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2010 AAAI Fall Symposium

作者： Davenport, Mark A. Hegde, Chinmay Duarte, Marco F. Baraniuk, Richard G. Department of Statistics Stanford University Stanford CA 94305 United States Department of Electrical and Computer Engineering Rice University Houston TX 77005 United States Program in Applied and Computational Mathematics Princeton University Princeton NJ 08544 United States

ISBN: (纸本)9781577354888

The emergence of low-cost sensing architectures for diverse modalities has made it possible to deploy sensor networks that acquire large amounts of very high-dimensional data. To cope with such a data deluge, manifold models are often developed that provide a powerful theoretical and algorithmic framework for capturing the intrinsic structure of data governed by a low-dimensional set of ***, these models do not typically take into account dependencies among multiple sensors. We thus propose a new joint manifold framework for data ensembles that exploits such dependencies. We show that joint manifold structure can lead to improved performance for manifold learning. Additionally, we leverage recent results concerning random projections of manifolds to formulate a universal, network-scalable dimensionality reduction scheme that efficiently fuses the data from all sensors. Copyright © 2010, Association for the Advancement of Artificial Intelligence. All rights reserved.

关键词： Sensor networks

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Influence of nonequilibrium lipid transport, membrane compartmentalization, and membrane proteins on the lateral organization of the plasma membrane

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Physical Review E 2010年第1期81卷 011908-011908页

作者： Jun Fan Maria Sammalkorpi Mikko Haataja Department of Mechanical and Aerospace Engineering Princeton Institute for the Science and Technology of Materials (PRISM) and Program in Applied and Computational Mathematics (PACM) Princeton University Princeton New Jersey 08544 USA

Compositional lipid domains (lipid rafts) in plasma membranes are believed to be important components of many cellular processes. The mechanisms by which cells regulate the sizes, lifetimes, and spatial localization of these domains are rather poorly understood at the moment. We propose a robust mechanism for the formation of finite-sized lipid raft domains in plasma membranes, the competition between phase separation in an immiscible lipid system and active cellular lipid transport processes naturally leads to the formation of such domains. Simulations of a continuum model reveal that the raft size distribution is broad and the average raft size is strongly dependent on the rates of cellular and interlayer lipid transport processes. We demonstrate that spatiotemporal variations in the recycling may enable the cell to localize larger raft aggregates at specific parts along the membrane. Moreover, we show that membrane compartmentalization may further facilitate spatial localization of the raft domains. Finally, we demonstrate that local interactions with immobile membrane proteins can spatially localize the rafts and lead to further clustering.

关键词： Cell membranes

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Lipid Microdomains: Structural Correlations, Fluctuations, and Formation Mechanisms

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Physical Review Letters 2010年第11期104卷 118101-118101页

作者： Jun Fan Maria Sammalkorpi Mikko Haataja Department of Mechanical and Aerospace Engineering Princeton Institute for the Science and Technology of Materials (PRISM) Program in Applied and Computational Mathematics (PACM) Princeton University Princeton New Jersey 08544 USA

Compositional lipid microdomains (“lipid rafts”) in mammalian plasma membranes are believed to facilitate many important cellular processes. While several physically distinct scenarios predicting the presence of finite-sized microdomains in vivo have been proposed in the past, direct experimental verification or falsification of model predictions has remained elusive. Herein, we demonstrate that the combination of the spatial correlation and temporal fluctuation spectra of the lipid domains can be employed to unambiguously differentiate between the existing theoretical scenarios. Furthermore, the differentiation of the raft formation mechanisms using this methodology can be achieved by collecting data at physiologically relevant conditions without the need to tune control parameters.

关键词： Cell membranes

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TEXAS HOLD'EM ALGORITHMS FOR DISTRIBUTED COMPRESSIVE SENSING

TEXAS HOLD'EM ALGORITHMS FOR DISTRIBUTED COMPRESSIVE SENSING

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IEEE International Conference on Acoustics, Speech, and Signal Processing

作者： Stephen R. Schnelle Jason N. Laska Chinmay Hegde Marco F. Duarte Mark A. Davenport Richard G. Baraniuk Department of Electrical and Computer Engineering Rice University Houston TX 77005 Program in Applied and Computational Mathematics Princeton University Princeton NJ 08544

ISBN: (纸本)9781424442959

This paper develops a new class of algorithms for signal recovery in the distributed compressive sensing (DCS) framework. DCS exploits both intra-signal and inter-signal correlations through the concept of joint sparsity to further reduce the number of measurements required for recovery. DCS is well-suited for sensor network applications due to its universality, computational asymmetry, tolerance to quantization and noise, and robustness to measurement loss. In this paper we propose recovery algorithms for the sparse common and innovation joint sparsity model. Our approach leads to a class of efficient algorithms, the Texas Hold 'Em algorithms, which are scalable both in terms of communication bandwidth and computational complexity.

