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IEEE Annual Joint Conference: INFOCOM, IEEE computer and Communications Societies

作者： Yuanxing Zhang Pengyu Zhao Kaigui Bian Yunxin Liu Lingyang Song Xiaoming Li School of Electronics Engineering and Computer Science Peking University Beijing China National Engineering Laboratory for Big Data Analysis and Applications Beijing China Microsoft Research Beijing China

360-degree videos have gained more popularity in recent years, owing to the great advance of panoramic cameras and head-mounted devices. However, as 360-degree videos are usually in high resolution, transmitting the content requires extremely high bandwidth. To protect the Quality of Experience (QoE) of users, researchers have proposed tile-based 360-degree video streaming systems that allocate high/low bit rates to selected tiles of video frames for streaming over the limited bandwidth. It is challenging to determine which tiles should be allocated with a high/low rate, because (1) the video playbacks include too many features that dynamically change over time when making the rate allocation; (2) most of the state-of-the-art systems focus on a fixed set of heuristics to optimize a specific QoE objective, while users may have various QoE objectives that need to be optimized in different ways. This paper presents a Deep Reinforcement Learning (DRL) based framework for 360-degree video streaming, named DRL360. The DRL360 framework helps improve the system performance by jointly optimizing multiple QoE objectives across a broad set of dynamic features. The DRL-based model adaptively allocates rates for the tiles of the future video frames based on the observations collected by client video players. We compare the proposed DRL360 to the existing systems by trace-driven evaluations as well as conducting a realworld experiment over a wide variety of network conditions. Evaluation results reveal that DRL360 can adapt to all considered scenarios, and outperform the state-of-the-art approaches by 20%-30% on average given different QoE objectives.

关键词： Streaming media Quality of experience Resource management Bandwidth Adaptation models Reinforcement learning Bit rate

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Serial-EMD: Fast empirical mode decomposition method for multi-dimensional signals based on serialization

arXiv

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arXiv 2021年

作者： Zhang, Jin Feng, Fan Marti-Puig, Pere Caiafa, Cesar F. Sun, Zhe Duan, Feng Solé-Casals, Jordi College of Computer Science Nankai University Tianjin300071 China College of Artificial Intelligence Nankai University Tianjin300350 China Data and Signal Processing Group University of Vic—Central University of Catalonia Catalonia Vic08500 Spain Instituto Argentino de Radioastronomía CONICET CCT La Plata CIC-PBA UNLP V. Elisa1894 Argentina Tensor Learning Team Center for Advanced Intelligence Project RIKEN Tokyo103-0027 Japan Computational Engineering Applications Unit Head Office for Information Systems and Cybersecurity RIKEN Saitama351-0198 Japan

Empirical mode decomposition (EMD) has developed into a prominent tool for adaptive, scale-based signal analysis in various fields like robotics, security and biomedical engineering. Since the dramatic increase in amount of data puts forward higher requirements for the capability of real-time signal analysis, it is difficult for existing EMD and its variants to trade off the growth of data dimension and the speed of signal analysis. In order to decompose multi-dimensional signals at a faster speed, we present a novel signal-serialization method (serial-EMD), which concatenates multi-variate or multi-dimensional signals into a one-dimensional signal and uses various one-dimensional EMD algorithms to decompose it. To verify the effects of the proposed method, synthetic multi-variate time series, artificial 2D images with various textures and real-world facial images are tested. Compared with existing multi-EMD algorithms, the decomposition time becomes significantly reduced. In addition, the results of facial recognition with Intrinsic Mode Functions (IMFs) extracted using our method can achieve a higher accuracy than those obtained by existing multi-EMD algorithms, which demonstrates the superior performance of our method in terms of the quality of IMFs. Furthermore, this method can provide a new perspective to optimize the existing EMD algorithms, that is, transforming the structure of the input signal rather than being constrained by developing envelope computation techniques or signal decomposition methods. In summary, the study suggests that the serial-EMD technique is a highly competitive and fast alternative for multi-dimensional signal analysis. Copyright © 2021, The Authors. All rights reserved.

