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检索条件"机构=Department of Biomedical Engineering and Program in Bioinformatics"
185 条 记 录,以下是111-120 订阅
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Whole-genome and Transcriptome Sequencing of Prostate Cancer Identify New Genetic Alterations Driving Disease Progression
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European urology 2018年 第3期73卷 322-339页
作者: Shancheng Ren Gong-Hong Wei Dongbing Liu Liguo Wang Yong Hou Shida Zhu Lihua Peng Qin Zhang Yanbing Cheng Hong Su Xiuqing Zhou Jibin Zhang Fuqiang Li Hancheng Zheng Zhikun Zhao Changjun Yin Zengquan He Xin Gao Haiyen E Zhau Chia-Yi Chu Jason Boyang Wu Colin Collins Stanislav V Volik Robert Bell Jiaoti Huang Kui Wu Danfeng Xu Dingwei Ye Yongwei Yu Lianhui Zhu Meng Qiao Hang-Mao Lee Yuehong Yang Yasheng Zhu Xiaolei Shi Rui Chen Yang Wang Weidong Xu Yanqiong Cheng Chuanliang Xu Xu Gao Tie Zhou Bo Yang Jianguo Hou Li Liu Zhensheng Zhang Yao Zhu Chao Qin Pengfei Shao Jun Pang Leland W K Chung Jianfeng Xu Chin-Lee Wu Weide Zhong Xun Xu Yingrui Li Xiuqing Zhang Jian Wang Huanming Yang Jun Wang Haojie Huang Yinghao Sun Department of Urology Shanghai Changhai Hospital Second Military Medical University Shanghai China. Biocenter Oulu Faculty of Biochemistry and Molecular Medicine University of Oulu Oulu Finland. BGI-Shenzhen Shenzhen China China National GeneBank-Shenzhen BGI-Shenzhen Shenzhen China. Division of Biomedical Statistics and Informatics Mayo Clinic College of Medicine Rochester MN USA. China National GeneBank-Shenzhen BGI-Shenzhen Shenzhen China State Key Laboratory of Genetic Engineering School of Life Sciences Fudan University Shanghai China. Division of Genomics and Bioinformatics CUHK-BGI Innovation Institute of Trans-Omics The Chinese University of Hong Kong Hong Kong China. BGI Education Center University of Chinese Academy of Sciences Shenzhen China. BGI-Shenzhen Shenzhen China. School of Biological Science and Medical Engineering Southeast University Nanjing China State Key Laboratory of Bioelectronics Southeast University Nanjing China. Department of Urology The First Affiliated Hospital of Nanjing Medical University Nanjing China. Department of Urology The Third Affiliated Hospital of Sun Yat-Sen University Guangzhou China. Uro-Oncology Research Program Department of Medicine Samuel Oschin Comprehensive Cancer Institute Cedars-Sinai Medical Center Los Angeles CA USA. Vancouver Prostate Centre and Department of Urologic Sciences University of British Columbia Vancouver BC Canada. Department of Pathology and Laboratory Medicine David Geffen School of Medicine University of California Los Angeles CA USA. Department of Urology Changzheng Hospital Second Military Medical University Shanghai China. Department of Urology Fudan University Shanghai Cancer Center Shanghai China. Department of Pathology Shanghai Changhai Hospital Second Military Medical University Shanghai China. State Key Laboratory of Genetic Engineering School of Life Sciences Fudan University Shanghai China Program for Personalized Cancer Care NorthShore University HealthS
BACKGROUND:Global disparities in prostate cancer (PCa) incidence highlight the urgent need to identify genomic abnormalities in prostate tumors in different ethnic populations including Asian men.OBJECTIVE:To systemat... 详细信息
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Correction: Single-cell RNA-sequencing identifies anti-cancer immune phenotypes in the early lung metastatic niche during breast cancer
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Clinical & experimental metastasis 2023年 第4期40卷 373页
作者: Sophia M Orbach Michael D Brooks Yining Zhang Scott E Campit Grace G Bushnell Joseph T Decker Ryan J Rebernick Sriram Chandrasekaran Max S Wicha Jacqueline S Jeruss Lonnie D Shea Department of Biomedical Engineering University of Michigan Ann Arbor MI USA. Department of Internal Medicine University of Michigan Ann Arbor MI USA. Department of Chemical Engineering University of Michigan Ann Arbor MI USA. Program in Chemical Biology University of Michigan Ann Arbor MI USA. Medical Science Training Program University of Michigan Ann Arbor MI USA. Department of Computational Medicine and Bioinformatics University of Michigan Ann Arbor MI USA. Rogel Cancer Center University of Michigan Ann Arbor MI USA. Department of Surgery University of Michigan Ann Arbor MI USA. Department of Pathology University of Michigan Ann Arbor MI USA. Department of Biomedical Engineering University of Michigan Ann Arbor MI USA. ldshea@umich.edu. Department of Chemical Engineering University of Michigan Ann Arbor MI USA. ldshea@umich.edu. Rogel Cancer Center University of Michigan Ann Arbor MI USA. ldshea@umich.edu.
