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Dense matter with eXTP

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science China(Physics,Mechanics & Astronomy) 2019年第2期62卷 28-44页

作者： Anna L.Watts WenFei Yu Juri Poutanen Shu Zhang Sudip Bhattacharyya Slavko Bogdanov Long Ji Alessandro Patruno Thomas E.Riley Pavel Bakala Altan Baykal Federico Bernardini Ignazio Bombaci Edward Brown Yuri Cavecchi Deepto Chakrabarty Jér?me Chenevez Nathalie Degenaar Melania Del Santo Tiziana Di Salvo Victor Doroshenko Maurizio Falanga Robert D.Ferdman Marco Feroci Angelo F.Gambino MingYu Ge Svenja K.Greif Sebastien Guillot Can Gungor Dieter H.Hartmann Kai Hebeler Alexander Heger Jeroen Homan Rosario Iaria Jean in 't Zand Oleg Kargaltsev Aleksi KurkelaTheoretical Physics department CERN XiaoYu Lai Ang Li XiangDong Li ZhaoSheng Li Manuel Linares FangJun Lu Simin Mahmoodifar Mariano Méndez M.Coleman Miller Sharon Morsink Joonas N?ttil? Andrea Possenti Chanda Prescod-Weinstein JinLu Qu Alessandro Riggio Tuomo Salmi Andrea Sanna Andrea Santangelo Hendrik Schatz Achim Schwenk LiMing Song Eva?rámková Benjamin Stappers Holger Stiele Tod Strohmayer Ingo Tews Laura Tolos Gabriel T?r?k David Tsang Martin Urbanec Andrea Vacchi RenXin Xu YuPeng Xu Silvia Zane GuoBao Zhang ShuangNan Zhang WenDa Zhang ShiJie Zheng Xia Zhou Anton Pannekoek Institute for Astronomy University of Amsterdam Shanghai Astronomical Observatory Tuorla Observatory Department of Physics and Astronomy University of Turku Nordita KTH Royal Institute of Technology and Stockholm University Institute of High Energy Physics Chinese Academy Sciences Tata Institute of Fundamental Research Columbia Astrophysics Laboratory Columbia University Institut für Astronomie und Astrophysik Tübingen Universit?t Tübingen Leiden Observatory Leiden University Research Center for Computational Physics and Data Processing Silesian University in Opava Physics Department Middle East Technical University INAF Osservatorio Astronomico di Roma New York University Abu Dhabi Dipartimento di Fisica Enrico Fermi University of Pisa INFN Italian National Institute for Nuclear Physics Department of Physics and Astronomy Michigan State University Department of Astrophysical Sciences Princeton University Mathematical Sciences and STAG Research Centre University of Southampton MIT Kavli Institute for Astrophysics and Space Research DTU Space Technical University of Denmark INAF/IASF Palermo via Ugo La Malfa 153 Universita degli Studi di Palermo Dipartimento di Fisica e Chimica International Space Science Institute (ISSI) Faculty of Science University of East Anglia INAF Istituto di Astrofisica e Planetologie Spaziali Institut für Kernphysik Technische Universit?t Darmstadt ExtreMe Matter Institute EMMI GSI Helmholtzzentrum für Schwerionenforschung GmbH Instituto de Astrof'?sica Pontificia Universidad Católica de Chile Department of Physics & Astronomy Kinard Lab of Physics Clemson University School of Physics and Astronomy Monash University SRON Netherlands Institute for Space Research Department of Physics The George Washington University Faculty of Science and Technology University of Stavanger School of Physics and Mechanical & Electrical Engineering Hubei University of Education Department of Astronomy Xiamen University (Haiyun Campus) School of Astronomy and Space

In this White Paper we present the potential of the Enhanced X-ray Timing and Polarimetry(eXTP) mission for determining the nature of dense matter; neutron star cores host an extreme density regime which cannot be replicated in a terrestrial laboratory. The tightest statistical constraints on the dense matter equation of state will come from pulse profile modelling of accretion-powered pulsars, burst oscillation sources, and rotation-powered pulsars. Additional constraints will derive from spin measurements, burst spectra, and properties of the accretion flows in the vicinity of the neutron star. Under development by an international Consortium led by the Institute of High Energy Physics of the Chinese Academy of sciences, the eXTP mission is expected to be launched in the mid 2020 s.