关键词： Signal analysis

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Chemical identification and indexing in full-text articles: an overview of the NLM-Chem track at BioCreative VII

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database 2023年第2023期2023卷 baad005-baad005页

作者： Leaman, Robert Islamaj, Rezarta Adams, Virginia Alliheedi, Mohammed A. Almeida, João Rafael Antunes, Rui Bevan, Robert Chang, Yung-Chun Erdengasileng, Arslan Hodgskiss, Matthew Ida, Ryuki Kim, Hyunjae Li, Keqiao Mercer, Robert E. Mertová, Lukrécia Mobasher, Ghadeer Shin, Hoo-Chang Sung, Mujeen Tsujimura, Tomoki Yeh, Wen-Chao Lu, Zhiyong National Center for Biotechnology Information (NCBI) National Library of Medicine National Institutes of Health 8600 Rockville Pike Bethesda 20894 MD United States Nvidia 2788 San Tomas Expressway Santa Clara 95051 CA United States Department of Computer Science Al Baha University 4781 King Fahd Rd Al Aqiq 65779 Saudi Arabia Department of Electronics Telecommunications and Informatics (DETI) Institute of Electronics and Informatics Engineering of Aveiro (IEETA) University of Aveiro Campus Universitário de Santiago Aveiro 3810-193 Portugal Department of Information and Communications Technologies University of A Coruña Camiño Do Lagar de Castro A Coruña 15008 Spain Informatics Department Medicines Discovery Catapult Alderley Park Block 35 Mereside Macclesfield SK10 4ZF United Kingdom Graduate Institute of Data Science Taipei Medical University No. 172-1 Section 2 Keelung Rd Da’an District Taipei City 106 Taiwan Department of Statistics Florida State University 117 N. Woodward Ave Tallahassee 32306 FL United States Computational Intelligence Laboratory Toyota Technological Institute 2-12-1 Hisakata Tempaku-ku Nagoya Aichi 468-8511 Japan Department of Computer Science and Engineering Korea University 145 Anam-ro Seongbuk-gu Seoul 02841 South Korea Department of Computer Science The University of Western Ontario Middlesex College Room 355 London N6A 5B7 ON Canada Scientific Databases and Visualization Group Heidelberg Institute for Theoretical Studies (HITS GGmbH) Schloss-Wolfsbrunnenweg 35 Heidelberg 69118 Germany Institute of Computer Science Heidelberg University Im Neuenheimer Feld 205 Heidelberg 69120 Germany Institute of Information Systems and Applications National Tsing Hua University No. 101 Section 2 Kuang-Fu Road Hsinchu 30013 Taiwan

The BioCreative National Library of Medicine (NLM)-Chem track calls for a community effort to fine-tune automated recognition of chemical names in the biomedical literature. Chemicals are one of the most searched biomedical entities in PubMed, and - as highlighted during the coronavirus disease 2019 pandemic - their identification may significantly advance research in multiple biomedical subfields. While previous community challenges focused on identifying chemical names mentioned in titles and abstracts, the full text contains valuable additional detail. We, therefore, organized the BioCreative NLM-Chem track as a community effort to address automated chemical entity recognition in full-text articles. The track consisted of two tasks: (i) chemical identification and (ii) chemical indexing. The chemical identification task required predicting all chemicals mentioned in recently published full-text articles, both span [i.e. named entity recognition (NER)] and normalization (i.e. entity linking), using Medical Subject Headings (MeSH). The chemical indexing task required identifying which chemicals reflect topics for each article and should therefore appear in the listing of MeSH terms for the document in the MEDLINE article indexing. This manuscript summarizes the BioCreative NLM-Chem track and post-challenge experiments. We received a total of 85 submissions from 17 teams worldwide. The highest performance achieved for the chemical identification task was 0.8672 F-score (0.8759 precision and 0.8587 recall) for strict NER performance and 0.8136 F-score (0.8621 precision and 0.7702 recall) for strict normalization performance. The highest performance achieved for the chemical indexing task was 0.6073 F-score (0.7417 precision and 0.5141 recall). This community challenge demonstrated that (i) the current substantial achievements in deep learning technologies can be utilized to improve automated prediction accuracy further and (ii) the chemical indexing task is substanti