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Assessing the Potential of GPT-4 to Annotate Medical Notes Across Different Languages and Countries: A Model Evaluation Study
SSRN
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SSRN 2024年
作者: Saad Menezes, Maria Clara Hoffman, Alexander F. Tan, Amelia L.M. Nalbandyan, Mariné Omenn, Gilbert S. Mazzotti, Diego R. Hernández-Arango, Alejandro Visweswaran, Shyam Venkatesh, Shruthi Mandl, Kenneth D. Bourgeois, Florence T. Lee, James W.K. Makmur, Andrew Hanauer, David A. Semanik, Michael G. Kerivan, Lauren T. Hill, Terra Forero, Julian Restrepo Castro, Carlos Andrés C.R. Vigna, Matteo Ceriana, Piero Abu-El-rub, Noor Avillach, Paul Bellazzi, Riccardo Callaci, Thomas Gutiérrez-Sacristán, Alba Malovini, Alberto Mathew, Jomol P. Morris, Michele Murthy, Venkatesh Parimbelli, Enea Patel, Lav P. Sáez, Carlos Samayamuthu, Malarkodi Jebathilagam Thompson, Jeffrey A. Tibollo, Valentina Xia, Zongqi Kohane, Isaac S. Harvard Medical School Department of Biomedical Informatics 10 Shattuck Street BostonMA02115 United States School of Medicine and Public Health University of Wisconsin-Madison Office of Informatics and Information Technology 750 Highland Ave MadisonWI53705 United States University of Michigan Department of Computational Medicine & Bioinformatics Internal Medicine Human Genetics Environmental Health 100 Washtenaw Avenue Ann ArborMI48109 United States University of Kansas Medical Center Division of Medical Informatics Division of Pulmonary Critical Care and Sleep Medicine Department of Internal Medicine 3901 Rainbow Blvd Kansas CityKS66160 United States University of Antioquia Hospital Alma Máter de Antioquia Department of Internal Medicine Calle 64 N°51 D - 154 Medellín Colombia University of Pittsburgh Department of Biomedical Informatics 5607 Baum Blvd PittsburghPA15206 United States University of Pittsburgh Department of Neurology 3501 5th Avenue PittsburghPA15206 United States Boston Children's Hospital Computational Health Informatics Program 300 Longwood Avenue BostonMA02115 United States Boston Children's Hospital Department of Pediatrics 300 Longwood Avenue BostonMA02115 United States National University Health System Department of Surgery 1E Kent Ridge Rd Singapore119228 Singapore National University Health System Department of Diagnostic Imaging 1E Kent Ridge Rd Singapore119228 Singapore University of Michigan Department of Learning Health Sciences NCRC 100 2800 Plymouth Road Ann ArborMI48109 United States University of Kansas Medical Center Department of Surgery 3901 Rainbow Blvd Kansas CityKS66160 United States Istituti Clinici Scientifici Maugeri IRCCS Respiratory rehabilitation unit Via Maugeri 10 Pavia27100 Italy University of Kansas Medical Center 3901 Rainbow Blvd Kansas CityKS66160 United States University of Pavia Department of Electrical Computer and Biomedical Engineering via Ferrata 5 Pavia2710
Background: Physicians invest hours creating patient notes, which are rich in information but difficult for computers to analyze due to their unstructured format. GPT-4 reshaped our ability to process text, yet it is ... 详细信息
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Development and evaluation of a hospital-wide healthcare-associated surgical site infection detection algorithm
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Journal of Microbiology, Immunology and Infection 2015年 第2期48卷 S43-S43页