关键词： neutron X-rays dense matter equation of state

Modeling temporal networks with bursty activity patterns of nodes and links

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arXiv 2019年

作者： Hiraoka, Takayuki Masuda, Naoki Li, Aming Jo, Hang-Hyun Asia Pacific Center for Theoretical Physics Pohang37673 Korea Republic of Department of Mathematics University at Buffalo State University of New York BuffaloNY14260-2900 United States Computational and Data-Enabled Science and Engineering Program University at Buffalo State University of New York BuffaloNY14260-5030 United States Department of Zoology University of Oxford OxfordOX1 3PS United Kingdom Department of Biochemistry University of Oxford OxfordOX1 3QU United Kingdom Department of Physics Pohang University of Science and Technology Pohang37673 Korea Republic of Department of Computer Science Aalto University EspooFI-00076 Finland

The concept of temporal networks provides a framework to understand how the interaction between system components changes over time. In empirical communication data, we often detect non-Poissonian, so-called bursty behavior in the activity of nodes as well as in the interaction between nodes. However, such reconciliation between node burstiness and link burstiness cannot be explained if the interaction processes on different links are independent of each other. This is because the activity of a node is the superposition of the interaction processes on the links incident to the node and the superposition of independent bursty point processes is not bursty in general. Here we introduce a temporal network model based on bursty node activation and show that it leads to heavy-tailed inter-event time distributions for both node dynamics and link dynamics. Our analysis indicates that activation processes intrinsic to nodes give rise to dynamical correlations across links. Our framework offers a way to model competition and correlation between links, which is key to understanding dynamical processes in various systems. Copyright © 2019, The Authors. All rights reserved.

关键词： Chemical activation

Mutual clustering on comparative texts via heterogeneous information networks

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arXiv 2019年

作者： Cao, Jianping Wang, Senzhang Wen, Danyan Peng, Zhaohui Yu, Philip S. Wang, Fei-yue Research Center for Military Computational Experiments and Parallel Systems Technology National University of Defense Technology Changsha410073 China Ministry of Industry and Information Technology Nanjing211106 China School of Economics & Management Nanjing University of Science and Technology Nanjing210094 China School of Computer Science and Technology Shandong University Qingdao China Department of Computer Science University of Illinois at Chicago Chicago60607 United States Institute for Data Science Tsinghua University Beijing100084 China Beijing China Qingdao Academy of Intelligent Industries Qingdao266000 China Institute of Systems Engineering Macau University of Science and Technology Macau999078 China

Currently, many intelligence systems contain the texts from multi-sources, e.g., bulletin board system (BBS) posts, tweets and news. These texts can be "comparative" since they may be semantically correlated and thus provide us with different perspectives toward the same topics or events. To better organize the multi-sourced texts and obtain more comprehensive knowledge, we propose to study the novel problem of Mutual Clustering on Comparative Texts (MCCT), which aims to cluster the comparative texts simultaneously and collaboratively. The MCCT problem is difficult to address because 1) comparative texts usually present different data formats and structures and thus they are hard to organize, and 2) there lacks an effective method to connect the semantically correlated comparative texts to facilitate clustering them in an unified way. To this aim, in this paper we propose a Heterogeneous Information Network-based Text clustering framework HINT. HINT first models multi-sourced texts (e.g. news and tweets) as heterogeneous information networks by introducing the shared "anchor texts" to connect the comparative texts. Next, two similarity matrices based on HINT as well as a transition matrix for cross-text-source knowledge transfer are constructed. Comparative texts clustering are then conducted by utilizing the constructed matrices. Finally, a mutual clustering algorithm is also proposed to further unify the separate clustering results of the comparative texts by introducing a clustering consistency constraint. We conduct extensive experimental on three tweets-news datasets, and the results demonstrate the effectiveness and robustness of the proposed method in addressing the MCCT problem. Copyright © 2019, The Authors. All rights reserved.