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DeePMD-kit v3: A Multiple-Backend Framework for Machine Learning Potentials

arXiv

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arXiv 2025年

作者： Zeng, Jinzhe Zhang, Duo Peng, Anyang Zhang, Xiangyu He, Sensen Wang, Yan Liu, Xinzijian Bi, Hangrui Li, Yifan Cai, Chun Zhang, Chengqian Du, Yiming Zhu, Jia-Xin Mo, Pinghui Huang, Zhengtao Zeng, Qiyu Shi, Shaochen Qin, Xuejian Yu, Zhaoxi Luo, Chenxing Ding, Ye Liu, Yun-Pei Shi, Ruosong Wang, Zhenyu Bore, Sigbjørn Løland Chang, Junhan Deng, Zhe Ding, Zhaohan Han, Siyuan Jiang, Wanrun Ke, Guolin Liu, Zhaoqing Lu, Denghui Muraoka, Koki Oliaei, Hananeh Singh, Anurag Kumar Que, Haohui Xu, Weihong Xu, Zhangmancang Zhuang, Yong-Bin Dai, Jiayu Giese, Timothy J. Jia, Weile Xu, Ben York, Darrin M. Zhang, Linfeng Wang, Han School of Artificial Intelligence and Data Science Unversity of Science and Technology of China Hefei China AI for Science Institute Beijing100080 China DP Technology Beijing100080 China Academy for Advanced Interdisciplinary Studies Peking University Beijing100871 China State Key Lab of Processors Institute of Computing Technology Chinese Academy of Sciences Beijing100871 China University of Chinese Academy of Sciences Beijing China Baidu Inc. Beijing China Department of Computer Science University of Toronto TorontoON Canada Department of Chemistry Princeton University PrincetonNJ08540 United States University of Chinese Academy of Sciences Beijing100871 China State Key Laboratory of Physical Chemistry of Solid Surfaces iChEM College of Chemistry and Chemical Engineering Xiamen University Xiamen361005 China College of Integrated Circuits Hunan University Changsha410082 China State Key Laboratory of Advanced Technology for Materials Synthesis and Processing Center for Smart Materials and Device Integration School of Material Science and Engineering Wuhan University of Technology Wuhan430070 China College of Science National University of Defense Technology Changsha410073 China Hunan Key Laboratory of Extreme Matter and Applications National University of Defense Technology Changsha410073 China ByteDance Research Beijing100098 China Ningbo Institute of Materials Technology and Engineering Chinese Academy of Sciences Ningbo315201 China College of Materials Science and Opto-Electronic Technology University of Chinese Academy of Sciences Beijing100049 China Key Laboratory of Theoretical and Computational Photochemistry of Ministry of Education College of Chemistry Beijing Normal University Beijing100875 China Department of Geosciences Princeton University PrincetonNJ08544 United States Department of Applied Physics and Applied Mathematics Columbia University New YorkNY10027 United States IKKEM Fujian Xiamen361005 China Graduate

In recent years, machine learning potentials (MLPs) have become indispensable tools in physics, chemistry, and materials science, driving the development of software packages for molecular dynamics (MD) simulations and related applications. These packages, typically built on specific machine learning frameworks such as TensorFlow, PyTorch, or JAX, face integration challenges when advanced applications demand communication across different frameworks. The previous TensorFlow-based implementation of DeePMD-kit exemplified these limitations. In this work, we introduce DeePMD-kit version 3, a significant update featuring a multi-backend framework that supports TensorFlow, PyTorch, JAX, and PaddlePaddle backends, and demonstrate the versatility of this architecture through the integration of other MLPs packages and of Differentiable Molecular Force Field. This architecture allows seamless backend switching with minimal modifications, enabling users and developers to integrate DeePMD-kit with other packages using different machine learning frameworks. This innovation facilitates the development of more complex and interoperable workflows, paving the way for broader applications of MLPs in scientific research. Copyright © 2025, The Authors. All rights reserved.

