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Artificial intelligence for modelling infectious disease epidemics

Nature 2025年第8051期638卷 623-635页

作者： Kraemer, Moritz U. G. Tsui, Joseph L.-H. Chang, Serina Y. Lytras, Spyros Khurana, Mark P. Vanderslott, Samantha Bajaj, Sumali Scheidwasser, Neil Curran-Sebastian, Jacob Liam Semenova, Elizaveta Zhang, Mengyan Unwin, H. Juliette T. Watson, Oliver J. Mills, Cathal Dasgupta, Abhishek Ferretti, Luca Scarpino, Samuel V. Koua, Etien Morgan, Oliver Tegally, Houriiyah Paquet, Ulrich Moutsianas, Loukas Fraser, Christophe Ferguson, Neil M. Topol, Eric J. Duchêne, David A. Stadler, Tanja Kingori, Patricia Parker, Michael J. Dominici, Francesca Shadbolt, Nigel Suchard, Marc A. Ratmann, Oliver Flaxman, Seth Holmes, Edward C. Gomez-Rodriguez, Manuel Schölkopf, Bernhard Donnelly, Christl A. Pybus, Oliver G. Cauchemez, Simon Bhatt, Samir Pandemic Sciences Institute University of Oxford Oxford United Kingdom Department of Biology University of Oxford Oxford United Kingdom Department of Electrical Engineering and Computer Science University of California Berkeley Berkeley CA United States UCSF UC Berkeley Joint Program in Computational Precision Health Berkeley CA United States Division of Systems Virology Department of Microbiology and Immunology The Institute of Medical Science The University of Tokyo Tokyo Japan Section of Epidemiology Department of Public Health University of Copenhagen Copenhagen Denmark Oxford Vaccine Group University of Oxford and NIHR Oxford Biomedical Research Centre Oxford United Kingdom Department of Epidemiology and Biostatistics Imperial College London London United Kingdom Department of Computer Science University of Oxford Oxford United Kingdom School of Mathematics University of Bristol Bristol United Kingdom MRC Centre for Global Infectious Disease Analysis School of Public Health Imperial College London London United Kingdom Department of Statistics University of Oxford Oxford United Kingdom Doctoral Training Centre University of Oxford Oxford United Kingdom Institute for Experiential AI Northeastern University MA Boston Thailand Santa Fe Institute Santa Fe NM United States World Health Organization Regional Office for Africa Brazzaville Congo WHO Hub for Pandemic and Epidemic Intelligence Health Emergencies Programme World Health Organization Berlin Germany Centre for Epidemic Response and Innovation (CERI) School for Data Science and Computational Thinking Stellenbosch University Stellenbosch South Africa African Institute for Mathematical Sciences (AIMS) South Africa Muizenberg Cape Town South Africa Genomics England London United Kingdom Scripps Research La Jolla CA United States Department of Biosystems Science and Engineering ETH Zürich Basel Switzerland Swiss Institute of Bioinformatics Lausanne Switzerland The Ethox Centre Nuffield

Infectious disease threats to individual and public health are numerous, varied and frequently unexpected. Artificial intelligence (AI) and related technologies, which are already supporting human decision making in economics, medicine and social science, have the potential to transform the scope and power of infectious disease epidemiology. Here we consider the application to infectious disease modelling of AI systems that combine machine learning, computational statistics, information retrieval and data science. We first outline how recent advances in AI can accelerate breakthroughs in answering key epidemiological questions and we discuss specific AI methods that can be applied to routinely collected infectious disease surveillance data. Second, we elaborate on the social context of AI for infectious disease epidemiology, including issues such as explainability, safety, accountability and ethics. Finally, we summarize some limitations of AI applications in this field and provide recommendations for how infectious disease epidemiology can harness most effectively current and future developments in AI. © Springer Nature Limited 2025.

