobias Leutritz Yaou Liu Sara Llufriu Sean Mackey Eloy Martinez-Heras Loan Mattera Igor Nestrasil Kristin P O'Grady Nico Papinutto Daniel Papp Deborah Pareto Todd B Parrish Anna Pichiecchio Ferran Prados Àlex Rovira Marc J Ruitenberg Rebecca S Samson Giovanni Savini Maryam Seif Alan C Seifert Alex K Smith Seth A Smith Zachary A Smith Elisabeth Solana Y Suzuki George Tackley Alexandra Tinnermann Jan Valošek Dimitri Van De Ville Marios C Yiannakas Kenneth A Weber Ii Nikolaus Weiskopf Richard G Wise Patrik O Wyss Junqian Xu NeuroPoly Lab Institute of Biomedical Engineering Polytechnique Montreal Montreal QC Canada. jcohen@polymtl.ca. Functional Neuroimaging Unit CRIUGM Université de Montréal Montreal QC Canada. jcohen@polymtl.ca. Mila - Quebec AI Institute Montreal QC Canada. jcohen@polymtl.ca. NeuroPoly Lab Institute of Biomedical Engineering Polytechnique Montreal Montreal QC Canada. Department of Radiology Swiss Paraplegic Centre Nottwil Switzerland. Centre for Advanced Imaging The University of Queensland Brisbane Australia. Department of Radiology University of British Columbia Vancouver BC Canada. Athinoula A. Martinos Center for Biomedical Imaging Department of Radiology Massachusetts General Hospital Charlestown MA USA. Department of Radiology Harvard Medical School Boston MA USA. Harvard-Massachusetts Institute of Technology Health Sciences & Technology Cambridge MA USA. School of Information Technology and Electrical Engineering The University of Queensland Brisbane Australia. NMR Research Unit Queen Square MS Centre UCL Queen Square Institute of Neurology Faculty of Brain Sciences University College London London UK. Department of Systems Neuroscience University Medical Center Hamburg-Eppendorf Hamburg Germany. Department of Neurosurgery Medical College of Wisconsin Milwaukee WI USA. Aix-Marseille Univ CNRS CRMBM Marseille France. APHM Hopital Universitaire Timone CEMEREM Marseille France. Vanderbilt University Institute of Imaging Science Vanderbilt University Medical Center Nashville TN USA. Department of Computer and Software Engineering Polytechnique Montreal Montreal Canada. CHU Sainte-Justine Research Centre Montreal QC Canada. Centre de Recherche CHUS CIMS Sherbrooke Canada. Sherbrooke Connectivity Imaging Lab (SCIL) Computer Science department Université de Sherbrooke Sherbrooke Canada. Université de Strasbourg CNRS ICube Strasbourg France. UHB - University Hospital Brno and Masaryk University Department of Radiology and Nuclear

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Thread-aware adaptive prefetcher on multicore systems: Improving the performance for multithreaded workloads

Thread-aware adaptive prefetcher on multicore systems: Impro...

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作者： Liu, Peng Yu, Jiyang Huang, Michael C. College of Information Science and Electronic Engineering Zhejiang University Hangzhou310027 China State Key Laboratory of Mathematical Engineering and Advanced Computing Wuxi214125 China Department of Shannon Lab. Huawei Technologies Co. Ltd. Hangzhou310051 China Department of Electrical and Computer Engineering University of Rochester RochesterNY14627-0231 United States