关键词： Molecular dynamics

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A practical guide to machine learning interatomic potentials – Status and future

arXiv

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arXiv 2025年

作者： Jacobs, Ryan Morgan, Dane Attarian, Siamak Meng, Jun Shen, Chen Wu, Zhenghao Xie, Clare Yijia Yang, Julia H. Artrith, Nongnuch Blaiszik, Ben Ceder, Gerbrand Choudhary, Kamal Csanyi, Gabor Cubuk, Ekin Dogus Deng, Bowen Drautz, Ralf Fu, Xiang Godwin, Jonathan Honavar, Vasant Isayev, Olexandr Johansson, Anders Kozinsky, Boris Martiniani, Stefano Ong, Shyue Ping Poltavsky, Igor Schmidt, K.J. Takamoto, So Thompson, Aidan Westermayr, Julia Wood, Brandon M. Department of Materials Science and Engineering University of Wisconsin-Madison MadisonWI55705 United States Harvard University Center for the Environment Harvard University CambridgeMA02138 United States John A. Paulson School of Engineering and Applied Sciences Harvard University CambridgeMA02138 United States Materials Chemistry and Catalysis Debye Institute for Nanomaterials Science Utrecht University Utrecht3584 CG Netherlands Globus University of Chicago ChicagoIL United States Data Science and Learning Division Argonne National Laboratory LemontIL United States Department of Materials Science and Engineering University of California BerkeleyCA94720 United States Materials Sciences Division Lawrence Berkeley National Laboratory CA94720 United States Material Measurement Laboratory National Institute of Standards and Technology GaithersburgMD20899 United States Department of Engineering University of Cambridge CambridgeCB2 1PZ United Kingdom Google DeepMind Mountain ViewCA United States Ruhr-Universität Bochum Bochum44780 Germany Meta United States Orbital Materials London United Kingdom Department of Computer Science and Engineering The Pennsylvania State University University ParkPA United States College of Information Sciences and Technology The Pennsylvania State University University ParkPA United States Artificial Intelligence Research Laboratory The Pennsylvania State University University ParkPA United States Center for Artificial Intelligence Foundations and Scientific Applications The Pennsylvania State University University ParkPA United States Department of Chemistry Mellon College of Science Carnegie Mellon University PittsburghPA15213 United States Computational Biology Department School of Computer Science Carnegie Mellon University PittsburghPA15213 United States Courant Institute of Mathematical Sciences New York University New YorkNY10003 United States Center for Soft Matter Research Department of P

The rapid development and large body of literature on machine learning interatomic potentials (MLIPs) can make it difficult to know how to proceed for researchers who are not experts but wish to use these tools. The spirit of this review is to help such researchers by serving as a practical, accessible guide to the state-of-the-art in MLIPs. This review paper covers a broad range of topics related to MLIPs, including (i) central aspects of how and why MLIPs are enablers of many exciting advancements in molecular modeling, (ii) the main underpinnings of different types of MLIPs, including their basic structure and formalism, (iii) the potentially transformative impact of universal MLIPs for both organic and inorganic systems, including an overview of the most recent advances, capabilities, downsides, and potential applications of this nascent class of MLIPs, (iv) a practical guide for estimating and understanding the execution speed of MLIPs, including guidance for users based on hardware availability, type of MLIP used, and prospective simulation size and time, (v) a manual for what MLIP a user should choose for a given application by considering hardware resources, speed requirements, energy and force accuracy requirements, as well as guidance for choosing pre-trained potentials or fitting a new potential from scratch, (vi) discussion around MLIP infrastructure, including sources of training data, pre-trained potentials, and hardware resources for training, (vii) summary of some key limitations of present MLIPs and current approaches to mitigate such limitations, including methods of including long-range interactions, handling magnetic systems, and treatment of excited states, and finally (viii) we finish with some more speculative thoughts on what the future holds for the development and application of MLIPs over the next 3-10+ years. © 2025, CC BY.

关键词： Digital storage

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The wisdom of crowds versus the madness of mobs: An evolutionary model of bias, polarization, and other challenges to collective intelligence

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Collective Intelligence 2022年第1期1卷 26339137221104785页

作者： Andrew W Lo Ruixun Zhang MIT Laboratory for Financial Engineering Cambridge MA USA MIT Sloan School of Management Cambridge MA USA MIT Computer Science and Artificial Intelligence Laboratory Cambridge MA USA Santa Fe Institute Santa Fe NM USA School of Mathematical Sciences Peking University Beijing China Center for Statistical Science Peking University Beijing China National Engineering Laboratory for Big Data Analysis and Applications Peking University Beijing China

