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检索条件"机构=Department of Biomedical Engineering and Program in Bioinformatics"
187 条 记 录,以下是71-80 订阅
A structural haplotype in the 17q21.31 MAPT region is associated with increased risk for chronic traumatic encephalopathy endophenotypes
Cell Reports Medicine
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Cell Reports Medicine 2025年 第5期6卷 102084-102084页
作者: Han, Xudong Zhang, Yichi Petrosky, Jillian N. Bald, Sarah Sherva, Richard M. Labadorf, Adam Cherry, Jonathan D. Chung, Jaeyoon Farrell, Kurt Abdolmohammadi, Bobak Durape, Shruti Martin, Brett M. Palmisano, Joseph N. Farrell, John J. Alvarez, Victor E. Huber, Bertrand R. Dwyer, Brigid Daneshvar, Daniel H. Jun, Gyungah R. Lunetta, Kathryn L. Goldstein, Lee E. Katz, Douglas I. Cantu, Robert C. Shenton, Martha E. Cummings, Jeffrey L. Reiman, Eric M. Stern, Robert A. Alosco, Michael L. Tripodis, Yorghos Farrer, Lindsay A. Stein, Thor D. Crary, John F. McKee, Ann C. Mez, Jesse Bioinformatics Graduate Program Boston University Boston MA United States Section of Biomedical Genetics Department of Medicine Boston University Chobanian & Avedisian School of Medicine Boston MA United States Department of Neurology Boston University Chobanian & Avedisian School of Medicine Boston MA United States Boston University Alzheimer's Disease Research Center Boston University Chobanian & Avedisian School of Medicine Boston MA United States Boston VA Healthcare System Boston MA United States Boston University Chronic Traumatic Encephalopathy Center Boston University Boston MA United States Department of Pathology and Laboratory Medicine Boston University Chobanian & Avedisian School of Medicine Boston MA United States Departments of Pathology Neuroscience and Artificial Intelligence & Human Health Neuropathology Brain Bank & Research CoRE Friedman Brain Institute Ronald M. Loeb Center for Alzheimer's Disease Icahn School of Medicine at Mount Sinai New York NY United States Biostatistics and Epidemiology Data Analytics Center Boston University School of Public Health Boston MA United States Bedford VA Healthcare System Bedford MA United States Braintree Rehabilitation Hospital Braintree MA United States Department of Physical Medicine and Rehabilitation Harvard Medical School Boston MA United States Department of Rehabilitation and Human Performance Brain Injury Research Center Icahn School of Medicine at Mount Sinai New York NY United States Department of Neurology Icahn School of Medicine at Mount Sinai New York NY United States Department of Biostatistics Boston University School of Public Health Boston MA United States Department of Ophthalmology Boston University Chobanian & Avedisian School of Medicine Boston MA United States Departments of Biomedical Electrical & Computer Engineering Boston University College of Engineering Boston MA United States Departments of Radiology and Psychiatry Boston University Chobanian & Avedisia
Chronic traumatic encephalopathy (CTE) is a neurodegenerative tauopathy associated with repetitive head impact (RHI) exposure. Genetic variation in the 17q21.31 region, containing microtubule-associated protein tau (M... 详细信息
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MetaMOPE: a web service for mobile phase determination and fast chromatography peaks evaluation for metabolomics
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bioinformatics Advances 2023年 第1期3卷