关键词： Clustering algorithms

High temperature structure detection in ferromagnets

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arXiv 2018年

作者： Cao, Yuan Neykov, Matey Liu, Han Program in Applied and Computational Mathematics Princeton University PrincetonNJ United States Department of Statistics & Data Science Carnegie Mellon University PittsburghPA United States Department of Electrical Engineering and Computer Science Northwestern University EvanstonIL United States

This paper studies structure detection problems in high temperature ferromagnetic (positive interaction only) Ising models. The goal is to distinguish whether the underlying graph is empty, i.e., the model consists of independent Rademacher variables, versus the alternative that the underlying graph contains a subgraph of a certain structure. We give matching upper and lower minimax bounds under which testing this problem is possible/impossible respectively. Our results reveal that a key quantity called graph arboricity drives the testability of the problem. On the computational front, under a conjecture of the computational hardness of sparse principal component analysis, we prove that, unless the signal is strong enough, there are no polynomial time linear tests on the sample covariance matrix which are capable of testing this problem. Copyright © 2018, The Authors. All rights reserved.

关键词： Ferromagnetism

End-to-end symmetry preserving inter-atomic potential energy model for finite and extended systems 18

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End-to-end symmetry preserving inter-atomic potential energy...

Proceedings of the 32nd International Conference on Neural Information Processing Systems

作者： Linfeng Zhang Jiequn Han Han Wang Wissam A. Saidi Roberto Car E. Weinan Program in Applied and Computational Mathematics Princeton University Institute of Applied Physics and Computational Mathematics China and CAEP Software Center for High Performance Numerical Simulation China Department of Mechanical Engineering and Materials Science University of Pittsburgh Program in Applied and Computational Mathematics Princeton University and Department of Chemistry and Department of Physics Princeton University and Princeton Institute for the Science and Technology of Materials Princeton University Program in Applied and Computational Mathematics Princeton University and Department of Mathematics Princeton University and Beijing Institute of Big Data Research China

Machine learning models are changing the paradigm of molecular modeling, which is a fundamental tool for material science, chemistry, and computational biology. Of particular interest is the inter-atomic potential energy surface (PES). Here we develop Deep Potential - Smooth Edition (DeepPot-SE), an end-to-end machine learning-based PES model, which is able to efficiently represent the PES of a wide variety of systems with the accuracy of ab initio quantum mechanics models. By construction, DeepPot-SE is extensive and continuously differentiable, scales linearly with system size, and preserves all the natural symmetries of the system. Further, we show that DeepPot-SE describes finite and extended systems including organic molecules, metals, semiconductors, and insulators with high fidelity.

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Learning from learning machines: A new generation of AI technology to meet the needs of science

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arXiv 2021年

作者： Pion-Tonachini, Luca Bouchard, Kristofer Martin, Hector Garcia Peisert, Sean Holtz, W. Bradley Aswani, Anil Dwivedi, Dipankar Wainwright, Haruko Pilania, Ghanshyam Nachman, Benjamin Marrone, Babetta L. Falco, Nicola Prabhat Arnold, Daniel Wolf-Yadlin, Alejandro Powers, Sarah Climer, Sharlee Jackson, Quinn Carlson, Ty Sohn, Michael Zwart, Petrus Kumar, Neeraj Justice, Amy Tomlin, Claire Jacobson, Daniel Micklem, Gos Gkoutos, Georgios V. Bickel, Peter J. Cazier, Jean-Baptiste Müller, Juliane Webb-Robertson, Bobbie-Jo Stevens, Rick Anderson, Mark Kreutz-Delgado, Ken Mahoney, Michael W. Brown, James B. Pattern Computer Inc. Friday HarborWA98250 United States Biosciences Area Lawrence Berkeley National Lab BerkeleyCA94803 United States Computational Research Division Lawrence Berkeley National Lab BerkeleyCA94720 United States Helen Wils Neuroscience Institute Redwood Center for Theoretical Neuroscience Uc Berkeley BerkeleyCA94720 United States Doe Agile BioFoundry Lawrence Berkeley National Laboratory BerkeleyCA94803 United States Joint BioEnergy Institute Lawrence Berkeley National Laboratory BerkeleyCA94803 United States Bcam Basque Center for Applied Mathematics Bilbao48009 Spain Computer Science University of California Davis DavisCA95616 United States Cenic La MiradaCA90638 United States Health Informatics University of California Davis School of Medicine SacramentoCA95817 United States Berkeley Institute for Data Science University of California Berkeley BerkeleyCA94720 United States Industrial Engineering and Operations Research University of California Berkeley BerkeleyCA94720 United States Environmental & Earth Sciences Area Lawrence Berkeley National Laboratory BerkeleyCA94803 United States Nuclear Engineering University of California Berkeley BerkeleyCA94720 United States Materials Science and Technology Division Los Alamos National Laboratory Los AlamosNM87545 United States Physics Division Lawrence Berkeley National Lab BerkeleyCA94720 United States Bioscience Division Los Alamos National Laboratory Los AlamosNM87545 United States Earth and Environmental Sciences Area Lawrence Berkeley National Lab BerkeleyCA94803 United States Energy Technologies Area Lawrence Berkeley National Lab BerkeleyCA94803 United States Computing and Computational Sciences Oak Ridge National Laboratory Oak RidgeTN37831 United States Industrial & Systems Engineering The University of Tennessee KnoxvilleTN37996 United States Department of Computer Science University of Missouri-Saint Louis St. LouisMO63121 United