关键词： Signal reconstruction multisensor systems data compression Multisensor systems Signal reconstruction Data compression New classes algorithms Texas Signal restoration Quantization Scalability

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KRONECKER PRODUCT MATRICES FOR COMPRESSIVE SENSING

KRONECKER PRODUCT MATRICES FOR COMPRESSIVE SENSING

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IEEE International Conference on Acoustics, Speech, and Signal Processing

作者： Marco F. Duarte Richard G. Baraniuk Program in Applied and Computational Mathematics Princeton University Princeton NJ 08544 Department of Electrical and Computer Engineering Rice University Houston TX 77005

ISBN: (纸本)9781424442959

Compressive sensing (CS) is an emerging approach for acquisition of signals having a sparse or compressible representation in some basis. While CS literature has mostly focused on problems involving 1-D and 2-D signals, many important applications involve signals that are multidimensional. We propose the use of Kronecker product matrices in CS for two purposes. First, we can use such matrices as sparsifying bases that jointly model the different types of structure present in the signal. Second, the measurement matrices used in distributed measurement settings can be easily expressed as Kronecker products. This new formulation enables the derivation of analytical bounds for sparse approximation and CS recovery of multidimensional signals.

关键词： Data compression multidimensional signal processing signal reconstruction

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Robust algorithm to generate a diverse class of dense disordered and ordered sphere packings via linear programming

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Physical Review E 2010年第6期82卷 061302-061302页

作者： S. Torquato Y. Jiao Department of Chemistry Department of Physics Princeton Center for Theoretical Science Princeton Institute for the Science and Technology of Materials Program in Applied and Computational Mathematics Princeton University Princeton New Jersey 08544 USA Department of Mechanical and Aerospace Engineering Princeton University Princeton New Jersey 08544 USA

We have formulated the problem of generating dense packings of nonoverlapping, nontiling nonspherical particles within an adaptive fundamental cell subject to periodic boundary conditions as an optimization problem called the adaptive-shrinking cell (ASC) formulation [S. Torquato and Y. Jiao, Phys. Rev. E 80, 041104 (2009)]. Because the objective function and impenetrability constraints can be exactly linearized for sphere packings with a size distribution in d-dimensional Euclidean space Rd, it is most suitable and natural to solve the corresponding ASC optimization problem using sequential-linear-programming (SLP) techniques. We implement an SLP solution to produce robustly a wide spectrum of jammed sphere packings in Rd for d=2, 3, 4, 5, and 6 with a diversity of disorder and densities up to the respective maximal densities. A novel feature of this deterministic algorithm is that it can produce a broad range of inherent structures (locally maximally dense and mechanically stable packings), besides the usual disordered ones (such as the maximally random jammed state), with very small computational cost compared to that of the best known packing algorithms by tuning the radius of the influence sphere. For example, in three dimensions, we show that it can produce with high probability a variety of strictly jammed packings with a packing density anywhere in the wide range [0.6, 0.7408…], where π/18=0.7408… corresponds to the density of the densest packing. We also apply the algorithm to generate various disordered packings as well as the maximally dense packings for d=2, 4, 5, and 6. Our jammed sphere packings are characterized and compared to the corresponding packings generated by the well-known Lubachevsky-Stillinger (LS) molecular-dynamics packing algorithm. Compared to the LS procedure, our SLP protocol is able to ensure that the final packings are truly jammed, produces disordered jammed packings with anomalously low densities, and is appreciably more robust an

关键词： Packing

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Systematic Reduction of Combustion Reaction Mechanisms of common Hydrocarbons and Oxygenated Fuels

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AIP Conference Proceedings 2010年第1期1281卷 558-561页

作者： A. L. De Bortoli F. A. Vaz G. S. Lorenzzetti I. Martins aUFRGS‐IM/DMPA‐Department of Pure and Applied Mathematics Bento Gonçalves 9500 P.O. Box 15080 Porto Alegre Brazil bUFRGS‐PPGMAp—Graduate Program in Applied Mathematics Bento Gonçalves 9500 91509‐900 Porto Alegre‐RS Brazil cUFRGS‐PPGEQ‐Graduate Program in Chemical Engineering Engenheiro Luiz Englert s/no 90040‐040 Porto Alegre‐RS Brazil dUFRGS‐PPGEQ‐Graduate Program in Chemical Engineering Engenheiro Luiz Englert s/no 90040‐040 Porto Alegre‐RS Brazil

The aim of this work is the development of a numerical technique for the reduction of reaction mechanisms of common hydrocarbon and oxygenated fuels, such as methane, ethylene, propane, methanol and ethanol, using steady‐state and partial equilibrium assumptions. Numerical tests are carried to establish the basic chain for each fuel as well as to determine the amount of small products of combustion, whose concentration depends on the turbulent mixing and needs to be controlled due to environmental restrictions. The results are in agreement with data in the literature.