Despite its success in financial markets and other domains, collective intelligence seems to fall short in many critical contexts, including infrequent but repeated financial crises, political polarization and deadlock, and various forms of bias and discrimination. We propose an evolutionary framework that provides fundamental insights into the role of heterogeneity and feedback loops in contributing to failures of collective intelligence. The framework is based on a binary choice model of behavior that affects fitness; hence, behavior is shaped by evolutionary dynamics and stochastic changes in environmental conditions. We derive collective intelligence as an emergent property of evolution in this framework, and also specify conditions under which it fails. We find that political polarization emerges in stochastic environments with reproductive risks that are correlated across individuals. Bias and discrimination emerge when individuals incorrectly attribute random adverse events to observable features that may have nothing to do with those events. In addition, path dependence and negative feedback in evolution may lead to even stronger biases and levels of discrimination, which are locally evolutionarily stable strategies. These results suggest potential policy interventions to prevent such failures by nudging the “madness of mobs” towards the “wisdom of crowds” through targeted shifts in the environment.

关键词： Collective intelligence political polarization bias discrimination evolutionarily stable strategy group selection

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A novel Differential Evolution approach to scheduling the freight trains in intervals of passenger trains

A novel Differential Evolution approach to scheduling the fr...

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IEEE International Conference on Systems, Man and Cybernetics

作者： Jeng-Shyang Pan Zhenyu Meng Shaoquan Ni Shu-Chuan Chu Fujian Provincial Key Lab of Big Data Mining and Applications Fujian University of Technology Fuzhou China School of Transportation and Logistics Southwest Jiaotong University Chengdu China School of Computer Science and Technology Shandong University of Science and Technology Qingdao China

Differential Evolution (DE) is a very simple but powerful Evolutionary Algorithm (EA) for real-world applications. There are two aspects affecting the overall optimization performance significantly, one is parameter control scheme and the other is trial vector generation strategy. As all the control parameters are employed in generating trial vectors, from this perspective of view, the trial vector generation strategy dominates the overall optimization performance. Therefore, trial vector generation strategies are often designed first, and then the corresponding parameter control schemes are well-tuned thereafter. Both of them constitute the main body of a new DE variant. Here in the paper, a novel DE variant with a new designed trial vector generation strategy as well as novel parameter control scheme is proposed to tackle freight trains scheduling problem. By incorporating both a time-stamp mechanism of the external archive and a novel parameter control scheme, the new algorithm can secure better optimization performance not only on man-made benchmarks but also on real-world applications. Both the man-made benchmarks from Congress on Evolutionary Computation (CEC) test suite and the real-world freight train scheduling problem are employed in the validation of the new DE variant. The experiment results show that it is competitive with other state-of-the-art DE techniques for these optimization problems.

关键词： Benchmark testing Scheduling Evolutionary computation Rail transportation Processor scheduling Simulated annealing

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QUATRE Algorithm with Sort Strategy for Global Optimization in Comparison with DE and PSO Variants 4th

QUATRE Algorithm with Sort Strategy for Global Optimization ...

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4th Euro-China Conference on Intelligent data Analysis and applications, ECC 2017

作者： Pan, Jeng-Shyang Meng, Zhenyu Chu, Shu-Chuan Roddick, John F. Fujian Provincial Key Lab of Big Data Mining and Applications Fujian University of Technology Fuzhou China Department of Computer Science and Technology Harbin Institute of Technology Shenzhen Graduate School Shenzhen China School of Computer Science Engineering and Mathematics Flinders University Adelaide Australia

ISBN: (纸本)9783319685267

Optimization algorithm in swarm intelligence is getting more and more prevalent both in theoretical field and in real-world applications. Many nature-inspired algorithms in this domain have been proposed and employed in different applications. In this paper, a new QUATRE algorithm with sort strategy is proposed for global optimization. QUATRE algorithm is a simple but powerful stochastic optimization algorithm proposed in 2016 and it tackles the representational/positional bias existing in DE structure. Here a sort strategy is used for the enhancement of the canonical QUATRE algorithm. This advancement is verified on CEC2013 test suite for real-parameter optimization and also is contrasted with several state-of-the-art algorithms including Particle Swarm Optimization (PSO) variants, Differential Evolution (DE) variants on COCO framework under BBOB2009 benchmarks. Experiment results show that the proposed QUATRE algorithm with sort strategy is competitive with the contrasted algorithms. © 2018, Springer International Publishing AG.

