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arXiv 2024年

作者： Bassi, Pedro R.A.S. Li, Wenxuan Tang, Yucheng Isensee, Fabian Wang, Zifu Chen, Jieneng Chou, Yu-Cheng Roy, Saikat Kirchhoff, Yannick Rokuss, Maximilian Huang, Ziyan Ye, Jin He, Junjun Wald, Tassilo Ulrich, Constantin Baumgartner, Michael Maier-Hein, Klaus H. Jaeger, Paul Ye, Yiwen Xie, Yutong Zhang, Jianpeng Chen, Ziyang Xia, Yong Xing, Zhaohu Zhu, Lei Sadegheih, Yousef Bozorgpour, Afshin Kumari, Pratibha Azad, Reza Merhof, Dorit Shi, Pengcheng Ma, Ting Du, Yuxin Bai, Fan Huang, Tiejun Zhao, Bo Wang, Haonan Li, Xiaomeng Gu, Hanxue Dong, Haoyu Yang, Jichen Mazurowski, Maciej A. Gupta, Saumya Wu, Linshan Zhuang, Jiaxin Chen, Hao Roth, Holger Xu, Daguang Blaschko, Matthew B. Decherchi, Sergio Cavalli, Andrea Yuille, Alan L. Zhou, Zongwei Department of Computer Science Johns Hopkins University United States Department of Pharmacy and Biotechnology University of Bologna Italy Center for Biomolecular Nanotechnologies Istituto Italiano di Tecnologia Italy NVIDIA United States Germany Germany ESAT-PSI KU Leuven Belgium Faculty of Mathematics and Computer Science Heidelberg University Germany HIDSS4Health - Helmholtz Information and Data Science School for Health Germany Shanghai Jiao Tong University China Shanghai Artificial Intelligence Laboratory China Pattern Analysis and Learning Group Department of Radiation Oncology Heidelberg University Hospital Germany DKFZ Germany School of Computer Science and Engineering Northwestern Polytechnical University China Australian Institute for Machine Learning The University of Adelaide Australia College of Computer Science and Technology Zhejiang University China Hong Kong University of Science and Technology Guangzhou China Hong Kong University of Science and Technology Hong Kong Faculty of Informatics and Data Science University of Regensburg Germany Faculty of Electrical Engineering and Information Technology RWTH Aachen University Germany Fraunhofer Institute for Digital Medicine MEVIS Germany Electronic & Information Engineering School Harbin Institute of Technology Shenzhen China China The Chinese University of Hong Kong Hong Kong Peking University China Department of Electrical and Computer Engineering Duke University United States Stony Brook University United States Department of Computer Science and Engineering Department of Chemical and Biological Engineering Division of Life Science Hong Kong University of Science and Technology Hong Kong Data Science and Computation Facility Fondazione Istituto Italiano di Tecnologia Italy Ecole Polytechnique Fédérale de Lausanne Switzerland

How can we test AI performance? This question seems trivial, but it isn’t. Standard benchmarks often have problems such as in-distribution and small-size test sets, oversimplified metrics, unfair comparisons, and short-term outcome pressure. As a consequence, good performance on standard benchmarks does not guarantee success in real-world scenarios. To address these problems, we present Touchstone, a large-scale collaborative segmentation benchmark of 9 types of abdominal organs. This benchmark is based on 5,195 training CT scans from 76 hospitals around the world and 5,903 testing CT scans from 11 additional hospitals. This diverse test set enhances the statistical significance of benchmark results and rigorously evaluates AI algorithms across out-of-distribution scenarios. We invited 14 inventors of 19 AI algorithms to train their algorithms, while our team, as a third party, independently evaluated these algorithms. In addition, we also evaluated pre-existing AI frameworks—which, differing from algorithms, are more flexible and can support different algorithms—including MONAI from NVIDIA, nnU-Net from DKFZ, and numerous other open-source frameworks. We are committed to expanding this benchmark to encourage more innovation of AI algorithms for the medical domain. Copyright © 2024, The Authors. All rights reserved.