We outline emerging opportunities and challenges to enhance the utility of AI for scientific discovery. The distinct goals of AI for industry versus the goals of AI for science create tension between identifying patterns in data versus discovering patterns in the world from data. If we address the fundamental challenges associated with "bridging the gap" between domain-driven scientific models and data-driven AI learning machines, then we expect that these AI models can transform hypothesis generation, scientific discovery, and the scientific process itself. © 2021, CC BY.

关键词： Learning systems

A study of complex deep learning networks on high-performance, neuromorphic, and quantum computers

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A study of complex deep learning networks on high-performanc...

作者： Potok, Thomas E. Schuman, Catherine Young, Steven Patton, Robert Spedalieri, Federico Liu, Jeremy Yao, Ke-Thia Rose, Garrett Chakma, Gangotree Computational Data Analytics Group Oak Ridge National Laboratory P.O. Box 2008 Oak RidgeTN37831 United States University of Southern California Information Sciences Institute 4676 Admiralty Way Marina del ReyCA90292 United States Department of Electrical Engineering and Computer Science University of Tennessee 1520 Middle Dr KnoxvilleTN37996 United States

Current deep learning approaches have been very successful using convolutional neural networks trained on large graphical-processing-unit-based computers. Three limitations of this approach are that (1) they are based on a simple layered network topology, i.e., highly connected layers, without intra-layer connections;(2) the networks are manually configured to achieve optimal results, and (3) the implementation of the network model is expensive in both cost and power. In this article, we evaluate deep learning models using three different computing architectures to address these problems: quantum computing to train complex topologies, high performance computing to automatically determine network topology, and neuromorphic computing for a low-power hardware implementation. We use the MNIST dataset for our experiment, due to input size limitations of current quantum computers. Our results show the feasibility of using the three architectures in tandem to address the above deep learning *** show that a quantum computer can find high quality values of intra-layer connection weights in a tractable time as the complexity of the network increases, a high performance computer can find optimal layer-based topologies, and a neuromorphic computer can represent the complex topology and weights derived from the other architectures in low power memristive hardware. © 2018 ACM.

关键词： Deep learning

Unsupervised extraction of phenotypes from cancer clinical notes for association studies

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arXiv 2019年

作者： Stark, Stefan G. Hyland, Stephanie L. Pradier, Melanie F. Lehmann, Kjong-Van Wicki, Andreas Perez-Cruz, Fernando Vogt, Julia E. Rätsch, Gunnar Computational Biology Program Memorial Sloan Kettering Cancer Center New York United States Tri-Institutional Ph.D. Program in Computational Biology and Medicine Weill Cornell Medicine New York United States Department of Computer Science ETH Zürich Zürich Switzerland Medical Informatics Group University Hospital Zürich Zürich Switzerland Swiss Institute for Bioinformatics Zurich Switzerland Department of Biology ETH Zürich Zürich Switzerland Department of Signal Processing and Information Theory University Carlos III in Madrid Leganés Spain School of Engineering and Applied Sciences Harvard University CambridgeMA United States Department of Biomedicine University of Basel Basel Switzerland Tumorzentrum University Hospital Basel Basel Switzerland Swiss Data Science Center ETH Zürich and EPFL Lausanne Switzerland Department of Mathematics and Computer Science University of Basel Basel Switzerland

