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International Image Processing, Applications and Systems Conference (IPAS)

作者： Soumick Chatterjee Pavan Tummala Oliver Speck Andreas Nürnberger Faculty of Computer Science Data and Knowledge Engineering Group Otto von Guericke University Magdeburg Magdeburg Germany Department of Biomedical Magnetic Resonance Faculty of Nature Science Otto von Guericke University Magdeburg Magdeburg Germany Faculty of Computer Science Otto von Guericke University Magdeburg Magdeburg Germany Department of Biomedical Magnetic Resonance Faculty of Nature Science Otto von Guericke University Magdeburg German Center for Neurodegenerative Disease Magdeburg Germany Center for Behavioral Brain Sciences Magdeburg Germany

ISBN: (纸本)9781665462204

Neural networks, especially convolutional neural networks (CNN), are one of the most common tools these days used in computer vision. Most of these networks work with real-valued data using real-valued features. Complex-valued convolutional neural networks (CV-CNN) can preserve the algebraic structure of complex-valued input data and have the potential to learn more complex relationships between the input and the ground-truth. Although some comparisons of CNNs and CV-CNNs for different tasks have been performed in the past, a large-scale investigation comparing different models operating on different tasks has not been conducted. Furthermore, because complex features contain both real and imaginary components, CV-CNNs have double the number of trainable parameters as real-valued CNNs in terms of the actual number of trainable parameters. Whether or not the improvements in performance with CV-CNN observed in the past have been because of the complex features or just because of having double the number of trainable parameters has not yet been explored. This paper presents a comparative study of CNN, CNNx2 (CNN with double the number of trainable parameters as the CNN), and CV-CNN. The experiments were performed using seven models for two different tasks - brain tumour classification and segmentation in brain MRIs. The results have revealed that the CV-CNN models outperformed the CNN and CNNx2 models.

关键词： Image segmentation computer vision Magnetic resonance imaging Complex networks Brain modeling Convolutional neural networks Task analysis

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Automatically Labeling Aging Scenarios with a Machine Learning Approach 1

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24th International Conference on Human-computer Interaction, HCII 2022

作者： An, Ning Xu, Yang Gao, Qinglin Zhu, Wenjie Wu, Aoran Chen, Honglin School of Computer Science and Information Engineering Hefei University of Technology Hefei China Key Laboratory of Knowledge Engineering with Big Data of Ministry of Education Hefei University of Technology Hefei China National Smart Eldercare International S&T Cooperation Base Hefei University of Technology Hefei China Intelligent Interconnected Systems Laboratory of Anhui Province Hefei University of Technology Hefei China Shanghai Tianyu Senior Living Service Co. Ltd. Shanghai China School of Basic Courses Bengbu Medical College Bengbu China Management and Business Department Skidmore College Saratoga SpringsNY United States Department of Social Sciences University of Eastern Finland Kuopio70150 Finland

ISBN: (数字)9783031179020

ISBN: (纸本)9783031179013

Older adults have diversified needs often associated with particular aging scenarios. People started to use aging scenarios to provide better Smart Eldercare services and develop innovative solutions. The problem is how to manage these scenarios effectively. To our best knowledge, this study is the first to develop a model to provide a structured framework of aging scenarios for research and teaching of eldercare services. Labeling aging scenarios can facilitate their collection, classification, and consolidation within this model. This study uses the automatic labeling approach to manage and utilize aging scenarios. Under each class, there are labels with different numbers and smaller granularity to reflect the requirements in each scenario case. Since a scenario case often involves more than one label, properly labeling it becomes a multi-label text classification problem. We extend the multi-label text classification model LSAN for labeling aging scenario cases. For evaluation purposes, we collected 938 scenario cases as the dataset. Experimental results show that our proposed method can achieve an average accuracy of 61.66%, better than other classical methods. © 2022, Springer Nature Switzerland AG.

