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An Encoding-Decoding Framework Based on CNN for circ RNA-RBP Binding Sites Prediction

Chinese Journal of Electronics 2024年第1期33卷 256-263页

作者： Yajing GUO Xiujuan LEI Yi PAN School of Computer Science Shaanxi Normal University Faculty of Computer Science and Control Engineering Shenzhen Institute of Advanced TechnologyChinese Academy of Sciences Department of Computer Science Georgia State University

Predicting RNA binding protein(RBP) binding sites on circular RNAs(circ RNAs) is a fundamental step to understand their interaction mechanism. Numerous computational methods are developed to solve this problem, but they cannot fully learn the features. Therefore, we propose circ-CNNED, a convolutional neural network(CNN)-based encoding and decoding framework. We first adopt two encoding methods to obtain two original matrices. We preprocess them using CNN before fusion. To capture the feature dependencies, we utilize temporal convolutional network(TCN) and CNN to construct encoding and decoding blocks, respectively. Then we introduce global expectation pooling to learn latent information and enhance the robustness of circ-CNNED. We perform circ-CNNED across 37 datasets to evaluate its effect. The comparison and ablation experiments demonstrate that our method is superior. In addition, motif enrichment analysis on four datasets helps us to explore the reason for performance improvement of circ-CNNED.

关键词： Circular RNAs (circRNAs) RNA binding proteins Convolutional neural network Temporal convolutional network Encoder-decoder network

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Improving agility in projects using machine learning algorithm

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Multimedia Tools and Applications 2024年第38期83卷 85987-86005页

作者： Varun, Janani Karthika, R.A. Department of Computer Science and Engineering Vels Institute of Science Technology and Advanced Studies Chennai India Department of Computer Science and Engineering Saveetha School of Engineering SIMATS Chennai India

All the software products developed will need testing to ensure the quality and accuracy of the product. It makes the life of testers much easier when they can optimize on the effort spent and predict defects for the upcoming modules in the Agile era. The functionality being discussed in this paper is to predict the defects using Random Forest Algorithm. Predictive analytics draws on information from the past to create forecasts about the outcomes of future events. Product team always have the difficulty in delivering the product as per schedule. As we are in the agile era, the requirement keeps changing and team is unsure on upcoming releases. Prediction helps the team to focus on the complex and error prone modules in upcoming releases. The Predictive analytics model designed, can predict defects with an accuracy rate of 88% with the help of historical data. By predicting, testers can focus on the module where there are a greater number of defects predicted by the model and left shift the delivery. © The Author(s), under exclusive licence to Springer science+Business Media, LLC, part of Springer Nature 2024.

关键词： Predictive analytics

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Drug-Target Interactions Prediction Based on Signed Heterogeneous Graph Neural Networks

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Chinese Journal of Electronics 2024年第1期33卷 231-244页

作者： Ming CHEN Yajian JIANG Xiujuan LEI Yi PAN Chunyan JI Wei JIANG College of Information Science and Engineering Hunan Normal University School of Computer Science Shaanxi Normal University Faculty of Computer Science and Control Engineering Shenzhen Institute of Advanced TechnologyChinese Academy of Sciences Computer Science Department BNU-HKBU United International College

Drug-target interactions(DTIs) prediction plays an important role in the process of drug *** computational methods treat it as a binary prediction problem, determining whether there are connections between drugs and targets while ignoring relational types information. Considering the positive or negative effects of DTIs will facilitate the study on comprehensive mechanisms of multiple drugs on a common target, in this work, we model DTIs on signed heterogeneous networks, through categorizing interaction patterns of DTIs and additionally extracting interactions within drug pairs and target protein pairs. We propose signed heterogeneous graph neural networks(SHGNNs), further put forward an end-to-end framework for signed DTIs prediction, called SHGNN-DTI,which not only adapts to signed bipartite networks, but also could naturally incorporate auxiliary information from drug-drug interactions(DDIs) and protein-protein interactions(PPIs). For the framework, we solve the message passing and aggregation problem on signed DTI networks, and consider different training modes on the whole networks consisting of DTIs, DDIs and PPIs. Experiments are conducted on two datasets extracted from Drug Bank and related databases, under different settings of initial inputs, embedding dimensions and training modes. The prediction results show excellent performance in terms of metric indicators, and the feasibility is further verified by the case study with two drugs on breast cancer.