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Terahertz spin dynamics in rare-earth orthoferrites

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Photonics Insights 2022年第2期1卷 1-56页

作者： Xinwei Li Dasom Kim Yincheng Liu Junichiro Kono Department of Physics California Institute of TechnologyPasadenaUSA Department of Electrical and Computer Engineering Rice UniversityHoustonUSA Applied Physics Graduate Program Smalley-Curl InstituteRice UniversityHoustonUSA Department of Physics and Astronomy Rice UniversityHoustonUSA Department of Materials Science and NanoEngineering Rice UniversityHoustonUSA

Recent interest in developing fast spintronic devices and laser-controllable magnetic solids has sparked tremendous experimental and theoretical efforts to understand and manipulate ultrafast dynamics in *** of spin dynamics in the terahertz(THz)frequency range are particularly important for elucidating microscopic pathways toward novel device ***,we review THz phenomena related to spin dynamics in rare-earth orthoferrites,a class of materials promising for antiferromagnetic *** expand this topic into a description of four key elements.(1)We start by describing THz spectroscopy of spin excitations for probing magnetic phase transitions in thermal *** acoustic magnons are useful indicators of spin reorientation transitions,electromagnons that arise from dynamic magnetoelectric couplings serve as a signature of inversion-symmetry-breaking phases at low temperatures.(2)We then review the strong laser driving scenario,where the system is excited far from equilibrium and thereby subject to modifications to the free-energy *** pathways for ultrafast laser manipulation of magnetic order are discussed.(3)Furthermore,we review a variety of protocols to manipulate coherent THz magnons in time and space,which are useful capabilities for antiferromagnetic spintronic applications.(4)Finally,new insights into the connection between dynamic magnetic coupling in condensed matter and the Dicke superradiant phase transition in quantum optics are *** presenting a review on an array of THz spin phenomena occurring in a single class of materials,we hope to trigger interdisciplinary efforts that actively seek connections between subfields of spintronics,which will facilitate the invention of new protocols of active spin control and quantum phase engineering.

关键词： terahertz spin dynamics magnetism orthoferrite ultrafast spectroscopy magneto-optics

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Microwave Synthesis of Nanostructured High Entropy Spinel

SSRN

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SSRN 2022年

作者： Gunnewiek, Rodolfo Foster Klein Cardoso, André L.F. Perdomo, Claudia P.F. Foschiani, Beatriz G. Xaraba, Julia A. Zabotto, Fabio L. Federal University of Sao Carlos Graduate Program in Materials Science and Engineering SP Sao Carlos Brazil Federal University of Sao Carlos Department of Materials Engineering SP São Carlos Brazil Federal University of Sao Carlos Department of Physics SP São Carlos Brazil

A single-phase cubic high entropy spinel (HES) (CoCrFeMnNi)3O4 was microwave synthesized by a polymer-based method. The complete microwave-synthesis took no longer than 2 hours. The HEŚs were characterized by X-ray diffractometry (XRD), transmission electron microscopy (TEM) and diffuse reflectance spectroscopy (DRS). After calcination of 800 and 900 °C, the powders showed nanostructured cubic single-phases. The band gap energy (Eg) of the microwave irradiated HES was 2.2 eV compared to the 2.45 eV of the conventionally calcined. These Eg values indicate application possibilities in the field of catalytic reforming of carbon dioxide as a promising catalyst with tunable properties. © 2022, The Authors. All rights reserved.

关键词： Entropy

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Are regional precipitation-productivity relationships robust to decadal-scale dry period?

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Journal of Plant Ecology 2022年第4期15卷 711-720页

作者： Zhongmin Hu Minqi Liang Alan Knapp Jianyang Xia Wenping Yuan School of Geography South China Normal UniversityShipai CampusGuangzhou 510631China College of Ecology and Environment Hainan UniversityHaikou 570228China Southern Marine Science and Engineering Guangdong Laboratory(Zhuhai) Zhuhai 519082China Department of Biology and Graduate Degree Program in Ecology Colorado State UniversityFort CollinsCO 80523USA Tiantong National Forest Ecosystem Observation and Research Station School of Ecological and Environmental SciencesEast China Normal UniversityShanghai 200062China Institute of Eco-Chongming(IEC) Shanghai 200062China School of Atmospheric Sciences Sun Yat-Sen UniversityGuangzhou 519082China