关键词： Classification (of information)

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Complex-valued neural networks to speed-up MR Thermometry during Hyperthermia using Fourier PD and PDUNet

arXiv

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arXiv 2023年

作者： Khatun, Rupali Chatterjee, Soumick Bert, Christoph Wadepohl, Martin Ott, Oliver J. Semrau, Sabine Fietkau, Rainer Nürnberger, Andreas Gaipl, Udo S. Frey, Benjamin Department of Radiation Oncology Universitätsklinikum Erlangen Friedrich-Alexnder-Universität Erlangen-Nürnberg Erlangen Germany Department of Radiation Oncology Universitätsklinikum Erlangen Friedrich-Alexnder-Universität Erlangen-Nürnberg Erlangen Germany Comprehensive Cancer Centre Erlangen-EMN Erlangen Germany Data and Knowledge Engineering Group Faculty of Computer Science Otto von Guericke University Magdeburg Germany Genomics Research Centre Human Technopole Milan Italy Dr Sennewald Medizintechnik GmbH Munich Germany

Hyperthermia (HT) in combination with radio- and/or chemotherapy has become an accepted cancer treatment for distinct solid tumour entities. In HT, tumour tissue is exogenously heated to temperatures between 39 and 43 °C for 60 minutes. Temperature monitoring can be performed non-invasively using dynamic magnetic resonance imaging (MRI). However, the slow nature of MRI leads to motion artefacts in the images due to the movements of patients during image acquisition. By discarding parts of the data, the speed of the acquisition can be increased - known as undersampling. However, due to the invalidation of the Nyquist criterion, the acquired images might be blurry and can also produce aliasing artefacts. The aim of this work was, therefore, to reconstruct highly undersampled MR thermometry acquisitions with better resolution and with fewer artefacts compared to conventional methods. The use of deep learning in the medical field has emerged in recent times, and various studies have shown that deep learning has the potential to solve inverse problems such as MR image reconstruction. However, most of the published work only focuses on the magnitude images, while the phase images are ignored, which are fundamental requirements for MR thermometry. This work, for the first time, presents deep learning-based solutions for reconstructing undersampled MR thermometry data. Two different deep learning models have been employed here, the Fourier Primal-Dual network and the Fourier Primal-Dual UNet, to reconstruct highly undersampled complex images of MR thermometry. MR images of 44 patients with different sarcoma types who received HT treatment in combination with radiotherapy and/or chemotherapy were used in this study. The method reduced the temperature difference between the undersampled MRIs and the fully sampled MRIs from 1.3 °C to 0.6 °C in full volume and 0.49 °C to 0.06 °C in the tumour region for an acceleration factor of 10. Copyright © 2023, The Authors. All rights res

关键词： Chemotherapy

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HARDC : A novel ECG-based heartbeat classification method to detect arrhythmia using hierarchical attention based dual structured RNN with dilated CNN

arXiv

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arXiv 2023年

作者： Islam, Md Shofiqul Hasan, Khondokar Fida Sultana, Sunjida Uddin, Shahadat Lio', Pietro Quinn, Julian M.W. Moni, Mohammad Ali Faculty of Computing Universiti Malaysia Pahang Gambang Pahang Kuantan26300 Malaysia Lebuhraya Tun Razak Gambang Pahang Kuantan26300 Malaysia 2 George Street Brisbane4000 Australia Department of Computer Science and Engineering Islamic University Kushtia7600 Bangladesh School of Project Management Faculty of Engineering The University of Sydney Sydney Australia Department of Computer Science and Technology University of Cambridge Cambridge United Kingdom Bone Research Group The Garvan Institute of Medical Research DarlinghurstNSW Australia Artificial Intelligence & Data Science School of Health and Rehabilitation Sciences Faculty of Health and Behavioural Sciences The University of Queensland St LuciaQLD4072 Australia

Deep learning-based models have achieved significant success in detecting cardiac arrhythmia by analyzing ECG signals to categorize patient heartbeats. To improve the performance of such models, we have developed a novel hybrid hierarchical attention-based bidirectional recurrent neural network with dilated CNN (HARDC) method for arrhythmia classification. This solves problems that arise when traditional dilated convolutional neural network (CNN) models disregard the correlation between contexts and gradient dispersion. The proposed HARDC fully exploits the dilated CNN and bidirectional recurrent neural network unit (BiGRU-BiLSTM) architecture to generate fusion features. As a result of incorporating both local and global feature information and an attention mechanism, the model's performance for prediction is improved. By combining the fusion features with a dilated CNN and a hierarchical attention mechanism, the trained HARDC model showed significantly improved classification results and interpretability of feature extraction on the PhysioNet 2017 challenge dataset. Sequential Z-Score normalization, filtering, denoising, and segmentation are used to prepare the raw data for analysis. CGAN (Conditional Generative Adversarial Network) is then used to generate synthetic signals from the processed data. The experimental results demonstrate that the proposed HARDC model significantly outperforms other existing models, achieving an accuracy of 99.60%, F1 score of 98.21%, a precision of 97.66%, and recall of 99.60% using MIT-BIH generated ECG. In addition, this approach substantially reduces run time when using dilated CNN compared to normal convolution. Overall, this hybrid model demonstrates an innovative and cost-effective strategy for ECG signal compression and high-performance ECG recognition. Our results indicate that an automated and highly computed method to classify multiple types of arrhythmia signals holds considerable promise. © 2023, CC BY.