关键词： Swarm intelligence

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Multi-view ontology alignment visualization (MOAV): A human-cognition based ontology alignment visualization technique

Journal of Network Intelligence

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Journal of Network Intelligence 2020年第4期5卷 198-210页

作者： Chen, Jie Zhang, Jie Xue, Xingsi Huang, Yikun Fujian Provincial Key Laboratory of Big Data Mining and Applications Fujian University of Technology No.33 Xueyuan Road University Town Minhou FuzhouFujian350118 China School of Computer Science and Engineering Yulin Normal University No.299 Education Middle Road Yulin CityGuanxi Province537000 China Fujian Provincial Key Laboratory of Big Data Mining and Applications Intelligent Information Processing Research Center Fujian University of Technology No.33 Xueyuan Road University Town Minhou FuzhouFujian350118 China Guangxi Key Laboratory of Automatic Detecting Technology and Instruments Guilin University of Electronic Technology No.1 Jinji Road Guangxi Guilin541004 China Department of Information Technology Concord University College Fujian Normal University No.68 Xueyuan Road University Town Minhou FuzhouFujian350117 China

To further improve the quality of ontology alignment, it is necessary for an ontology matcher to introduce a user’s knowledge into its automatic matching process, which yields the development of interactive ontology matching techniques. Since validating problematic entity correspondences is a difficult cognition task, user interaction based on Ontology Alignment Visualization (OAV) has become the critical component of an interactive ontology matcher, which directly affects the quality of validating result and the efficiency of validating process. The existing OAV tools are mainly developed based on their designers’ subjective feelings and experiences, which do not take into consideration the law of human cognition. To improve the efficiency of the ontology alignment validating process, in this paper, a Multi-view OAV (MOAV) is proposed, which synthetically utilizes the human cognitive theory-information visualization and human-computer inter-action. The experiment utilizes the Ontology Alignment Evaluation Initiative (OAEI)’s benchmark to test the performance of our proposal, and the experimental results show that MOAV can effectively improve a user’s validating efficiency. © 2020, Taiwan Ubiquitous Information. All rights reserved.

关键词： Visualization

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Matching Biomedical Ontologies with Long Short-Term Memory Networks

Matching Biomedical Ontologies with Long Short-Term Memory N...

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IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

作者： Chao Jiang Xingsi Xue Intelligent Information Processing Research Center Fujian University of Technology Fuzhou Fujian China School of Computer Science and Mathematics Fujian University of Technology Fuzhou Fujian China Fujian Provincial Key Laboratory of Big Data Mining and Applications Fujian University of Technology Fuzhou Fujian China Guangxi Key Laboratory of Automatic Detecting Technology and Instruments Guilin University of Electronic Technology Guilin Guangxi China Fujian Key Lab for Automotive Electronics and Electric Drive Fujian University of Technology Fuzhou Fujian China

ISBN: (数字)9781728162157

ISBN: (纸本)9781728162164

Semantic Web (SW) has attracted the increasing attention of researchers, which facilitates people to link and handle various data. Ontology is the kernel technique of SW, and biomedical ontology is a state-of-art biomedical knowledge modeling technique, which formally defines the biomedical concepts and their relationships. However, the same biomedical concepts in different biomedical ontologies could be defined in various contexts or with different terms, which yields the biomedical ontology heterogeneity problem. It is crucial to find mapping among heterogeneity concepts of different biomedical ontologies for bridging the semantic gaps, which is the so-called biomedical ontology matching. Biomedical ontology matching problem is an open challenge due to the rich semantic meaning and the flexible representation on a biomedical concept. To address this challenging problem, in this work, it is regarded as a binary classification problem, and a Long Short-Term Memory Networks (LSTM)-based ontology matching technique is proposed to solve it. Our proposal improves the quality of the alignment by introducing the char-embedding technique, which takes into account the semantic and context information of concepts. The comparing results with OAEI's participants show the effectiveness of our proposal.

关键词： Ontologies Semantics Logic gates Training Human anatomy Proposals Biomedical measurement

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