关键词： Drug-target interactions Signed heterogeneous network Link sign prediction Graph neural networks

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Highly-efficient(>70%)and Wide-spectral(400-1700 nm)sub-micron-thick InGaAs photodiodes for future high-resolution image sensors

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Light(science & Applications) 2024年第12期13卷 3224-3235页

作者： Dae-Myeong Geum Jinha Lim Junho Jang Seungyeop Ahn SeongKwang Kim Joonsup Shim Bong Ho Kim Juhyuk Park Woo Jin Baek Jaeyong Jeong SangHyeon Kim School of Electrical Engineering Korea Advanced Institute of Science and Technology(KAIST)Daejeon 34141Republic of Korea Department of Electrical and Computer Engineering Inha UniversityIncheon 22212Republic of Korea

This paper demonstrates the novel approach of sub-micron-thick InGaAs broadband photodetectors(PDs)designed for high-resolution imaging from the visible to short-wavelength infrared(SWIR)*** approaches encounter challenges such as low resolution and crosstalk issues caused by a thick absorption layer(AL).Therefore,we propose a guided-mode resonance(GMR)structure to enhance the quantum efficiency(QE)of the InGaAs PDs in the SWIR region with only sub-micron-thick *** TiOx/Au-based GMR structure compensates for the reduced AL thickness,achieving a remarkably high QE(>70%)from 400 to 1700 nm with only a 0.98μm AL InGaAs PD(defined as 1μm AL PD).This represents a reduction in thickness by at least 2.5 times compared to previous results while maintaining a high ***,the rapid transit time is highly expected to result in decreased electrical *** effectiveness of the GMR structure is evident in its ability to sustain QE even with a reduced AL thickness,simultaneously enhancing the transit *** breakthrough offers a viable solution for high-resolution and low-noise broadband image sensors.

关键词： thick resolution image

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Multi-Scale Time Series Segmentation Network Based on Eddy Current Testing for Detecting Surface Metal Defects

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IEEE/CAA Journal of Automatica Sinica 2025年第3期12卷 528-538页

作者： Xiaorui Li Xiaojuan Ban Haoran Qiao Zhaolin Yuan Hong-Ning Dai Chao Yao Yu Guo Mohammad S.Obaidat George Q.Huang the School of Intelligence Science and Technology University of Science and Technology Beijing the Beijing Advanced Innovation Center for Materials Genome Engineering the Key Laboratory of Intelligent Bionic Unmanned Systems and the Institute of Materials Intelligent Technology Liaoning Academy of Materials IEEE the Department of Computer Science Hong Kong Baptist University the School of Computer and Communication Engineering Key Laboratory of Advanced Materials and Devices for Post-Moore Chips Ministry of Education University of Science and Technology Beijing the Beijing Advanced Innovation Center for Materials Genome Engineering University of Science and Technology Beijing the School of Computer and Communication Engineering University of Science and Technology Beijing the King Abdullah Ⅱ School of Information Technology The University of Jordan the Department of Computational Intelligence the School of Computing SRM University the School of Engineering The Amity University The Hong Kong Polytechnic University

In high-risk industrial environments like nuclear power plants, precise defect identification and localization are essential for maintaining production stability and safety. However, the complexity of such a harsh environment leads to significant variations in the shape and size of the defects. To address this challenge, we propose the multivariate time series segmentation network(MSSN), which adopts a multiscale convolutional network with multi-stage and depth-separable convolutions for efficient feature extraction through variable-length templates. To tackle the classification difficulty caused by structural signal variance, MSSN employs logarithmic normalization to adjust instance distributions. Furthermore, it integrates classification with smoothing loss functions to accurately identify defect segments amid similar structural and defect signal subsequences. Our algorithm evaluated on both the Mackey-Glass dataset and industrial dataset achieves over 95% localization and demonstrates the capture capability on the synthetic dataset. In a nuclear plant's heat transfer tube dataset, it captures 90% of defect instances with75% middle localization F1 score.