关键词： Electrocardiograms

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Weakly-supervised segmentation using inherently-explainable classification models and their application to brain tumour classification

arXiv

引用

arXiv 2022年

作者： Chatterjee, Soumick Yassin, Hadya Dubost, Florian Nürnberger, Andreas Speck, Oliver Data and Knowledge Engineering Group Faculty of Computer Science Otto von Guericke University Magdeburg Germany Biomedical Magnetic Resonance Faculty of Nature Sciences Otto von Guericke University Magdeburg Germany Genomics Research Centre Human Technopole Milan Italy Institute for Medical Engineering Faculty of Electrical Engineering and Information Technology Otto von Guericke University Magdeburg Germany Department of Biomedical Data Science Stanford University StanfordCA United States Centre for Behavioural Brain Sciences Magdeburg Germany German Centre for Neurodegenerative Disease Magdeburg Germany

Deep learning models have shown their potential in recent years for several applications. However, most of the models are opaque in nature and difficult to trust due to their complex reasoning - commonly known as the black-box problem. Some fields, such as medicine, require a high degree of transparency to accept and adopt such technologies. Consequently, there is a movement towards creating explainable/interpretable models or applying post-hoc explainability/interpretability methods on classifiers to build trust in deep learning models. Moreover, deep learning methods can be used for segmentation tasks, which typically require hard-to-obtain, time-consuming manually-annotated segmentation labels for training. This paper introduces three inherently-explainable classifiers to tackle both of these problems as one. The localisation heatmaps provided by the networks - representing the models' focus areas and being used in classification decision-making - can be directly interpreted, without requiring any post-hoc methods to derive information for model explanation. The models are trained by using the input image and only the classification labels as groundtruth in a supervised fashion - without using any information about the location of the region of interest (i.e. the segmentation labels), making the segmentation training of the models weakly-supervised through classification labels. The final segmentation of the regions of interest is obtained by thresholding these heatmaps. The models were employed for the task of multi-class brain tumour classification using two different datasets, resulting in the best F1-score of 0.93 for the supervised classification task while securing a median Dice score of 0.67 ± 0.08 for the weakly-supervised segmentation task. Furthermore, the obtained accuracy on a subset of tumour-only images outperformed the state-of-the-art glioma tumour grading binary classifiers with the best model achieving 98.7% accuracy. Copyright © 2022, The Autho

关键词： Magnetic resonance imaging

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Micdir: Multi-Scale Inverse-Consistent Deformable Image Registration Using Unetmss with Self-Constructing Graph Latent

SSRN

引用

SSRN 2022年

作者： Chatterjee, Soumick Bajaj, Himanshi Siddiquee, Istiyak H. Subbarayappa, Nandish Bandi Simon, Steve Shashidhar, Suraj Bangalore Speck, Oliver Nürnberger, Andreas Faculty of Computer Science Otto von Guericke University Magdeburg Germany Data and Knowledge Engineering Group Otto von Guericke University Magdeburg Germany Department of Biomedical Magnetic Resonance Otto von Guericke University Magdeburg Germany German Center for Neurodegenerative Disease Magdeburg Germany Center for Behavioral Brain Sciences Magdeburg Germany Leibniz Institute for Neurobiology Magdeburg Germany