作者: Yi-Ju Tseng Bo-Chiang Huang Hui-Chi Lin Ming-Yuan Chen Rung-Ji Shang Wang-Huei Sheng Yee-Chun Chen Feipei Lai Shan-Chwen Chang Children's Hospital Informatics Program Boston Children's Hospital Boston MA USA Graduate Institute of Biomedical Electronics and Bioinformatics National Taiwan University Taiwan Center for Infection Control National Taiwan University Hospital (NTUH) Taiwan Information Systems Office NTUH Taipei Taiwan Department of Internal Medicine NTUH and College of Medicine Taiwan National Institute of Infectious Diseases and Vaccinology National Health Research Institutes Taiwan Department of Computer Science and Information Engineering National Taiwan University Taiwan
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An atlas of dynamic chromatin landscapes in mouse fetal development (vol 583, pg 744, 2020)
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NATURE 2021年 第7842期589卷 E4-E4页
作者: Gorkin, David U. Barozzi, Iros Zhao, Yuan Zhang, Yanxiao Huang, Hui Lee, Ah Young Li, Bin Chiou, Joshua Wildberg, Andre Ding, Bo Zhang, Bo Wang, Mengchi Strattan, J. Seth Davidson, Jean M. Qiu, Yunjiang Afzal, Veena Akiyama, Jennifer A. Plajzer-Frick, Ingrid Novak, Catherine S. Kato, Momoe Garvin, Tyler H. Pham, Quan T. Harrington, Anne N. Mannion, Brandon J. Lee, Elizabeth A. Fukuda-Yuzawa, Yoko He, Yupeng Preissl, Sebastian Chee, Sora Han, Jee Yun Williams, Brian A. Trout, Diane Amrhein, Henry Yang, Hongbo Cherry, J. Michael Wang, Wei Gaulton, Kyle Ecker, Joseph R. Shen, Yin Dickel, Diane E. Visel, Axel Pennacchio, Len A. Ren, Bing Ludwig Institute for Cancer Research La Jolla CA USA Center for Epigenomics University of California San Diego School of Medicine La Jolla CA USA Bioinformatics and Systems Biology Graduate Program University of California San Diego La Jolla CA USA Biomedical Sciences Graduate Program University of California San Diego School of Medicine La Jolla CA USA Department of Cellular and Molecular Medicine University of California San Diego School of Medicine La Jolla CA USA Institute of Genomic Medicine University of California San Diego School of Medicine La Jolla CA USA Moores Cancer Center University of California San Diego School of Medicine La Jolla CA USA Environmental Genomics and Systems Biology Division Lawrence Berkeley National Laboratory Berkeley CA USA Department of Surgery and Cancer Imperial College London London UK US Department of Energy Joint Genome Institute Berkeley CA USA School of Natural Sciences University of California Merced Merced CA USA Comparative Biochemistry Program University of California Berkeley Berkeley CA USA Genomic Analysis Laboratory Salk Institute for Biological Studies La Jolla CA USA Department of Pediatrics University of California San Diego School of Medicine La Jolla CA USA Department of Biochemistry and Molecular Biology Penn State School of Medicine Hershey PA USA Stanford University School of Medicine Department of Genetics Stanford CA USA Howard Hughes Medical Institute Salk Institute for Biological Studies La Jolla CA USA Division of Biology and Biological Engineering California Institute of Technology Pasadena CA USA Institute for Human Genetics and University of California San Francisco San Francisco CA USA Department of Neurology University of California San Francisco San Francisco CA USA
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Transdermal nanolipoplex simultaneously inhibits subcutaneous melanoma growth and suppresses systemically metastatic melanoma by activating host immunity