Most processors employ hardware data prefetching techniques to hide memory access latencies. However, the prefetching requests from different threads on a multicore processor can cause severe interference with prefetching and/or demand requests of others. The data prefetching can lead to significant performance degradation due to shared resource contention on shared memory multicore systems. This article proposes a thread-aware data prefetching mechanism based on low-overhead runtime information to tune prefetching modes and aggressiveness, mitigating the resource contention in the memory system. Our solution has three new components: (1) a self-tuning prefetcher that uses runtime feedback to dynamically adjust data prefetching modes and arguments of each thread, (2) a filtering mechanism that informs the hardware about which prefetching request can cause shared data invalidation and should be discarded, and (3) a limiter thread acceleration mechanism to estimate and accelerate the critical thread which has the longest completion time in the parallel region of execution. On a set of multithreaded parallel benchmarks, our thread-aware data prefetchingmechanism improves the overall performance of 64-core system by 13% over a multimode prefetch baseline system with two-level cache organization and conventional modified, exclusive, shared, and invalid-based directory coherence *** compare our approach with the feedback directed prefetching technique and find that it provides 9% performance improvement on multicore systems, while saving the memory bandwidth consumption.

关键词： Benchmarking

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Performance Analysis of GPU-Based Convolutional Neural Networks

Performance Analysis of GPU-Based Convolutional Neural Netwo...

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International Conference on Parallel Processing (ICPP)

作者： Xiaqing Li Guangyan Zhang H. Howie Huang Zhufan Wang Weimin Zheng Tsinghua National Laboratory for Information Science and Technology State Key Lab of Mathematical Engineering and Advanced Computing Wuxi China Department of Computer Science and Technology Tsinghua University Department of Electrical and Computer Engineering George Washington University

ISBN: (纸本)9781509028245

As one of the most important deep learning models, convolutional neural networks (CNNs) have achieved great successes in a number of applications such as image classification, speech recognition and nature language understanding. Training CNNs on large data sets is computationally expensive, leading to a flurry of research and development of open-source parallel implementations on GPUs. However, few studies have been performed to evaluate the performance characteristics of those implementations. In this paper, we conduct a comprehensive comparison of these implementations over a wide range of parameter configurations, investigate potential performance bottlenecks and point out a number of opportunities for further optimization.

关键词： Convolution Graphics processing units Runtime Training Computational modeling computer architecture Kernel

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Identifying the best machine learning algorithms for brain tumor segmentation, progression assessment, and overall survival prediction in the BRATS challenge