Image registration is the process of bringing different images into a common coordinate system - a technique widely used in various applications of computer vision, such as remote sensing, image retrieval, and most commonly in medical imaging. Deep Learning based techniques have been applied successfully to tackle various complex medical image processing problems, including medical image registration. Over the years, several image registration techniques have been proposed using deep learning. Deformable image registration techniques such as Voxelmorph have been successful in capturing finer changes and providing smoother deformations. However, Voxelmorph, as well as ICNet and FIRE, do not explicitly encode global dependencies (i.e. the overall anatomical view of the supplied image) and therefore can not track large deformations. In order to tackle the aforementioned problems, this paper extends the Voxelmorph approach in three different ways. To improve the performance in case of small as well as large deformations, supervision of the model at different resolutions have been integrated using a multi-scale UNet. To support the network to learn and encode the minute structural co-relations of the given image-pairs, a self-constructing graph network (SCGNet) has been used as the latent of the multi-scale UNet - which can improve the learning process of the model and help the model to generalise better. And finally, to make the deformations inverse-consistent, cycle consistency loss has been employed. On the task of registration of brain MRIs, the proposed method achieved significant improvements over ANTs and VoxelMorph, obtaining a Dice score of 0.8013±0.0243 for intramodal and 0.6211±0.0309 for intermodal, while VoxelMorph achieved 0.7747±0.0260 and0.6071±0.0510, respectively. © 2022, The Authors. All rights reserved.

关键词： Image registration

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Automated SSIM Regression for Detection and Quantification of Motion Artefacts in Brain MR Images

arXiv

引用

arXiv 2022年

作者： Sciarra, Alessandro Chatterjee, Soumick Dünnwald, Max Placidi, Giuseppe Nürnberger, Andreas Speck, Oliver Oeltze-Jafra, Steffen The Medicine and Digitalization - MedDigit Group Department of Neurology Medical Faculty University Hospital Magdeburg Germany the Department of Biomedical Magnetic Resonance Faculty of Natural Sciences Otto von Guericke University Germany The Data and Knowledge Engineering Group Faculty of Computer Science Otto von Guericke University Germany The Genomics Research Centre Human Technopole Milan Italy The Faculty of Computer Science Otto von Guericke University Germany The Department of Life Health and Environmental Sciences University of L'Aquila Italy The Center for Behavioral Brain Sciences Magdeburg Germany The German Center for Neurodegenerative Disease Magdeburg Germany

Motion artefacts in magnetic resonance brain images can have a strong impact on diagnostic confidence. The assessment of MR image quality is fundamental before proceeding with the clinical diagnosis. Motion artefacts can alter the delineation of structures such as the brain, lesions or tumours and may require a repeat scan. Otherwise, an inaccurate (e.g. correct pathology but wrong severity) or incorrect diagnosis (e.g. wrong pathology) may occur."Image quality assessment" as a fast, automated step right after scanning can assist in deciding if the acquired images are diagnostically sufficient. An automated image quality assessment based on the structural similarity index (SSIM) regression through a residual neural network is proposed in this work. Additionally, a classification into different groups - by subdividing with SSIM ranges - is evaluated. Importantly, this method predicts SSIM values of an input image in the absence of a reference ground truth image. The networks were able to detect motion artefacts, and the best performance for the regression and classification task has always been achieved with ResNet-18 with contrast augmentation. The mean and standard deviation of residuals' distribution were µ = −0.0009 and σ = 0.0139, respectively. Whilst for the classification task in 3, 5 and 10 classes, the best accuracies were 97, 95 and 89%, respectively. The results show that the proposed method could be a tool for supporting neuro-radiologists and radiographers in evaluating image quality quickly. Copyright © 2022, The Authors. All rights reserved.

关键词： Image quality

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SVT-Net: Super Light-Weight Sparse Voxel Transformer for Large Scale Place Recognition

arXiv

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arXiv 2021年

作者： Fan, Zhaoxin Song, Zhenbo Liu, Hongyan Lu, Zhiwu He, Jun Du, Xiaoyong Key Laboratory of Data Engineering Knowledge Engineering of MOE School of Information Renmin University of China Beijing100872 China Gaoling School of Artificial Intelligence Renmin University of China Beijing100872 China School of Computer Science and Engineering Nanjing University of Science and Technology Nanjing210094 China Department of Management Science and Engineering Tsinghua University Beijing100084 China