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Nanomedicine: Nanotechnology, Biology, and Medicine 2023年 47卷 102628-102628页
作者: Chen, Chia-Hung Weng, Tzu-Han Chuang, Cheng-Hsun Huang, Kai-Yao Huang, Sih-Cheng Chen, Pin-Rong Huang, Hsiao-Hsuan Huang, Ling-Ya Shen, Pei-Chun Chuang, Po-Ya Huang, Hsiao-Yen Wu, Yi-Syuan Chang, Hao-Chiun Weng, Shun-Long Liao, Kuang-Wen Department of Medical Research Hsinchu MacKay Memorial Hospital Hsinchu City30071 Taiwan Dependent of Medical Education MacKay Memorial Hospital Taipei10449 Taiwan Institute of Molecular Medicine and Bioengineering National Yang Ming Chiao Tung University Hsinchu City30068 Taiwan Department of Biological Science and Technology National Yang Ming Chiao Tung University Hsinchu City30068 Taiwan Industrial Development Graduate Program of College of Biological Science and Technology National Yang Ming Chiao Tung University Hsinchu City30068 Taiwan Institute of Bioinformatics and Systems Biology National Yang Ming Chiao Tung University Hsinchu City30068 Taiwan Department of Medicine MacKay Medical College New Taipei City25245 Taiwan Department of Obstetrics and Gynecology Hsinchu MacKay Memorial Hospital Hsinchu City30071 Taiwan MacKay Junior College of Medicine Nursing and Management Taipei City11260 Taiwan Drug Development and Value Creation Research Center College of Dental Medicine Kaohsiung Medical University School of Dentistry Graduate Institute of Medicine College of Medicine Center for Cancer Research Kaohsiung Medical University Kaohsiung City80708 Taiwan Center for Intelligent Drug Systems and Smart Bio-devices National Yang Ming Chiao Tung University Hsinchu City30068 Taiwan Department of Biotechnology and Bioindustry Sciences National Cheng Kung University Tainan City70101 Taiwan Ph.D. Degree Program of Biomedical Science and Engineering National Yang Ming Chiao Tung University Hsinchu City30068 Taiwan
Benefit for clinical melanoma treatments, the transdermal neoadjuvant therapy could reduce surgery region and increase immunotherapy efficacy. Using lipoplex (Lipo-PEG-PEI-complex, LPPC) encapsulated doxorubicin (DOX)... 详细信息
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Expression of concern: Microchip-based structure determination of low-molecular weight proteins using cryo-electron microscopy
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Nanoscale 2024年 第9期16卷 4919页
作者: Michael A Casasanta G M Jonaid Liam Kaylor William Y Luqiu Maria J Solares Mariah L Schroen William J Dearnaley Jarad Wilson Madeline J Dukes Deborah F Kelly Department of Biomedical Engineering Pennsylvania State University University Park PA 16802 USA. Debkelly@psu.edu. Materials Research Institute Pennsylvania State University University Park PA 16802 USA. Bioinformatics and Genomics Graduate Program Huck Institutes of the Life Sciences Pennsylvania State University University Park PA 16802 USA. Molecular Cellular and Integrative Biosciences Graduate Program Huck Institutes of the Life Sciences Pennsylvania State University University Park PA 16802 USA. Department of Electrical and Computer Engineering Duke University Durham NC 27708 USA. RayBiotech Life Peachtree Corners GA 30092 USA. Applications Science Protochips Inc. Morrisville NC 27560 USA.
Expression of concern for 'Microchip-based structure determination of low-molecular weight proteins using cryo-electron microscopy' by Michael A. Casasanta , , 2021, , 7285-7293, https://***/10.1039/D1NR00388G.