关键词： Open systems

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The Power of Bamboo: On the Post-Compromise Security for Searchable Symmetric Encryption

arXiv

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arXiv 2024年

作者： Chen, Tianyang Xu, Peng Picek, Stjepan Luo, Bo Susilo, Willy Jin, Hai Liang, Kaitai National Engineering Research Center for Big Data Technology and System Services Computing Technology and System Lab China Hubei Key Laboratory of Distributed System Security Hubei Engineering Research Center on Big Data Security School of Cyber Science and Engineering China Cluster and Grid Computing Lab School of Computer Science and Technology China Huazhong University of Science and Technology Wuhan430074 China Digital Security Group Radboud University Nijmegen Netherlands Department of EECS Institute of Information Sciences The University of Kansas LawrenceKS United States Institute of Cybersecurity and Cryptology School of Computing and Information Technology University of Wollongong WollongongNSW2522 Australia Faculty of Electrical Engineering Mathematics and Computer Science Delft University of Technology Delft2628 CD Netherlands

Dynamic searchable symmetric encryption (DSSE) enables users to delegate the keyword search over dynamically updated encrypted databases to an honest-but-curious server without losing keyword privacy. This paper studies a new and practical security risk to DSSE, namely, secret key compromise (e.g., a user’s secret key is leaked or stolen), which threatens all the security guarantees offered by existing DSSE schemes. To address this open problem, we introduce the notion of searchable encryption with key-update (SEKU) that provides users with the option of non-interactive key updates. We further define the notion of post-compromise secure with respect to leakage functions to study whether DSSE schemes can still provide data security after the client’s secret key is compromised. We demonstrate that post-compromise security is achievable with a proposed protocol called "Bamboo". Interestingly, the leakage functions of Bamboo satisfy the requirements for both forward and backward security. We conduct a performance evaluation of Bamboo using a real-world dataset and compare its runtime efficiency with the existing forward-and-backward secure DSSE schemes. The result shows that Bamboo provides strong security with better or comparable performance. © 2024, CC BY.

关键词： Bamboo

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Generalised tangent stabilised nonlinear elasticity: An automated framework for controlling material and geometric instabilities

arXiv

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arXiv 2024年

作者： Poya, Roman Ortigosa, Rogelio Gil, Antonio J. Kim, Theodore Bonet, Javier Meshing Framework Simulation & Test Solutions Siemens Digital Industries Software Cambridge United Kingdom Multiphysics Simulation and Optimization Lab Technical University of Cartagena Cartagena Murcia Spain Zienkiewicz Centre for Modelling Data and AI Faculty of Science and Engineering Swansea University Bay Campus United Kingdom Computer Graphics Group Yale School of Engineering & Applied Science Yale University New HavenCT United States Barcelona Spain

Tangent stabilised large strain isotropic elasticity was recently proposed by Poya et al. [1] wherein by working directly with principal stretches the entire eigenstructure of constitutive and geometric/initial stiffness terms were found in closed-form, giving fresh insights into exact convexity conditions of highly non-convex functions in discrete settings. Consequently, owing to these newly found tangent eigenvalues an analytic tangent stabilisation was proposed (for common non-convex strain energies that exhibit material and/or geometric instabilities) bypassing incumbent numerical approaches routinely used in nonlinear finite element analysis. This formulation appears to be extremely robust for quasi-static simulation of complex deformations even with no load increments and time stepping while still capturing instabilities (similar to dynamic analysis) automatically in ways that are infeasible for path-following techniques in practice. In this work, we generalise the notion of tangent stabilised elasticity to virtually all known invariant formulations of nonlinear elasticity. We show that, closed-form eigen-decomposition of tangents is easily available irrespective of invariant formulation or integrity basis. In particular, we work out closed-form tangent eigensystems for isotropic Total Lagrangian deformation gradient (F)-based and right Cauchy-Green (C)-based as well as Updated Lagrangian left Cauchy-Green (b)-based formulations and present their exact convexity conditions postulated in terms of their corresponding tangent and initial stiffness eigenvalues. In addition, we introduce the notion of geometrically stabilised polyconvex large strain elasticity for models that are materially stable but exhibit geometric instabilities for whom we construct their initial stiffness in a spectrally-decomposed form analytically. We further extend this framework to the case of transverse isotropy where once again, closed-form tangent eigensystems are found for common tran

关键词： Stiffness

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A Deep Neural Network based Multimodal Video Recognition System for Caring

A Deep Neural Network based Multimodal Video Recognition Sys...