关键词： Eddy current testing nondestructive testing semantic segmentation time series analysis

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A Two-Stage Deep Learning Approach for Optimizing Fashion Product Recommendations

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SN computer science 2025年第4期6卷 1-13页

作者： Buradagunta, Suvarna Balakrishna, Sivadi Department of Computer Science and Engineering Vignan’s Foundation for Science Technology and Research Guntur India Department of Advanced Computer Science and Engineering Vignan’s Foundation for Science Technology and Research Guntur India

Online shopping platforms are experiencing rapid growth, necessitating effective product recommendation systems to enhance customer satisfaction by recommending visually similar products. Traditional statistical techniques often result in less accurate recommendations. This study encompasses two primary tasks: Query Product Classification and Product Recommendation Retrieval. The initial job employs a Deep Neural Network, which takes high-level feature representations derived from the Xception and VGG16 for the query image. The features are further analyzed to forecast the category of the product. The second step is retrieving analogous products by calculating cosine similarity, facilitating the identification of visually comparable items within the product database. By leveraging diverse feature representations, the proposed approach improves the precision and relevance of recommendations. Experimental evaluations on fashion product images and Shoe datasets demonstrate significant performance improvements over existing models, achieving accuracies of 91.76%, and 82.23% respectively. These results underscore the capability of the system to provide superior recommendations in online fashion shopping scenarios, emphasizing its effectiveness in improving customer experience. © The Author(s), under exclusive licence to Springer Nature Singapore Pte Ltd. 2025.

关键词： Content-based recommendation Image based recommendation system Pretrained models Recommendation systems VGG-16 Visual product recommendation Xception

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Joint V2V Group Association and Transmission Power Control in Federated Vehicular Networks

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IEEE Internet of Things Journal 2025年第11期12卷 18167-18182页

作者： Liu, Su Guan, Peiyuan Li, Yushuai Li, Tianyi Zolfagharian, Zolaikha Yu, Jiong Huang, Tingwen Xinjiang University School of Computer Science and Technology Urumqi830046 China University of Oslo Department of Informatics Oslo0316 Norway Aalborg University Department of Computer Science Aalborg9220 Denmark University of Tehran School of Electrical and Computer Engineering Iran Shenzhen University of Advanced Technology Faculty of Computer Science and Control Engineering Shenzhen518055 China

With growing awareness of privacy protection, Federated Learning (FL) in vehicular network scenarios effectively addresses privacy concerns, leading to the development of Federated Vehicular Networks (FVN). In FVN, vehicles maintain a global model by transmitting local models and iterative processing, resulting in significant communication overhead. In the Internet of Vehicles (IoV), as the majority of the spectrum resources are allocated to Vehicle-to-Vehicle (V2V) communication, vehicles engaged in FL encounter uplink interference when these resources are reused. This compromises the efficacy of FL vehicle communication. To address this issue, we propose FedCDC, a new Federated learning framework with adaptive weight Clustering with knowledge Distillation and Channel sharing-based resource allocation. First, we implement a communication compression strategy based on clustering and distillation to alleviate transmission load. Then, we develop a resource allocation strategy to maximize the Signal-to-Interference-plus-Noise Ratio (SINR) for both FL vehicles and V2V groups, which investigates two critical components: channel pairing and power coordination. We formulate the optimization issue as a multi-objective optimization problem that is solved offline using the MIDACO solver. Due to the dynamic characteristics of FVN, we employ a Multi-Agent Deep Deterministic Policy Gradient (MADDPG) to enhance efficiency. Finally, extensive experiments demonstrate that our approach significantly reduces data transmission and offers an efficient resource coordination plan, thus improving FL communication efficiency and ensuring the Quality of Service (QoS) for both V2V groups and FL vehicles. © 2014 IEEE.

关键词： Differential privacy

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Electrochemical sensor for dopamine detection based on multiwalled carbon nanotube/molybdenum disulfide quantum dots with machine learning integration and anti-interference capability

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Tungsten 2025年第1期7卷 137-151页

作者： Geethukrishnan Onkar Apte Kiran Kumar Tadi Energy Electrodics and Electrocatalysis (EEE) Lab Department of Chemistry School of Advanced Sciences Vellore Institute of Technology School of Computer Science and Engineering Vellore Institute of Technology