Precipitation(PPT)is the primary climatic determinant of plant growth and aboveground net primary productivity(ANPP)for many of the world’s major terrestrial ***,relationships between PPT and productivity can provide insight into how changes in climate may alter ecosystem functions *** PPT–ANPP relationships for grasslands are found remarkably similar around the world,but whether and how they change during periods of extended climatic anomalies remain ***,we quantifed how regional-scale PPTANPP relationships vary between an extended wet and a dry period by taking advantage of a 35-year record of PPT and NDVI(as a surrogate for ANPP)at 1700 sites in the temperate grasslands of northern *** found a sharp decrease in the strength of the spatial PPT–ANPP relationship during an 11-year period of below average *** attributed the collapse of this relationship to asynchrony in the responses of different grassland types to this decadal period of increased *** results challenge the robustness of regional PPT–productivity if aridity in grasslands is increased globally by climate change.

关键词： grassland net primary productivity precipitation–productivity relation drought climate change NDVI

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Quantum simulation of an extended Dicke model with a magnetic solid

Communications Materials

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Communications Materials 2024年第1期5卷 1-9页

作者： Marquez Peraca, Nicolas Li, Xinwei Moya, Jaime M. Hayashida, Kenji Kim, Dasom Ma, Xiaoxuan Neubauer, Kelly J. Fallas Padilla, Diego Huang, Chien-Lung Dai, Pengcheng Nevidomskyy, Andriy H. Pu, Han Morosan, Emilia Cao, Shixun Bamba, Motoaki Kono, Junichiro Department of Physics and Astronomy Rice University HoustonTX United States Department of Physics California Institute of Technology PasadenaCA United States Applied Physics Graduate Program Smalley–Curl Institute Rice University HoustonTX United States Division of Applied Physics Graduate School of Engineering Hokkaido University Hokkaido Japan Department of Electrical and Computer Engineering Rice University HoustonTX United States Department of Physics International Center of Quantum and Molecular Structures and Materials Genome Institute Shanghai University Shanghai China Department of Physics and Center for Quantum Frontiers of Research and Technology National Cheng Kung University Tainan Taiwan Department of Chemistry Rice University HoustonTX United States Department of Physics I Kyoto University Kyoto Japan The Hakubi Center for Advanced Research Kyoto University Kyoto Japan PRESTO Japan Science and Technology Agency Saitama Japan Department of Physics Yokohama National University Yokohama Japan Department of Materials Science and NanoEngineering Rice University HoustonTX United States

The Dicke model describes the cooperative interaction of an ensemble of two-level atoms with a single-mode photonic field and exhibits a quantum phase transition as a function of light–matter coupling strength. Extending this model by incorporating short-range atom–atom interactions makes the problem intractable but is expected to produce new physical phenomena and phases. Here, we simulate such an extended Dicke model using a crystal of ErFeO3, where the role of atoms (photons) is played by Er3+ spins (Fe3+ magnons). Through terahertz spectroscopy and magnetocaloric effect measurements as a function of temperature and magnetic field, we demonstrated the existence of a novel atomically ordered phase in addition to the superradiant and normal phases that are expected from the standard Dicke model. Further, we elucidated the nature of the phase boundaries in the temperature–magnetic-field phase diagram, identifying both first-order and second-order phase transitions. These results lay the foundation for studying multiatomic quantum optics models using well-characterized many-body solid-state systems. © The Author(s) 2024.

关键词： Atoms

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Multiscale Numerical Modeling for Near-Field Microwave Impedance Microscopy

Multiscale Numerical Modeling for Near-Field Microwave Imped...

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Conference on Lasers and Electro-Optics (CLEO)

作者： Diego Tami Douglas A. A. Ohlberg Jhonattan C. Ramirez Cássio Gonçalves Do Rego Gilberto Medeiros-Ribeiro Graduate Program in Electrical Engineering Universidade Federal de Minas Gerais Brazil Microscopy Center Universidade Federal de Minas Gerais Brazil Department of Electronic Engineering Universidade Federal de Minas Gerais Brazil Computer Science Department Universidade Federal de Minas Gerais Brazil

In this work, we analyzed numerically a multiscale nanosystem based on sMIM on TBG. Spontaneous formation of a water-meniscus by the approximation between the tip-sample concentrates the microwave fields, reaching res... 详细信息