作者: Tsai, Dong-Ming Chang, Ching-Yao Lin, Shih-Ming Kuo, Tien-Chueh Wang, San-Yuan Chen, Guan-Yuan Kuo, Ching-Hua Tseng, Yufeng Jane Graduate Institute of Biomedical Electronics and Bioinformatics National Taiwan University Taipei 106216 Taiwan The Metabolomics Core Laboratory Centers of Genomic and Precision Medicine National Taiwan University Taipei 100225 Taiwan Department of Computer Science and Information Engineering National Taiwan University Taipei 106216 Taiwan Master Program for Clinical Pharmacogenomics and Pharmacoproteomics School of Pharmacy Taipei Medical University Taipei 110301 Taiwan Forensic Medicine College of Medicine National Taiwan University Taipei 100225 Taiwan School of Pharmacy College of Medicine National Taiwan University Taipei 100225 Taiwan
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PCGF6 regulates stem cell pluripotency as a transcription activator via super-enhancer dependent chromatin interactions
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Protein & Cell 2019年 第10期10卷 709-725页
作者: Xiaona Huang Chao Wei Fenjie Li Lumeng Jia Pengguihang Zeng Jiahe Li Jin Tan Tuanfeng Sun Shaoshuai Jiang Jia Wang Xiuxiao Tang Bin Liu Limin Rong Cheng Li Junjun Ding RNA Biomedical Institute Sun Yat-Sen Memorial HospitalZhongshan School of MedicineSun Yat-Sen UniversityGuangzhou 510080China Center for Stem Cell Biology and Tissue Engineering Key Laboratory for Stem Cells and Tissue EngineeringMinistry of EducationSun Yat-Sen UniversityGuangzhou 510080China Department of Cell Biology Zhongshan School of MedicineSun Yat-sen UniversityGuangzhou 510080China Program in Stem Cell and Regenerative Medicine The Third Affiliated Hospital of Sun Yat-sen UniversityZhongshan School of MedicineSun Yat-Sen UniversityGuangzhouChina Center for Bioinformatics School of Life SciencesPeking UniversityBeijing 100871China Department of Spine Surgery The Third Affiliated Hospital of Sun Yat-sen UniversityGuangzhou 510630China Department of Histology and Embryology School of Basic Medical SciencesGuangzhou Medical UniversityGuangzhou 511436China
Polycomb group(PcG)ring finger protein 6(PCGF6),though known as a member of the transcription-re-pressing complexes,PcG,also has activation function in regulating pluripotency gene ***,the mechanism underlying the act... 详细信息
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Predictive biophysical neural network modeling of a compendium of in vivo transcription factor DNA binding profiles for Escherichia coli
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Nature Communications 2025年 第1期16卷 1-16页
作者: Lally, Patrick Gómez-Romero, Laura Tierrafría, Víctor H. Aquino, Patricia Rioualen, Claire Zhang, Xiaoman Kim, Sunyoung Baniulyte, Gabriele Plitnick, Jonathan Smith, Carol Babu, Mohan Collado-Vides, Julio Wade, Joseph T. Galagan, James E. Department of Biomedical Engineering Boston University 44 Cummington Mall Boston MA United States Instituto Nacional de Medicina Genómica Periférico Sur 4809 Arenal Tepepan Ciudad de México México Mexico Escuela de Medicina y Ciencias de la Salud Tecnológico de Monterrey Ciudad de México México Mexico Centro de Ciencias Genómicas Universidad Nacional Autónoma de México Avenida Universidad s/n Cuernavaca Morelos Mexico Department of Biochemistry University of Regina Regina Saskatchewan SK Canada Wadsworth Center New York State Department of Health Albany NY United States Centre for Genomic Regulation (CRG) The Barcelona Institute of Science and Technology Dr. Aiguader 88 Barcelona 08003 Universitat Pompeu Fabra (UPF) Barcelona Spain Department of Biomedical Sciences University at Albany SUNY Albany NY United States Bioinformatics Program Boston University 24 Cummington Mall Boston MA United States
The DNA binding of most Escherichia coli Transcription Factors (TFs) has not been comprehensively mapped, and few have models that can quantitatively predict binding affinity. We report the global mapping of in vivo D...