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IEEE International Conference on Human-Machine Systems

作者： Chao Yan Jiahua Xu Bastian Klopfer Andreas Nürnberger Data & Knowledge Engineering Group Faculty of Computer Science Otto von Guericke University Magdeburg Germany

ISBN: (数字)9781728158716

ISBN: (纸本)9781728158723

Home caring usually refers to taking care of the elder, the young kids and the patients at home, and this depends on both caregivers and caring systems. The system which can provide sufficient and accurate information to doctors or caregivers without a delay will bring benefits for all the persons who need to be cared and allow doctor or care givers to take right action based on the information immediately. Available corresponding products in the market mainly are some smart home devices or some medical facilities based on electroencephalo-graph (EEG), electrocardiograph (ECG) or blood pressure check, however, these parameters cannot give doctors, caregivers or family members a direct feedback. To address the problem, this paper introduces a deep learning based design - a visual recognition system developed for clinical monitoring which can supervise both the emotions and gestures of patients at the same time and give responsible persons instant and direct feedback so that the right treatment will be taken by them. This product uses a Raspberry Pi computer with its camera as hardware and implementing several deep learning models to fulfill three main functions which are: Facial Recognition, Emotion Detection and Pose Estimation onto a portable device, which enhances the utilization of the application and this brings more possibilities. Compared to theavailable products, this application emphasizes monitoring per-sons via visual analysis and gives more direct feedback all thetime instead of traditional ways which are not always timely or practical.

关键词： Faces Computational modeling Machine learning Face recognition Pose estimation Cameras Medical services

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Neurorehabilitation System in Virtual Reality with Low-Cost BCI Devices

Neurorehabilitation System in Virtual Reality with Low-Cost ...

引用

IEEE International Conference on Human-Machine Systems

作者： Jiahua Xu Tung-Lung Liu Zhenglei Wu Zheng Wu Yang Li Andreas Nürnberger Data & Knowledge Engineering Group Faculty of Computer Science Otto-von-Guericke University Magdeburg Germany

ISBN: (数字)9781728158716

ISBN: (纸本)9781728158723

Brain-computer interface (BCI) has gained great attention from the public due to its ability and portability for external devices control or neuron rehabilitation using EEG from scalps. virtual reality (VR) provides users an immersive interaction environment via human-machine interfaces (HMI).This paper proposes an motor imagery based real-time control system for rehabilitation by using low-cost BCI to control a robotic arm in VR.

关键词： Electroencephalography Real-time systems Manipulators Brain-computer interfaces Training Task analysis

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Nondestructive Chicken Egg Fertility Detection Using CNN-Transfer Learning Algorithms

arXiv

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arXiv 2023年

作者： Saifullah, Shoffan Drezewski, Rafal Yudhana, Anton Pranolo, Andri Kaswijanti, Wilis Suryotomo, Andiko Putro Putra, Seno Aji Khaliduzzaman, Alin Prabuwono, Anton Satria Japkowicz, Nathalie Institute of Computer Science AGH University of Krakow Krakow30-059 Poland Department of Informatics Universitas Pembangunan Nasional Veteran Yogyakarta Yogyakarta55281 Indonesia Center of Knowledge Engineering and Data Science Department of Electrical Engineering and Informatics Universitas Negeri Malang Malang65145 Indonesia Department of Electrical Engineering Universitas Ahmad Dahlan Yogyakarta55191 Indonesia College of Computer and Information Hohai University Nanjing211100 China Department of Informatics Faculty of Industrial Technology Universitas Ahmad Dahlan Yogyakarta55166 Indonesia Faculty of Agricultural Engineering and Technology Sylhet Agricultural University Sylhet3100 Bangladesh Faculty of Computing and Information Technology in Rabigh King Abdulaziz University Jeddah21589 Saudi Arabia Department of Computer Science American University WashingtonDC20016 United States

This study explored the application of CNN-Transfer Learning for nondestructive chicken egg fertility detection for precise poultry hatchery practices. Four models, VGG16, ResNet50, InceptionNet, and MobileNet, were trained and evaluated on a dataset (200 single egg images) using augmented images (rotation, flip, scale, translation, and reflection). The training results demonstrated that all models achieved high accuracy, indicating their ability to learn and classify chicken eggs’ fertility. However, variations in accuracy and performance were observed when these models were evaluated on the testing datasets. The InceptionNet exhibited the best overall performance, accurately classifying fertile and non-fertile eggs. It demonstrated excellent performance in all parameters of the evaluation metrics for both training and testing datasets. When evaluated on the testing datasets, it achieved an accuracy of 0.98, a sensitivity of 1 for detecting fertile eggs, and a specificity of 0.96 for identifying non-fertile eggs. The higher performance is attributed to its unique architecture, efficiently capturing features at different scales, which leads to improved accuracy and robustness. Further optimization and fine-tuning of the models might be necessary to address the limitations in accurately detecting fertile and non-fertile eggs using other models. This study highlighted the potential of CNN-transfer learning for nondestructive fertility detection and emphasized the need for further research to enhance the models’ capabilities and to ensure accurate *** Codes CS-Class: 68T07, 68T45, 68U10, ICT-Class: 94A08 © 2023, CC BY-SA.