The precise detection and measurement of dopamine（DA）,a crucial neurotransmitter in the human body,plays a significant role in diagnosing,preventing,and treating neurological diseases associated with its levels.A highly sensitive DA electrochemical sensor was constructed by combining molybdenum disulfide quantum dots（MSQDs） with multiwalled carbon nanotubes（MWCNTs）.The MSQDs were synthesized using the shear exfoliation *** sensors consist of MSQDs with Mo-S edge catalytic centers for the DA redox reaction,and MWCNTs amplify the sensor *** linearity of the sensor for the detection of DA was tested in the presence of ascorbic acid(AA,50 μmol·L-1) and uric acid(UA,200 μmol·L-1),and exhibited linearity from 2 to 966 μmol·L-1of DA with 0.097 μA(mol·L-1)-1sensitivity and a low limit of detection of0.6 μmol·L-1（the ratio between signal and noise,S/N=3）.Moreover,the sensitivity and selectivity of the sensor were also studied using *** is no increase in amperometric current after adding the most potentially interfering *** sensor was successfully applied to recover DA in human blood sera ***,machine learning algorithms were operated to aid in the near-precise detection of DA in the heterogeneous mixture containing AA and *** algorithms facilitate the identification and quantification of DA amidst coexisting interferents,including AA,that are commonly present in biological matrices.

关键词： Dopamine MoS_2 Biosensor Multiwalled carbon nanotubes Machine learning Complex mixture

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Cyber Attack Detection Using Deep Multi-agent Reinforcement Learning with Beth Dataset

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SN computer science 2025年第5期6卷 1-16页

作者： Manikandan, A. Rajan, S. Deepa Department of Computer Science and Engineering Vels Institute of Science Technology and Advanced Studies VISTAS Tamil Nadu Chennai India

The Internet of Things (IoT) transforms connectivity, enabling devices to share data seamlessly via the cloud or wireless networks. However, IoT systems remain vulnerable to sophisticated cyberattacks, and traditional detection methods often fail due to inadequate fine-tuning and ineffective feature extraction. This study addresses these challenges by proposing a novel cyberattack detection framework based on deep multi-agent reinforcement learning (MARL). The framework employs the deep deterministic policy gradient (DDPG) algorithm to enhance the adaptive capabilities of multiple agents within an IoT network environment. A newly curated dataset, BETH, is introduced, encompassing diverse cyberattack scenarios specifically designed for training and evaluating MARL-based systems. Through deep reinforcement learning, the framework autonomously learns to detect and mitigate known and emerging threats. To assess the robustness and generalizability of the proposed model, a fivefold cross-validation process was conducted. Experimental results reveal that the proposed approach achieves an exceptional detection accuracy of 99.95%, demonstrating its ability to adapt to dynamic attack patterns while minimizing error rates. The findings highlight the framework’s potential to improve network security significantly, advancing the field of intelligent, autonomous cyber defence for IoT systems. © The Author(s), under exclusive licence to Springer Nature Singapore Pte Ltd. 2025.

关键词： Anomaly detection agents (ADA) BETH dataset Collaboration and communication buffer (CCB) Cyber-attack detection Deep deterministic policy gradient algorithm Internet of Things (IoT) Intrusion detection agents (IDA) Multi-agent reinforcement learning (MARL)

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GSKTM: efficient of query search for spatial keyword in text mining

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International Journal of Information and Communication Technology 2024年第4期25卷 352-379页

作者： Reddy, Ramya Rayacherlu Sambasadasiva Manu, Darshan Naveen Raju, G. Nimbhorkar, Sejal Santosh Rajuk, Venugopal Kuppanna Iyengar, S.S. Patnaik, L.M. Department of Computer Science and Engineering Dayananda Sagar College of Engineering Bangalore India Bangalore University Bengaluru India Department of Computer Science and Engineering Florida International University MiamiFL United States INSA National Institute of Advanced Studies Indian Institute of Science Campus Bangalore India

In today’s world, geo-positioning technologies, location-based services have attracted many researcher’s due to the increasing amount of spatio textual objects in various applications like social networks, geo location services. Each spatial object consists of spatial locations and a set of query terms. In this paper, an efficient group of query search for spatial keyword in text mining is proposed that retrieves both spatial and textual keyword objects to effectively reduce the search space. The clusters and subclusters are constructed based on the calculated range of the objects location and categories in the dataset. Further, categorylist is constructed that identifies the category of interest (CoI) of users query. Experiments are conducted on two real dataset namely Euro and geographic names. It is observed that GSKTM outperforms inverted linear quad-tree (ILQ) with improved response time and provides groupwise top-k results. Copyright © 2024 Inderscience Enterprises Ltd.

关键词： group keyword query search spatial text feature selection

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