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Author Correction: A comprehensive human embryo reference tool using single-cell RNA-sequencing data
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Nature methods 2025年 第3期22卷 636页
作者: Cheng Zhao Alvaro Plaza Reyes John Paul Schell Jere Weltner Nicolás M Ortega Yi Zheng Åsa K Björklund Laura Baqué-Vidal Joonas Sokka Ras Trokovic Brian Cox Janet Rossant Jianping Fu Sophie Petropoulos Fredrik Lanner Department of Clinical Science Intervention and Technology Karolinska Institutet and Division of Obstetrics and Gynecology Karolinska Universitetssjukhuset Stockholm Sweden. Department of Integrative Pathophysiology and Therapy Andalusian Molecular Biology and Regenerative Medicine Centre (CABIMER) Seville Spain. Stem Cells and Metabolism Research Program University of Helsinki Helsinki Finland. Folkhälsan Research Center Helsinki Finland. Department of Mechanical Engineering University of Michigan Ann Arbor MI USA. Department of Biomedical and Chemical Engineering Syracuse University Syracuse NY USA. Department of Cell and Molecular Biology National Bioinformatics Infrastructure Sweden Science for Life Laboratory Uppsala University Uppsala Sweden. Department of Physiology Faculty of Medicine University of Toronto Toronto Ontario Canada. Program in Developmental and Stem Cell Biology Hospital for Sick Children Toronto Ontario Canada. Department of Cell and Developmental Biology University of Michigan Medical School Ann Arbor MI USA. Department of Biomedical Engineering University of Michigan Ann Arbor MI USA. Department of Clinical Science Intervention and Technology Karolinska Institutet and Division of Obstetrics and Gynecology Karolinska Universitetssjukhuset Stockholm Sweden. sophie.petropoulos@ki.se. Département de Médecine Université de Montréal Montreal Quebec Canada. sophie.petropoulos@ki.se. Centre de Recherche du Centre Hospitalier de l'Université de Montréal Axe Immunopathologie Montreal Quebec Canada. sophie.petropoulos@ki.se. Department of Clinical Science Intervention and Technology Karolinska Institutet and Division of Obstetrics and Gynecology Karolinska Universitetssjukhuset Stockholm Sweden. fredrik.lanner@ki.se. Ming Wai Lau Center for Reparative Medicine Stockholm Node Karolinska Institutet Stockholm Sweden. fredrik.lanner@ki.se.
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A retinoic acid:YAP1 signaling axis controls atrial lineage commitment
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Cell Reports 2025年 第5期44卷 115687页
作者: Abraham, Elizabeth Kostina, Aleksandra Volmert, Brett Roule, Thomas Huang, Ling Yu, Jingting Williams, April E. Megill, Emily Douglas, Aidan Pericak, Olivia M. Morris, Alex Stronati, Eleonora Larrinaga-Zamanillo, Arantza Fueyo, Raquel Zubillaga, Mikel Andrake, Mark D. Akizu, Naiara Aguirre, Aitor Estaras, Conchi Department of Cardiovascular Sciences Aging + Cardiovascular Discovery Center Lewis Katz School of Medicine Temple University Philadelphia 19140 PA United States Institute for Quantitative Health Science and Engineering Division of Developmental and Stem Cell Biology Michigan State University East Lansing 48824 MI United States Department of Biomedical Engineering College of Engineering Michigan State University East Lansing 48824 MI United States Raymond G. Perelman Center for Cellular and Molecular Therapeutics The Children's Hospital of Philadelphia Philadelphia 19104 PA United States Integrative Genomics and Bioinformatics Core Salk Institute for Biological Studies La Jolla 92037 CA United States Department of Child and Adolescence Psychiatry The Children's Hospital of Philadelphia Philadelphia 19104 PA United States Department of Chemical and Systems Biology Stanford University School of Medicine Stanford 94305 CA United States Cancer Epigenetics Institute Fox Chase Cancer Center Philadelphia 19111 PA United States Molecular Modeling Facility Program in Cancer Signaling and Microenvironment Fox Chase Cancer Center Philadelphia 19111 PA United States