The recent adoption of Electronic Health Records (EHRs) by healthcare providers has introduced an important source of data that provides detailed and highly specific insights into patient phenotypes over large cohorts. These datasets, in combination with machine learning and statistical approaches, generate new opportunities for research and clinical care. However, many methods require the patient representations to be in structured formats, while the information in the EHR is often locked in unstructured text designed for human readability. In this work, we develop the methodology to automatically extract clinical features from clinical narratives from large EHR corpora without the need for prior knowledge. We consider medical terms and sentences appearing in clinical narratives as atomic information units. We propose an efficient clustering strategy suitable for the analysis of large text corpora and utilize the clusters to represent information about the patient compactly. Additionally, we define the sentences on ontologic and natural language vocabularies to automatically detect pertinent combinations of concepts present in the corpus, even when an ontology is not available. To demonstrate the utility of our approach, we perform an association study of clinical features with somatic mutation profiles from 4,007 cancer patients and their tumors. We apply the proposed algorithm to a dataset consisting of .65 thousand documents with a total of .3.2 million sentences. After correcting for cancer type and other confounding factors, we identify a total of 340 significant statistical associations between the presence of somatic mutations and clinical features. We annotated these associations according to their novelty and we report several known associations. We also propose 37 plausible, testable hypothesis for associations where the underlying biological mechanism does not appear to be known. These results illustrate that the automated discovery of clinical features

关键词： Diseases

Extending the π-Conjugated System in Spiro-Type Hole Transport Material Enhances the Efficiency and Stability of Perovskite Solar Modules

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Angewandte Chemie 2023年第29期135卷

作者： Xuepeng Liu Bin Ding Mingyuan Han Zhenhai Yang Jianlin Chen Pengju Shi Xiangying Xue Rahim Ghadari Xianfu Zhang Rui Wang Keith Brooks Li Tao Sachin Kinge Songyuan Dai Jiang Sheng Paul J. Dyson Mohammad Khaja Nazeeruddin Yong Ding Beijing Key Laboratory of Novel Thin-Film Solar Cells School of New Energy North China Electric Power University Beijing 102206 P. R. China Contribution: Investigation (lead) Institute of Chemical Sciences and Engineering École Polytechnique Fédérale de Lausanne (EPFL) 1015 Lausanne Switzerland Contribution: Methodology (lead) Contribution: Methodology (equal) Ningbo Institute of Materials Technology and Engineering Chinese Academy of Sciences (CAS) Ningbo 315201 China Contribution: Data curation (equal) Contribution: Validation (equal) School of Engineering Westlake University Hangzhou 310024 China Contribution: Formal analysis (equal) Contribution: Investigation (equal) Computational Chemistry Laboratory Department of Organic and Biochemistry Faculty of Chemistry University of Tabriz Tabriz *** Iran Contribution: Software (lead) Contribution: Visualization (equal) School of Microelectronic & Faculty of Physics and Electronic Science Hubei University Wuhan 430062 China Toyota Motor Europe Toyota Motor Technical Centre Advanced Technology Div. Hoge Wei 33 1930 Zaventum Belgium Contribution: Resources (equal) Contribution: Supervision (equal) Contribution: Writing - original draft (equal) Writing - review & editing (equal) Contribution: Conceptualization (equal) Writing - original draft (equal) Writing - review & editing (equal) Contribution: Supervision (equal) Writing - original draft (lead)

Hole transport materials (HTMs) are a key component of perovskite solar cells (PSCs). The small molecular 2,2′,7,7′-tetrakis(N,N-di-p-methoxyphenyl)-amine-9,9′-spirobifluorene (spiro-OMeTAD, termed “Spiro”) is the most successful HTM used in PSCs, but its versatility is imperfect. To improve its performance, we developed a novel spiro-type HTM (termed “DP”) by substituting four anisole units on Spiro with 4-methoxybiphenyl moieties. By extending the π-conjugation of Spiro in this way, the HOMO level of the HTM matches well with the perovskite valence band, enhancing hole mobility and increasing the glass transition temperature. DP-based PSC achieves high power conversion efficiencies (PCEs) of 25.24 % for small-area (0.06 cm 2 ) devices and 21.86 % for modules (designated area of 27.56 cm 2 ), along with the certified efficiency of 21.78 % on a designated area of 27.86 cm 2 . The encapsulated DP-based devices maintain 95.1 % of the initial performance under ISOS-L-1 conditions after 2560 hours and 87 % at the ISOS-L-3 conditions over 600 hours.

关键词： Hole Transport Materials Modules Perovskite Solar Cells π-Conjugated System Stability