关键词： Image classification

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Weakly-supervised segmentation using inherently-explainable classification models and their application to brain tumour classification

arXiv

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arXiv 2022年

作者： Chatterjee, Soumick Yassin, Hadya Dubost, Florian Nürnberger, Andreas Speck, Oliver Data and Knowledge Engineering Group Faculty of Computer Science Otto von Guericke University Magdeburg Germany Biomedical Magnetic Resonance Faculty of Nature Sciences Otto von Guericke University Magdeburg Germany Genomics Research Centre Human Technopole Milan Italy Institute for Medical Engineering Faculty of Electrical Engineering and Information Technology Otto von Guericke University Magdeburg Germany Department of Biomedical Data Science Stanford University StanfordCA United States Centre for Behavioural Brain Sciences Magdeburg Germany German Centre for Neurodegenerative Disease Magdeburg Germany

Deep learning models have shown their potential in recent years for several applications. However, most of the models are opaque in nature and difficult to trust due to their complex reasoning - commonly known as the black-box problem. Some fields, such as medicine, require a high degree of transparency to accept and adopt such technologies. Consequently, there is a movement towards creating explainable/interpretable models or applying post-hoc explainability/interpretability methods on classifiers to build trust in deep learning models. Moreover, deep learning methods can be used for segmentation tasks, which typically require hard-to-obtain, time-consuming manually-annotated segmentation labels for training. This paper introduces three inherently-explainable classifiers to tackle both of these problems as one. The localisation heatmaps provided by the networks - representing the models' focus areas and being used in classification decision-making - can be directly interpreted, without requiring any post-hoc methods to derive information for model explanation. The models are trained by using the input image and only the classification labels as groundtruth in a supervised fashion - without using any information about the location of the region of interest (i.e. the segmentation labels), making the segmentation training of the models weakly-supervised through classification labels. The final segmentation of the regions of interest is obtained by thresholding these heatmaps. The models were employed for the task of multi-class brain tumour classification using two different datasets, resulting in the best F1-score of 0.93 for the supervised classification task while securing a median Dice score of 0.67 ± 0.08 for the weakly-supervised segmentation task. Furthermore, the obtained accuracy on a subset of tumour-only images outperformed the state-of-the-art glioma tumour grading binary classifiers with the best model achieving 98.7% accuracy. Copyright © 2022, The Autho

关键词： Magnetic resonance imaging

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Optimizing Ethanol Production in Escherichia Coli Using a Hybrid of Particle Swarm Optimization and Artificial Bee Colony 22

Optimizing Ethanol Production in Escherichia Coli Using a Hy...

引用

Proceedings of the 6th International Conference on Advances in Artificial Intelligence

作者： Mohamad Faiz Dzulkalnine Mohd Saberi Mohamad Yee Wen Choon Muhammad Akmal Remli Hany Alashwal Artificial Intelligence and Bioinformatics Research Group Faculty of Computing Universiti Teknologi Malaysia Malaysia Health Data Science Lab Department of Genetics and Genomics College of Medical and Health Sciences United Arab Emirates University UAE and Big Data Analytics Center United Arab Emirates University UAE Institute for Artificial Intelligence and Big Data Universiti Malaysia Kelantan Malaysia and Department of Data Science Universiti Malaysia Kelantan Malaysia Department of Computer Science and Software Engineering College of Information Technology United Arab Emirates University UAE and Big Data Analytics Center United Arab Emirates University UAE

ISBN: (纸本)9781450396943

Metabolic engineering for biomass production using microorganisms’ cell has received considerable attention in recent years. This is due to the biomass products being extensively used in the field of food additives, supplements, pharmaceuticals, and polymer materials. In this paper, ethanol production in Escherichia coli (E. coli) is the desired product. Sugarcane and corn are often used to produce ethanol. However, one of the problems to produce adequate amounts of ethanol is that large areas are needed to plant sugarcane and corn. Furthermore, the amount of time for the process of dry milling and wet milling is high, which are 40 to 50 hours and 24 to 48 hours, respectively. The wet laboratory is also having limitation on the production of ethanol in microorganisms because the amount of the ethanol produced is not satisfying. Hence, a lot of metabolic engineering techniques is introduced to enhance the production of ethanol in E. coli, such as gene knockout strategy, but the production is yet to meet the demand. Therefore, this paper proposes a hybrid algorithm of Particle Swarm Optimization with the Artificial Bee Colony algorithm (PSOABC) to identify the optimal set of gene knockout strategy to improve the ethanol production in E. coli. A list of genes to knockout, production of the desired product, and growth rate are presented in this paper. PSOABC has shown better performance in terms of production, growth rate and accuracy.