arXiv

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arXiv 2018年

作者： Bakas, Spyridon Reyes, Mauricio Jakab, Andras Bauer, Stefan Rempfler, Markus Crimi, Alessandro Shinohara, Russell Takeshi Berger, Christoph Ha, Sung Min Rozycki, Martin Prastawa, Marcel Alberts, Esther Lipkova, Jana Freymann, John Kirby, Justin Bilello, Michel Fathallah-Shaykh, Hassan M. Wiest, Roland Kirschke, Jan Wiestler, Benedikt Colen, Rivka Kotrotsou, Aikaterini Lamontagne, Pamela Marcus, Daniel Milchenko, Mikhail Nazeri, Arash Weber, Marc-Andr Mahajan, Abhishek Baid, Ujjwal Gerstner, Elizabeth Kwon, Dongjin Acharya, Gagan Agarwal, Manu Alam, Mahbubul Albiol, Alberto Albiol, Antonio Albiol, Francisco J. Alex, Varghese Allinson, Nigel Amorim, Pedro H.A. Amrutkar, Abhijit Anand, Ganesh Andermatt, Simon Arbel, Tal Arbelaez, Pablo Avery, Aaron Azmat, Muneeza Pranjal, B. Bai, Wenjia Banerjee, Subhashis Barth, Bill Batchelder, Thomas Batmanghelich, Kayhan Battistella, Enzo Beers, Andrew Belyaev, Mikhail Bendszus, Martin Benson, Eze Bernal, Jose Bharath, Halandur Nagaraja Biros, George Bisdas, Sotirios Brown, James Cabezas, Mariano Cao, Shilei Cardoso, Jorge M. Carver, Eric N. Casamitjana, Adri Castillo, Laura Silvana Cat, Marcel Cattin, Philippe Cérigues, Albert Chagas, Vinicius S. Chandra, Siddhartha Chang, Yi-Ju Chang, Shiyu Chang, Ken Chazalon, Joseph Chen, Shengcong Chen, Wei Chen, Jefferson W. Chen, Zhaolin Cheng, Kun Choudhury, Ahana Roy Chylla, Roger Clrigues, Albert Colleman, Steven Colmeiro, Ramiro German Rodriguez Combalia, Marc Costa, Anthony Cui, Xiaomeng Dai, Zhenzhen Dai, Lutao Daza, Laura Alexandra Deutsch, Eric Ding, Changxing Dong, Chao Dong, Shidu Dudzik, Wojciech Eaton-Rosen, Zach Egan, Gary Escudero, Guilherme Estienne, Tho Everson, Richard Fabrizio, Jonathan Fan, Yong Fang, Longwei Feng, Xue Ferrante, Enzo Fidon, Lucas Fischer, Martin French, Andrew P. Fridman, Naomi Fu, Huan Fuentes, David Gao, Yaozong Gates, Evan Gering, David Gholami, Amir Gierke, Willi Glocker, Ben Gong, Mingming Gonzlez-Vill, Sandra Grosges, T. Guan, Yuanfang Guo, Sheng Gupta, Sudeep Han, Woo-Sup Han, Il Song Harmuth, Ko Center for Biomedical Image Computing and Analytics University of Pennsylvania PhiladelphiaPA United States Department of Radiology Perelman School of Medicine University of Pennsylvania PhiladelphiaPA United States Department of Pathology and Laboratory Medicine Perelman School of Medicine University of Pennsylvania PhiladelphiaPA United States Institute for Surgical Technology and Biomechanics University of Bern Bern Switzerland Center for MR-Research University Children's Hospital Zurich Zurich Switzerland Support Centre for Advanced Neuroimaging Inselspital Institute for Diagnostic and Interventional Neuroradiology Bern University Hospital Bern Switzerland University Hospital of Zurich Zurich Switzerland Center for Clinical Epidemiology and Biostatistics University of Pennsylvania Philadelphia United States Image-Based Biomedical Modeling Group Technical University of Munich Munich Germany Icahn School of Medicine Mount Sinai Health System New YorkNY United States Leidos Biomedical Research Inc. Frederick National Laboratory for Cancer Research FrederickMD21701 United States Cancer Imaging Program National Cancer Institute National Institutes of Health BethesdaMD20814 United States Department of Neurology University of Alabama at Birmingham BirminghamAL United States Department of Diagnostic Radiology University of Texas MD Anderson Cancer Center HoustonTX United States Department of Psychology Washington University St. LouisMO United States Neuroimaging Informatics and Analysis Center Washington University St. LouisMO United States Department of Radiology Washington University St. LouisMO United States Institute of Diagnostic and Interventional Radiology Pediatric Radiology and Neuroradiology University Medical Center Rostock Ernst-Heydemann-Str. 6 Rostock18057 Germany Tata Memorial Centre Homi Bhabha National Institute Mumbai India Shri Guru Gobind Singhji Institute of Engineering and Technology Nanded India NVIDIA Santa Clara

Gliomas are the most common primary brain malignancies, with different degrees of aggressiveness, variable prognosis and various heterogeneous histologic sub-regions, i.e., peritumoral edematous/invaded tissue, necrotic core, active and non-enhancing core. This intrinsic heterogeneity is also portrayed in their radio-phenotype, as their sub-regions are depicted by varying intensity profiles disseminated across multi-parametric magnetic resonance imaging (mpMRI) scans, reflecting varying biological properties. Their heterogeneous shape, extent, and location are some of the factors that make these tumors difficult to resect, and in some cases inoperable. The amount of resected tumor is a factor also considered in longitudinal scans, when evaluating the apparent tumor for potential diagnosis of progression. Furthermore, there is mounting evidence that accurate segmentation of the various tumor sub-regions can offer the basis for quantitative image analysis towards prediction of patient overall survival. This study assesses the state-of-the-art machine learning (ML) methods used for brain tumor image analysis in mpMRI scans, during the last seven instances of the International Brain Tumor Segmentation (BraTS) challenge, i.e., 2012-2018. Specifically, we focus on i) evaluating segmentations of the various glioma sub-regions in pre-operative mpMRI scans, ii) assessing potential tumor progression by virtue of longitudinal growth of tumor sub-regions, beyond use of the RECIST/RANO criteria, and iii) predicting the overall survival from pre-operative mpMRI scans of patients that underwent gross total resection. Finally, we investigate the challenge of identifying the best ML algorithms for each of these tasks, considering that apart from being diverse on each instance of the challenge, the multi-institutional mpMRI BraTS dataset has also been a continuously evolving/growing dataset. Copyright © 2018, The Authors. All rights reserved.