Simultaneous Localization and Mapping (SLAM) and Autonomous Driving are becoming increasingly more important in recent years. Point cloud-based large scale place recognition is the spine of them. While many models have been proposed and have achieved acceptable performance by learning short-range local features, they always skip long-range contextual properties. Moreover, the model size also becomes a serious shackle for their wide applications. To overcome these challenges, we propose a super light-weight network model termed SVT-Net. On top of the highly efficient 3D Sparse Convolution (SP-Conv), an Atom-based Sparse Voxel Transformer (ASVT) and a Cluster-based Sparse Voxel Transformer (CSVT) are proposed respectively to learn both short-range local features and long-range contextual features. Consisting of ASVT and CSVT, SVT-Net can achieve state-of-the-art performance in terms of both recognition accuracy and running speed with a super-light model size (0.9M parameters). Meanwhile, for the purpose of further boosting efficiency, we introduce two simplified versions, which also achieve state-of-the-art performance and further reduce the model size to 0.8M and 0.4M respectively. Copyright © 2021, The Authors. All rights reserved.

关键词： Machine learning

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On Aggregation in Ensembles of Multilabel Classifiers

arXiv

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arXiv 2020年

作者： Nguyen, Vu-Linh Hüllermeier, Eyke Rapp, Michael Mencía, Eneldo Loza Fürnkranz, Johannes Heinz Nixdorf Institute Department of Computer Science Paderborn University Germany Knowledge Engineering Group TU Darmstadt Germany Computational Data Analytics Group JKU Linz Austria

While a variety of ensemble methods for multilabel classification have been proposed in the literature, the question of how to aggregate the predictions of the individual members of the ensemble has received little attention so far. In this paper, we introduce a formal framework of ensemble multilabel classification, in which we distinguish two principal approaches: "predict then combine" (PTC), where the ensemble members first make loss minimizing predictions which are subsequently combined, and "combine then predict" (CTP), which first aggregates information such as marginal label probabilities from the individual ensemble members, and then derives a prediction from this aggregation. While both approaches generalize voting techniques commonly used for multilabel ensembles, they allow to explicitly take the target performance measure into account. Therefore, concrete instantiations of CTP and PTC can be tailored to concrete loss functions. Experimentally, we show that standard voting techniques are indeed outperformed by suitable instantiations of CTP and PTC, and provide some evidence that CTP performs well for decomposable loss functions, whereas PTC is the better choice for non-decomposable losses. Copyright © 2020, The Authors. All rights reserved.

关键词： Forecasting

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The minority matters: a diversity-promoting collaborative metric learning algorithm 22

The minority matters: a diversity-promoting collaborative me...

引用

Proceedings of the 36th International Conference on Neural Information Processing Systems

作者： Shilong Bao Qianqian Xu Zhiyong Yang Yuan He Xiaochun Cao Qingming Huang State Key Laboratory of Information Security Institute of Information Engineering CAS and School of Cyber Security University of Chinese Academy of Sciences Key Lab. of Intelligent Information Processing Institute of Computing Technology CAS School of Computer Science and Tech. University of Chinese Academy of Sciences Alibaba Group School of Cyber Science and Technology Shenzhen Campus Sun Yat-sen University Key Lab. of Intelligent Information Processing Institute of Computing Technology CAS and School of Computer Science and Tech. University of Chinese Academy of Sciences and Key Laboratory of Big Data Mining and Knowledge Management CAS and Peng Cheng Laboratory

ISBN: (纸本)9781713871088

Collaborative Metric Learning (CML) has recently emerged as a popular method in recommendation systems (RS), closing the gap between metric learning and Collaborative Filtering. Following the convention of RS, existing methods exploit unique user representation in their model design. This paper focuses on a challenging scenario where a user has multiple categories of interests. Under this setting, we argue that the unique user representation might induce preference bias, especially when the item category distribution is imbalanced. To address this issue, we propose a novel method called Diversity-Promoting Collaborative Metric Learning (DPCML), with the hope of considering the commonly ignored minority interest of the user. The key idea behind DPCML is to include a multiple set of representations for each user in the system. Based on this embedding paradigm, user preference toward an item is aggregated from different embeddings by taking the minimum item-user distance among the user embedding set. Furthermore, we observe that the diversity of the embeddings for the same user also plays an essential role in the model. To this end, we propose a Diversity Control Regularization Scheme (DCRS) to accommodate the multi-vector representation strategy better. Theoretically, we show that DPCML could generalize well to unseen test data by tackling the challenge of the annoying operation that comes from the minimum value. Experiments over a range of benchmark datasets speak to the efficacy of DPCML.

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