关键词： Gene Knockouts Particle Swarm Optimization Artificial Bee Colony Ethanol Flux Balance Analysis

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Short-Time Variational Mode Decomposition

arXiv

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arXiv 2025年

作者： Jia, Hao Cao, Pengfei Liang, Tong Caiafa, Cesar F. Sun, Zhe Kushihashi, Yasuhiro Grau, Antoni Bolea, Yolanda Duan, Feng Solé-Casals, Jordi School of Medicine Nankai University Tianjin China Tianjin Key Laboratory of Interventional Brain-Computer Interface and Intelligent Rehabilitation Tianjin China Universitat Politècnica de Catalunya Barcelona Spain Mechanical Systems Engineering Nippon Institute of Technology Saitama Japan Villa Elisa Argentina Computational Bioengineering Laboratory Faculty of Health Data Science Juntendo University Tokyo Japan Data and Signal Processing Research Group University of Vic-Central University of Catalonia Vic Spain

Variational mode decomposition (VMD) and its extensions like Multivariate VMD (MVMD) decompose signals into ensembles of band-limited modes with narrow central frequencies. These methods utilize Fourier transformations to shift signals between time and frequency domains. However, since Fourier transformations span the entire time-domain signal, they are suboptimal for non-stationary time series. We introduce Short-Time Variational Mode Decomposition (STVMD), an innovative extension of the VMD algorithm that incorporates the Short-Time Fourier transform (STFT) to minimize the impact of local disturbances. STVMD segments signals into short time windows, converting these segments into the frequency domain. It then formulates a variational optimization problem to extract band-limited modes representing the windowed data. The optimization aims to minimize the sum of the bandwidths of these modes across the windowed data, extending the cost functions used in VMD and MVMD. Solutions are derived using the alternating direction method of multipliers, ensuring the extraction of modes with narrow bandwidths. STVMD is divided into dynamic and non-dynamic types, depending on whether the central frequencies vary with time. Our experiments show that non-dynamic STVMD is comparable to VMD with properly sized time windows, while dynamic STVMD better accommodates non-stationary signals, evidenced by reduced mode function errors and tracking of dynamic central frequencies. This effectiveness is validated by steady-state visual-evoked potentials in electroencephalogram signals. Copyright © 2025, The Authors. All rights reserved.

关键词： Cost functions

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Sub-word Based End-to-End Speech Recognition for an Under-Resourced Language: Amharic

Sub-word Based End-to-End Speech Recognition for an Under-Re...

引用

IEEE International Conference on Systems, Man and Cybernetics

作者： Nirayo Hailu Gebreegziabher Andreas Nürnberger Faculty of Computer Science Data and Knowledge Engineering Group Otto-von-Guericke University of Magdeburg Magdeburg Germany

ISBN: (数字)9781728185262

ISBN: (纸本)9781728185279

In this work, we focused on end-to-end speech recognition for less-resourced language, Amharic. The result can be integrated with other tasks such as spoken content retrieval. We explored three models, which consist of Convolutional Neural Networks, Recurrent Neural Networks, and Connectionist Temporal Classification, towards end-to-end speech recognition on less-resourced language. Further, we studied the possibility of having an end-to-end system with 1-best output keeping the network parameters and computational resource minimal. The paper gives attention to finding a more suitable sub-lexical unit for the Amharic end-to-end speech recognition system which can be used as an audio indexing unit. We present the first result comparing grapheme, phoneme, and syllable-based end-to-end speech recognition systems for our target language. The models are evaluated on approximately 52 hours of Amharic speech corpus containing read-speech, audiobooks, and multi-genre radio programs. On the test set, we report a character error rate (CER) of 19.21% and a syllable error rate (SER) of 39.98% for a syllable-based end-to-end model without lexicons and language model integrated.

关键词： Training Error analysis Computational modeling Speech recognition computer architecture data models Task analysis

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