关键词： Tumors

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Development of a Carbon Fiber Knitted Capacitive Touch Sensor

Development of a Carbon Fiber Knitted Capacitive Touch Senso...

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作者： Vallett, Richard Young, Ryan Knittel, Chelsea Kim, Youngmoo Dion, Genevieve Shima Seiki Haute Tech Lab at ExCITe Drexel University PhiladelphiaPA United States ExCITe Center Drexel University PhiladelphiaPA United States Mechanical Engineering and Mechanics College of Engineering Drexel University PhiladelphiaPA United States Department of Computer Science College of Computing and Informatics Drexel University PhiladelphiaPA United States Materials Science and Engineering College of Engineering Drexel University PhiladelphiaPA United States Electrical and Computer Engineering College of Engineering Drexel University PhiladelphiaPA United States Department of Design Westphal College of Media Arts and Design Drexel University PhiladelphiaPA United States

Textiles, in combination with advances in materials and design, offer exciting new possibilities for human and environmental interaction, including biometric and touch-based sensing. Previous fabric-based or flexible touch sensors have generally required a large number of sensing electrodes positioned in a dense XY grid configuration and a multitude of wires. This paper investigates the design and manufacturing of a planar (two-dimensional, XY location) touch fabric sensor with only two electrodes (wires) to sense both planar touch and pressure, making it ideal for applications with limited space/complexity for wiring. The proposed knitted structure incorporates a supplementary method of sensing to detect human touch on the fabric surface, which offers advantages over previous methods of touch localization through an efficient use of wire connections and sensing materials. This structure is easily manufactured as a single component utilizing flatbed knitting techniques and electrically conductive yarns. The design requires no embedded electronics or solid components in the fabric, which allows the sensor to be flexible and resilient. This paper discusses the design, fabrication, sensing methods, and applications of the fabric sensor in robotics and human-machine interaction, smart garments, and wearables, as well as the highly transdisciplinary approach pursued in developing medical textiles and flexible embedded sensors. Copyright © Materials Research Society 2016.

关键词： Wire

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Boundary aware navigation and mapping for a mobile automaton

Boundary aware navigation and mapping for a mobile automaton

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International Conference on Information and Automation (ICIA)

作者： Chaomin Luo Gene Eu Jan Jing Zhang Furao Shen Department of Electrical and Computer Engineering University of Detroit Mercy Michigan USA Department of Computer Science and Information Engineering National Taipei University Taiwan Beijing University of Chemical Technology China Robotic Intelligence & Neural Computing Lab Nanjing University Nanjing China

ISBN: (纸本)9781509041039

When autonomous mobile robots explore unknown terrain, map building is required for the vehicles to effectively and efficiently search the workspace with obstacle avoidance. In this paper, a boundary aware methodology is proposed for real-time autonomous robot navigation and mapping under unknown environments. An initial global trajectory is first created based on a re-planning technique before a LIDAR-based boundary aware local navigation approach is utilized to guide the robot locally with obstacle avoidance while building up its local map. Its effectiveness and efficiency of real-time simultaneous navigation and mapping for an autonomous robot were successfully validated by simulation and comparison studies.

关键词： Navigation Robot sensing systems Collision avoidance Mobile robots Heuristic algorithms Buildings

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