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Phase behavior of colloidal superballs: Shape interpolation from spheres to cubes

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Physical Review E 2010年第6期81卷 061105-061105页

作者： Robert D. Batten Frank H. Stillinger Salvatore Torquato Department of Chemical Engineering Princeton University Princeton New Jersey 08544 USA Department of Chemistry Princeton University Princeton New Jersey 08544 USA Department of Physics Princeton University Princeton New Jersey 08544 USA Princeton Center for Theoretical Science Princeton University Princeton New Jersey 08544 USA Princeton Institute for the Science and Technology of Materials Princeton University Princeton New Jersey 08544 USA Program in Applied and Computational Mathematics Princeton University Princeton New Jersey 08544 USA School of Natural Sciences Institute for Advanced Study Princeton New Jersey 08544 USA

The phase behavior of hard superballs is examined using molecular dynamics within a deformable periodic simulation box. A superball’s interior is defined by the inequality |x|2q+|y|2q+|z|2q≤1, which provides a versatile family of convex particles (q≥0.5) with cubelike and octahedronlike shapes as well as concave particles (q<0.5) with octahedronlike shapes. Here, we consider the convex case with a deformation parameter q between the sphere point (q=1) and the cube (q=∞). We find that the asphericity plays a significant role in the extent of cubatic ordering of both the liquid and crystal phases. Calculation of the first few virial coefficients shows that superballs that are visually similar to cubes can have low-density equations of state closer to spheres than to cubes. Dense liquids of superballs display cubatic orientational order that extends over several particle lengths only for large q. Along the ordered, high-density equation of state, superballs with 1

关键词： Spheres

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Exact constructions of a family of dense periodic packings of tetrahedra

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Physical Review E 2010年第4期81卷 041310-041310页

作者： S. Torquato Y. Jiao Department of Chemistry Princeton University Princeton New Jersey 08544 USA Department of Physics Princeton University Princeton New Jersey 08544 USA Princeton Center for Theoretical Science Princeton University Princeton New Jersey 08544 USA Program in Applied and Computational Mathematics Princeton University Princeton New Jersey 08544 USA School of Natural Sciences Institute for Advanced Study Princeton New Jersey 08540 USA Department of Mechanical and Aerospace Engineering Princeton University Princeton New Jersey 08544 USA

The determination of the densest packings of regular tetrahedra (one of the five Platonic solids) is attracting great attention as evidenced by the rapid pace at which packing records are being broken and the fascinating packing structures that have emerged. Here we provide the most general analytical formulation to date to construct dense periodic packings of tetrahedra with four particles per fundamental cell. This analysis results in six-parameter family of dense tetrahedron packings that includes as special cases recently discovered “dimer” packings of tetrahedra, including the densest known packings with density ϕ=40004671=0.856347…. This study strongly suggests that the latter set of packings are the densest among all packings with a four-particle basis. Whether they are the densest packings of tetrahedra among all packings is an open question, but we offer remarks about this issue. Moreover, we describe a procedure that provides estimates of upper bounds on the maximal density of tetrahedron packings, which could aid in assessing the packing efficiency of candidate dense packings.

关键词： constructions family tetrahedra tetrahedrons family Dense Platonic solid

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Dislocation climb strengthening in systems with immobile obstacles: Three-dimensional level-set simulation study

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Physical Review B 2010年第5期81卷 054104-054104页

作者： Zi Chen Kevin T. Chu David J. Srolovitz Jeffrey M. Rickman Mikko P. Haataja Department of Mechanical and Aerospace Engineering Princeton University Princeton New Jersey 08540 USA Princeton Institute for the Science and Technology of Materials (PRISM) Princeton University Princeton New Jersey 08540 USA Vitamin D Inc. Menlo Park California 94025 USA Institute of High Performance Computing Singapore Singapore Department of Materials Science and Engineering Lehigh University Bethlehem Pennsylvania 18015 USA Department of Physics Lehigh University Bethlehem Pennsylvania 18015 USA Program in Applied and Computational Mathematics (PACM) Princeton University Princeton New Jersey 08540 USA

We employ a parallel, three-dimensional level-set code to simulate the dynamics of isolated dislocation lines and loops in an obstacle-rich environment. This system serves as a convenient prototype of those in which extended, one-dimensional objects interact with obstacles and the out-of-plane motion of these objects is key to understanding their pinning-depinning behavior. In contrast to earlier models of dislocation motion, we incorporate long-ranged interactions among dislocation segments and obstacles to study the effect of climb on dislocation dynamics in the presence of misfitting penetrable obstacles/solutes, as embodied in an effective climb mobility. Our main observations are as follows. First, increasing climb mobility leads to more effective pinning by the obstacles, implying increased strengthening. Second, decreasing the range of interactions significantly reduces the effect of climb. The dependence of the critical stress on obstacle concentration and misfit strength is also explored and compared with existing models. In particular, our results are shown to be in reasonable agreement with the Friedel-Suzuki theory. Finally, the limitations inherent in the simplified model employed here, including the neglect of some lattice effects and the use of a coarse-grained climb mobility, are discussed.

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