ISBN: (数字)9781957171050

ISBN: (纸本)9781665466660

关键词： Microscopy Masers Lasers and electrooptics Laser modes Numerical models Impedance Electrooptical waveguides

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Local Order Metrics for Two-Phase Media Across Length Scales

arXiv

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arXiv 2022年

作者： Torquato, Salvatore Skolnick, Murray Kim, Jaeuk Department of Chemistry Department of Physics Princeton Institute for the Science and Technology of Materials Program in Applied and Computational Mathematics Princeton University PrincetonNJ08544 United States Department of Chemistry Princeton University PrincetonNJ08544 United States McKetta Department of Chemical Engineering University of Texas at Austin AustinTX78712 United States

The capacity to devise order metrics for microstructures of multiphase heterogeneous media is a highly challenging task, given the richness of the possible geometries and topologies of the phases that can arise. This investigation initiates a program to formulate order metrics to characterize the degree of order/disorder of the microstructures of two-phase media in d-dimensional Euclidean space Rd across length scales. In particular, we propose the use of the local volume-fraction variance σV2 (R) associated with a spherical window of radius R as an order metric. We determine σV2 (R) as a function of R for 22 different models across the first three space dimensions, including both hyperuniform and nonhyperuniform systems with varying degrees of short- and long-range order. We find that the local volume-fraction variance as well as asymptotic coefficients and integral measures derived from it provide reasonably robust and sensitive order metrics to categorize disordered and ordered two-phase media across all length scales. © 2022, CC BY-SA.

关键词： Volume fraction

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Improving quantitation accuracy in isobaric-labeling mass spectrometry experiments with spectral library searching and feature-based peptide-spectrum match filter

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Scientific Reports 2023年第1期13卷 1-10页

作者： Kuo, Tzu-Yun Wang, Jen-Hung Huang, Yung-Wen Sung, Ting-Yi Chen, Ching-Tai Department of Biochemical Science and Technology National Taiwan University Taipei 10617 Taiwan Bioinformatics Program Taiwan International Graduate Program Institute of Statistical Science Academia Sinica Taipei 11529 Taiwan Institute of Information Science Academia Sinica Taipei 11529 Taiwan Institute of Biomedical Informatics National Yang Ming Chiao Tung University Taipei 11221 Taiwan Department of Computer Science and Information Engineering National Taiwan University Taipei 10617 Taiwan Department of Bioinformatics and Biomedical Engineering Asia University Taichung 41354 Taiwan Center for Precision Health Research Asia University Taichung 41354 Taiwan

Isobaric labeling relative quantitation is one of the dominating proteomic quantitation technologies. Traditional quantitation pipelines for isobaric-labeled mass spectrometry data are based on sequence database searching. In this study, we present a novel quantitation pipeline that integrates sequence database searching, spectral library searching, and a feature-based peptide-spectrum-match (PSM) filter using various spectral features for filtering. The combined database and spectral library searching results in larger quantitation coverage, and the filter removes PSMs with larger quantitation errors, retaining those with higher quantitation accuracy. Quantitation results show that the proposed pipeline can improve the overall quantitation accuracy at the PSM and protein levels. To our knowledge, this is the first study that utilizes spectral library searching to improve isobaric labeling-based quantitation. For users to conveniently perform the proposed pipeline, we have implemented the feature-based filter being executable on both Windows and Linux platforms;its executable files, user manual, and sample data sets are freely available at https://***/comics/Software_*** . Furthermore, with the developed filter, the proposed pipeline is fully compatible with the Trans-Proteomic Pipeline. © 2023, Springer Nature Limited.