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Correction: Measurement and models accounting for cell death capture hidden variation in compound response
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Cell death & disease 2020年 第8期11卷 699页
作者: Song Yi Bae Ning Guan Rui Yan Katrina Warner Scott D Taylor Aaron S Meyer Department of Pharmacology University of Minnesota-Twin Cities Minneapolis MN USA. Department of Biological Engineering Massachusetts Institute of Technology Cambridge MA USA. Institute for Computational and Mathematical Engineering Stanford University Stanford CA USA. Biological and Biomedical Sciences Program Harvard University Cambridge MA USA. Department of Bioengineering University of California Los Angeles CA USA. Department of Bioengineering University of California Los Angeles CA USA. a@***. Department of Bioinformatics University of California Los Angeles CA USA. a@***. Jonsson Comprehensive Cancer Center University of California Los Angeles CA USA. a@***. Eli and Edythe Broad Center of Regenerative Medicine and Stem Cell Research University of California Los Angeles CA USA. a@***.
An amendment to this paper has been published and can be accessed via a link at the top of the paper.
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White Paper on Enabling Global Image Data Sharing in the Life Sciences
arXiv
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arXiv 2024年
作者: Bajcsy, Peter Bhattiprolu, Sreenivas Börner, Katy Cimini, Beth A. Collinson, Lucy Ellenberg, Jan Fiolka, Reto Giger, Maryellen Goscinski, Wojtek Hartley, Matthew Hotaling, Nathan Horwitz, Rick Jug, Florian Kreshuk, Anna Lundberg, Emma Mathur, Aastha Narayan, Kedar Onami, Shuichi Plant, Anne L. Prior, Fred Swedlow, Jason Taylor, Adam Keppler, Antje National Institute of Standards and Technology GaithersburgMD20899 United States ZEISS Microscopy Customer Center DublinCA94568 United States Intelligent Systems Engineering Indiana University BloomingtonIN47408 United States Imaging Platform Broad Institute CambridgeMA United States Electron Microscopy Science Technology Platform Francis Crick Institute 1 Midland Road LondonNW1 1AT United Kingdom European Molecular Biology Laboratory Heidelberg Germany Lyda Hill Department of Bioinformatics UT Southwestern Medical Center DallasTX United States Department of Radiology and Committee on Medical Physics University of Chicago ChicagoIL United States National Imaging Facility Brisbane Australia European Molecular Biology Laboratory European Bioinformatics Institute Hinxton Cambridge United Kingdom National Center for Advancing Translational Science National Institutes of Health Rockville United States Allen Institute for Cell Science Seattle United States Fondazione Human Technopole Milan Italy Stanford University California US and SciLifeLab KTH Royal Institute of Technology Stockholm Sweden Center for Molecular Microscopy Center for Cancer Research National Cancer Institute National Institutes of Health BethesdaMD20892 United States Cancer Research Technology Program Frederick National Laboratory for Cancer Research FrederickMD21702 United States RIKEN Center for Biosystems Dynamics Research Kobe Japan Department of Biomedical Informatics Department of Radiology University of Arkansas for Medical Sciences Little RockAR72205 United States Divisions of Computational Biology and Molecular Cell and Developmental Biology University of Dundee United Kingdom Sage Bionetworks SeattleWA United States
Coordinated collaboration is essential to realize the added value of and infrastructure requirements for global image data sharing in the life sciences. In this White Paper, we take a first step at presenting some of ...