In cardiac progenitor cells (CPCs), retinoic acid (RA) signaling induces atrial lineage gene expression and acquisition of an atrial cell fate. To achieve this, RA coordinates a complex regulatory network of downstrea... 详细信息
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scTenifoldXct: A semi-supervised method for predicting cell-cell interactions and mapping cellular communication graphs
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Cell systems 2023年 第4期14卷 302-311.e4页
作者: Yongjian Yang Guanxun Li Yan Zhong Qian Xu Yu-Te Lin Cristhian Roman-Vicharra Robert S Chapkin James J Cai Department of Electrical and Computer Engineering Texas A&M University College Station TX 77843 USA. Department of Statistics Texas A&M University College Station TX 77843 USA. Key Laboratory of Advanced Theory and Application in Statistics and Data Science-MOE School of Statistics East China Normal University 3663 North Zhongshan Road Shanghai 200062 China. Department of Veterinary Integrative Biosciences Texas A&M University College Station TX 77843 USA. Graduate Institute of Biomedical Electronics and Bioinformatics National Taiwan University Taipei Taiwan. Department of Nutrition and the Program in Integrative Nutrition & Complex Diseases Texas A&M University College Station TX 77843 USA. Electronic address: r-chapkin@tamu.edu. Department of Electrical and Computer Engineering Texas A&M University College Station TX 77843 USA Department of Veterinary Integrative Biosciences Texas A&M University College Station TX 77843 USA Interdisciplinary Program of Genetics Texas A&M University College Station TX 77843 USA. Electronic address: jcai@tamu.edu.
We present scTenifoldXct, a semi-supervised computational tool for detecting ligand-receptor (LR)-mediated cell-cell interactions and mapping cellular communication graphs. Our method is based on manifold alignment, u... 详细信息
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Comparative cellular analysis of motor cortex in human, marmoset and mouse (vol 598, pg 111, 2021)
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NATURE 2022年 第7904期604卷 E8-E8页
作者: Bakken, Trygve E. Jorstad, Nikolas L. Hu, Qiwen Lake, Blue B. Tian, Wei Kalmbach, Brian E. Crow, Megan Hodge, Rebecca D. Krienen, Fenna M. Sorensen, Staci A. Eggermont, Jeroen Yao, Zizhen Aevermann, Brian D. Aldridge, Andrew I. Bartlett, Anna Bertagnolli, Darren Casper, Tamara Castanon, Rosa G. Crichton, Kirsten Daigle, Tanya L. Dalley, Rachel Dee, Nick Dembrow, Nikolai Diep, Dinh Ding, Song-Lin Dong, Weixiu Fang, Rongxin Fischer, Stephan Goldman, Melissa Goldy, Jeff Graybuck, Lucas T. Herb, Brian R. Hou, Xiaomeng Kancherla, Jayaram Kroll, Matthew Lathia, Kanan van Lew, Baldur Li, Yang Eric Liu, Christine S. Liu, Hanqing Lucero, Jacinta D. Mahurkar, Anup McMillen, Delissa Miller, Jeremy A. Moussa, Marmar Nery, Joseph R. Nicovich, Philip R. Niu, Sheng-Yong Orvis, Joshua Osteen, Julia K. Owen, Scott Palmer, Carter R. Pham, Thanh Plongthongkum, Nongluk Poirion, Olivier Reed, Nora M. Rimorin, Christine Rivkin, Angeline Romanow, William J. Sedeno-Cortes, Adriana E. Siletti, Kimberly Somasundaram, Saroja Sulc, Josef Tieu, Michael Torkelson, Amy Tung, Herman Wang, Xinxin Xie, Fangming Yanny, Anna Marie Zhang, Renee Ament, Seth A. Behrens, M. Margarita Bravo, Hector Corrada Chun, Jerold Dobin, Alexander Gillis, Jesse Hertzano, Ronna Hof, Patrick R. Hollt, Thomas Horwitz, Gregory D. Keene, C. Dirk Kharchenko, Peter V. Ko, Andrew L. Lelieveldt, Boudewijn P. Luo, Chongyuan Mukamel, Eran A. Pinto-Duarte, Antonio Preiss, Sebastian Regev, Aviv Ren, Bing Scheuermann, Richard H. Smith, Kimberly Spain, William J. White, Owen R. Koch, Christof Hawrylycz, Michael Tasic, Bosiljka Macosko, Evan Z. McCarroll, Steven A. Ting, Jonathan T. Zeng, Hongkui Zhang, Kun Feng, Guoping Ecker, Joseph R. Linnarsson, Sten Lein, Ed S. Allen Institute for Brain Science Seattle WA USA Department of Physiology and Biophysics University of Washington