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Structural, optical, and thermal properties of BN thin films grown on diamond via pulsed laser deposition

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Physical Review Materials 2023年第9期7卷 094602-094602页

作者： Abhijit Biswas Gustavo A. Alvarez Tao Li Joyce Christiansen-Salameh Eugene Jeong Anand B. Puthirath Sathvik Ajay Iyengar Chenxi Li Tia Gray Xiang Zhang Tymofii S. Pieshkov Harikishan Kannan Jacob Elkins Robert Vajtai A. Glen Birdwell Mahesh R. Neupane Elias J. Garratt Bradford B. Pate Tony G. Ivanov Yuji Zhao Zhiting Tian Pulickel M. Ajayan Department of Materials Science and Nanoengineering Rice University Houston Texas 77005 USA Sibley School of Mechanical and Aerospace Engineering Cornell University Ithaca New York 14853 USA Department of Electrical and Computer Engineering Rice University Houston Texas 77005 USA Applied Physics Graduate Program Smalley-Curl Institute Rice University Houston Texas 77005 USA DEVCOM Army Research Laboratory RF Devices and Circuits Adelphi Maryland 20783 USA Naval Research Laboratory Chemistry Division Washington District of Columbia 20375 USA

Heterostructures based on ultrawide-bandgap (UWBG) semiconductors (bandgap>4.0eV), such as BN and diamond, hold significant importance for the development of high-power electronics in the next generation. However, achieving in situ heteroepitaxy of BN/diamond or vice versa remains exceptionally challenging due to the complex growth kinetics involved. In this work, we grew BN thin film on (100) single-crystal diamonds using pulsed laser deposition and investigated its structural, magnetic, optical, and thermal properties. The structural analyses confirmed the growth of BN films, which exhibited diamagnetic behavior at room temperature. Notably, the film demonstrated anisotropic refractive index characteristics within the visible-to-near-infrared wavelength range. The room-temperature cross-plane thermal conductivity of BN is 1.53 ± 0.77 W/mK, while the thermal conductance of the BN/diamond interface is 20±2MW/m2K. These findings have significant implications for a range of device applications based on UWBG BN/diamond heterostructures.

关键词： Growth Thermal conductivity Boron nitride Thin films Wide band gap systems Film deposition Laser ablation Thermoreflectance

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A Novel Method for the Fabrication of Antibacterial Stainless Steel with Uniform Silver Dispersions by Silver Nanoparticle/Polyethyleneimine Composites

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Materials 2023年第10期16卷 3719-3719页

作者： Chih, Yu-Kun You, Jhu-Lin Lin, Wei-Hsuan Chang, Yen-Hao Tseng, Chun-Chieh Ger, Ming-Der Graduate School of Defense Science Chung Cheng Institute of Technology National Defense University Taoyuan335 Taiwan Department of Chemical and Materials Engineering Chung Cheng Institute of Technology National Defense University Taoyuan335 Taiwan System Engineering and Technology Program National Chiao Tung University Hsinchu300 Taiwan Combination Medical Device Technology Division Medical Devices and Opto-Electronics Equipment Department Metal Industries Research & Development Centre Kaohsiung821 Taiwan

Only a few studies have so far focused on the addition of silver to SS316L alloys by conventional sintering methods. Unfortunately, the metallurgical process of silver-containing antimicrobial SS is greatly limited due to the extremely low solubility of silver in iron and its tendency to precipitate at the grain boundaries, resulting in an inhomogeneous distribution of the antimicrobial phase and loss of antimicrobial properties. In this work, we present a novel approach to fabricate antibacterial stainless steel 316L by functional polyethyleneimine-glutaraldehyde copolymer (PEI-co-GA/Ag catalyst) composites. PEI is a highly branched cationic polymer, which makes it exhibit very good adhesion on the surface of the substrate. Unlike the effect of the conventional silver mirror reaction, the introduction of functional polymers can effectively improve the adhesion and distribution of Ag particles on the surface of 316LSS. It can be seen from the SEM images that a large number of silver particles are retained and well dispersed in 316LSS after sintering. PEI-co-GA/Ag 316LSS exhibits excellent antimicrobial properties and does not release free silver ions to affect the surrounding environment. Furthermore, the probable mechanism for the influence of the functional composites on the enhancement of adhesion is also proposed. The formation of a large number of hydrogen bonds and van der Waals forces, as well as the negative zeta potential of the 316LSS surface, can effectively enable the formation of a tight attraction between the Cu layer and the surface of 316LSS. These results meet our expectations of designing passive antimicrobial properties on the contact surface of medical devices. © 2023 by the authors.

关键词： Silver nanoparticles

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