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Comparative cellular analysis of motor cortex in human, marmoset and mouse (vol 598, pg 111, 2021)
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NATURE 2022年 第7904期604卷 E8-E8页
作者: Bakken, Trygve E. Jorstad, Nikolas L. Hu, Qiwen Lake, Blue B. Tian, Wei Kalmbach, Brian E. Crow, Megan Hodge, Rebecca D. Krienen, Fenna M. Sorensen, Staci A. Eggermont, Jeroen Yao, Zizhen Aevermann, Brian D. Aldridge, Andrew I. Bartlett, Anna Bertagnolli, Darren Casper, Tamara Castanon, Rosa G. Crichton, Kirsten Daigle, Tanya L. Dalley, Rachel Dee, Nick Dembrow, Nikolai Diep, Dinh Ding, Song-Lin Dong, Weixiu Fang, Rongxin Fischer, Stephan Goldman, Melissa Goldy, Jeff Graybuck, Lucas T. Herb, Brian R. Hou, Xiaomeng Kancherla, Jayaram Kroll, Matthew Lathia, Kanan van Lew, Baldur Li, Yang Eric Liu, Christine S. Liu, Hanqing Lucero, Jacinta D. Mahurkar, Anup McMillen, Delissa Miller, Jeremy A. Moussa, Marmar Nery, Joseph R. Nicovich, Philip R. Niu, Sheng-Yong Orvis, Joshua Osteen, Julia K. Owen, Scott Palmer, Carter R. Pham, Thanh Plongthongkum, Nongluk Poirion, Olivier Reed, Nora M. Rimorin, Christine Rivkin, Angeline Romanow, William J. Sedeno-Cortes, Adriana E. Siletti, Kimberly Somasundaram, Saroja Sulc, Josef Tieu, Michael Torkelson, Amy Tung, Herman Wang, Xinxin Xie, Fangming Yanny, Anna Marie Zhang, Renee Ament, Seth A. Behrens, M. Margarita Bravo, Hector Corrada Chun, Jerold Dobin, Alexander Gillis, Jesse Hertzano, Ronna Hof, Patrick R. Hollt, Thomas Horwitz, Gregory D. Keene, C. Dirk Kharchenko, Peter V. Ko, Andrew L. Lelieveldt, Boudewijn P. Luo, Chongyuan Mukamel, Eran A. Pinto-Duarte, Antonio Preiss, Sebastian Regev, Aviv Ren, Bing Scheuermann, Richard H. Smith, Kimberly Spain, William J. White, Owen R. Koch, Christof Hawrylycz, Michael Tasic, Bosiljka Macosko, Evan Z. McCarroll, Steven A. Ting, Jonathan T. Zeng, Hongkui Zhang, Kun Feng, Guoping Ecker, Joseph R. Linnarsson, Sten Lein, Ed S. Allen Institute for Brain Science Seattle WA USA Department of Physiology and Biophysics University of Washington Seattle WA USA Department of Biomedical Informatics Harvard Medical School Boston MA USA Department of Bioengineering University of California San Diego La Jolla CA USA The Salk Institute for Biological Studies La Jolla CA USA Epilepsy Center of Excellence Department of Veterans Affairs Medical Center Seattle WA USA Stanley Institute for Cognitive Genomics Cold Spring Harbor Laboratory Cold Spring Harbor NY USA Department of Genetics Harvard Medical School Boston MA USA Broad Institute of MIT and Harvard Cambridge MA USA LKEB Department of Radiology Leiden University Medical Center Leiden The Netherlands Pattern Recognition and Bioinformatics group Delft University of Technology Delft The Netherlands J. Craig Venter Institute La Jolla CA USA Department of Pathology University of California San Diego CA USA Division of Vaccine Discovery La Jolla Institute for Immunology La Jolla CA USA Genomic Analysis Laboratory The Salk Institute for Biological Studies La Jolla CA USA Computer Science and Engineering Program University of California San Diego La Jolla CA USA Howard Hughes Medical Institute The Salk Institute for Biological Studies La Jolla CA USA Bioinformatics and Systems Biology Graduate Program University of California San Diego La Jolla CA USA Institute for Genomes Sciences University of Maryland School of Medicine Baltimore MD USA Center for Epigenomics Department of Cellular and Molecular Medicine University of California San Diego La Jolla CA USA Ludwig Institute for Cancer Research La Jolla CA USA Department of Computer Science University of Maryland College Park College Park MD USA Sanford Burnham Prebys Medical Discovery Institute La Jolla CA USA Biomedical Sciences Program School of Medicine University of California San Diego La Jolla CA USA University of Connecticut Storrs CT USA Department
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