Seattle WA USA Department of Biomedical Informatics Harvard Medical School Boston MA USA Department of Bioengineering University of California San Diego La Jolla CA USA The Salk Institute for Biological Studies La Jolla CA USA Epilepsy Center of Excellence Department of Veterans Affairs Medical Center Seattle WA USA Stanley Institute for Cognitive Genomics Cold Spring Harbor Laboratory Cold Spring Harbor NY USA Department of Genetics Harvard Medical School Boston MA USA Broad Institute of MIT and Harvard Cambridge MA USA LKEB Department of Radiology Leiden University Medical Center Leiden The Netherlands Pattern Recognition and Bioinformatics group Delft University of Technology Delft The Netherlands J. Craig Venter Institute La Jolla CA USA Department of Pathology University of California San Diego CA USA Division of Vaccine Discovery La Jolla Institute for Immunology La Jolla CA USA Genomic Analysis Laboratory The Salk Institute for Biological Studies La Jolla CA USA Computer Science and Engineering Program University of California San Diego La Jolla CA USA Howard Hughes Medical Institute The Salk Institute for Biological Studies La Jolla CA USA Bioinformatics and Systems Biology Graduate Program University of California San Diego La Jolla CA USA Institute for Genomes Sciences University of Maryland School of Medicine Baltimore MD USA Center for Epigenomics Department of Cellular and Molecular Medicine University of California San Diego La Jolla CA USA Ludwig Institute for Cancer Research La Jolla CA USA Department of Computer Science University of Maryland College Park College Park MD USA Sanford Burnham Prebys Medical Discovery Institute La Jolla CA USA Biomedical Sciences Program School of Medicine University of California San Diego La Jolla CA USA University of Connecticut Storrs CT USA Department
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Microchip-Based Structure Determination of Small Proteins Using Cryo-EM
SSRN
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SSRN 2020年
作者: Casasanta, Michael A. Jonaid, G.M. Kaylor, Liam Luqiu, William Y. Solares, Maria J. Schroen, Mariah L. Dearnaley, William J. Wilson, Jarad Dukes, Madeline J. Kelly, Deborah F. Department of Biomedical Engineering Pennsylvania State University University ParkPA16802 United States Materials Research Institute Pennsylvania State University University ParkPA16802 United States Bioinformatics and Genomics Graduate Program Huck Institutes of the Life Sciences Pennsylvania State University University ParkPA16802 United States Molecular Cellular and Integrative Biosciences Graduate Program Huck Institutes of the Life Sciences Pennsylvania State University University ParkPA16802 United States Department of Electrical and Computer Engineering Duke University DurhamNC27708 United States RayBiotech Life Peachtree CornersGA30092 United States Applications Science Protochips Inc MorrisvilleNC27560 United States
Interest in cryo-Electron Microscopy (EM) imaging has skyrocketed in recent years due to its pristine views of macromolecules and materials. As advances in instrumentation and computing algorithms spurred this progres... 详细信息
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Modern views of ancient metabolic networks
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Current Opinion in Systems Biology 2018年 8卷 117-124页
作者: Goldford, Joshua E. Segrè, Daniel Bioinformatics Program and Biological Design Center Boston University Boston 02215 MA United States Department of Biology Boston University Boston 02215 MA United States Department of Biomedical Engineering Boston University Boston 02215 MA United States Department of Physics Boston University Boston 02215 MA United States
Metabolism is a molecular, cellular, ecological and planetary phenomenon, whose fundamental principles are likely at the heart of what makes living matter different from inanimate one. Systems biology approaches devel... 详细信息
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