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arXiv 2023年

作者： Sappington, Anna Mohanty, Vaibhav Department of Electrical Engineering and Computer Science Massachusetts Institute of Technology CambridgeMA02139 United States Program for Health Sciences and Technology Harvard Medical School BostonMA02115 United States Massachusetts Institute of Technology CambridgeMA02139 United States Harvard/MIT MD-PhD Program Harvard Medical School BostonMA02115 United States Department of Chemistry and Chemical Biology Harvard University CambridgeMA02138 United States

Recent studies of genotype-phenotype (GP) maps have reported universally enhanced phenotypic robustness to genotype mutations, a feature essential to evolution. Virtually all of these studies make a simplifying assumption that each genotype—represented as a sequence—maps deterministically to a single phenotype, such as a discrete structure. Here, we introduce probabilistic genotype-phenotype (PrGP) maps, where each genotype maps to a vector of phenotype probabilities, as a more realistic and universal language for investigating robustness in a variety of physical, biological, and computational systems. We study three model systems to show that PrGP maps offer a generalized framework which can handle uncertainty emerging from various physical sources: (1) thermal fluctuation in RNA folding, (2) external field disorder in spin glass ground state finding, and (3) superposition and entanglement in quantum circuits, which are realized experimentally on IBM quantum computers. In all three cases, we observe a novel biphasic robustness scaling which is enhanced relative to random expectation for more frequent phenotypes and approaches random expectation for less frequent phenotypes. We derive an analytical theory for the behavior of PrGP robustness, and we demonstrate that the theory is highly predictive of empirical robustness. © 2023, CC BY.

关键词： Quantum computers

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Relative magnetic field and slipping effect on Casson dusty fluid of two phase fluctuating flow over inclined parallel plate

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South African Journal of Chemical engineering 2023年 44卷 135-146页

作者： khan, Dolat Kumam, Poom Kumam, Wiyada Suttiarporn, Panawan Rehman, Ali Fixed Point Research Laboratory Fixed Point Theory and Applications Research Group Center of Excellence in Theoretical and Computational Science (TaCS-CoE) Faculty of Science King Mongkut's University of Technology Thonburi (KMUTT) 126 Pracha Uthit Rd. Bang Mod Bangkok Thung Khru 10140 Thailand Center of Excellence in Theoretical and Computational Science (TaCS-CoE) Faculty of Science King Mongkut's University of Technology Thonburi (KMUTT) 126 Pracha Uthit Rd. Bang Mod Bangkok Thung Khru 10140 Thailand Applied Mathematics for Science and Engineering Research Unit (AMSERU) Program in Applied Statistics Department of Mathematics and Computer Science Faculty of Science and Technology Rajamangala University of Technology Thanyaburi (RMUTT) Pathum Thani 12110 Thailand Faculty of Science Energy and Environment King Mongkut's University of Technology North Bangkok Rayong Campus Rayong 21120 Thailand Special Interest Group for Modelling and Data Analytics Faculty of Ocean Engineering Technology and Informatics Universiti Malaysia Terengganu Terengganu Kuala Nerus 21030 Malaysia

Due to its significant applications in magnetic devices for cell separation, magnetic drugs for cancer tumor treatment, blood flow adjustment during surgery, magnetic endoscopy, and fluid pumping in industrial and engineering processes, magnetohydrodynamics (MHD) has a wide range of applications. Therefore, the aim of this study to investigate the Relative Magnetic Field and slipping effect on Casson dusty fluid of two-phase fluctuating flow over inclined parallel plate. More exactly, the relative magnetic phenomena are fixed relatively to the plate (MFFRP) or fixed relatively to the fluid (MFFRF). The mathematical modeling was established as the set of partial differential equations for dusty Casson fluid. Buckingham's pi theorem is used to find out the dimensionless variables, to make our system dimensionless. The solution in perturb form is to find out by incorporating Poincare–Lighthill perturbation technique (PLPT). To know in-depth different parameters the graphical results for both velocities are plotted with the help of software Mathcad- 15. It is clearly detected that the relative magnetic field performs a vital part in the fluid as well as particle motion. Moreover, the relative magnetic field play a vital role in the decreasing of skin friction of both plates. © 2023

关键词： Brinkman fluid Dust particles Fluctuating vertical plate Inclined relative magnetic field PLPT

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Nanoslot-Induced Ultrastrong Phonon-Photon and Phonon-Phonon Coupling in Hybrid Organic-Inorganic Perovskites 16

Nanoslot-Induced Ultrastrong Phonon-Photon and Phonon-Phonon...

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16th Pacific Rim Conference on Lasers and Electro-Optics, CLEO-PR 2024

作者： Kim, Dasom Hou, Jin Lee, Geon Agrawal, Ayush Kim, Sunghwan Zhang, Hao Bao, Di Baydin, Andrey Wu, Wenjing Tay, Fuyang Huang, Shengxi Hagenmüller, Daivd Chia, Elbert E. M. Kim, Dai-Sik Seo, Minah Mohite, Aditya D. Kono, Junichiro Applied Physics Graduate Program Smalley-Curl Institute Rice University HoustonTX77005 United States Department of Electrical and Computer Engineering Rice University HoustonTX77005 United States Department of Materials Science and NanoEngineering Rice University HoustonTX77005 United States Sensor System Research Center Korea Institute of Science and Technology Seoul02792 Korea Republic of Department of Physics and Astronomy Seoul National University Seoul08826 Korea Republic of Department of Chemical and Biomolecular Engineering Rice University HoustonTX77005 United States Ulsan44919 Korea Republic of Division of Physics and Applied Physics School of Physical and Mathematical Sciences Nanyang Technological University 637371 Singapore Smalley-Curl Institute Rice University HoustonTX77005 United States Université de Strasbourg Cnrs Strasbourg67000 France KU-KIST Graduate School of Converging Science and Technology Korea University Seoul02841 Korea Republic of Department of Physics and Astronomy Rice University HoustonTX77005 United States

Methods for harnessing vibrational states are desired for phonon-based technologies. We realized ultrastrong coupling of two phonon modes in perovskite materials induced by ultrastrong coupling with a common photonic ... 详细信息

ISBN: (纸本)9798350372076

关键词： Organic-inorganic materials

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Towards Adversarial Robustness for Multi-Mode Data through Metric Learning

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Sensors 2023年第13期23卷 6173页

作者： Khan, Sarwar Chen, Jun-Cheng Liao, Wen-Hung Chen, Chu-Song Research Center for Information Technology Innovation Academia Sinica Taipei11529 Taiwan Social Networks Human-Centered Computing Taiwan International Graduate Program Academia Sinica Taipei11529 Taiwan Department of Computer Science National Chengchi University Taipei11605 Taiwan Department of Computer Science and Information Engineering National Taiwan University Taipei106319 Taiwan

Adversarial attacks have become one of the most serious security issues in widely used deep neural networks. Even though real-world datasets usually have large intra-variations or multiple modes, most adversarial defense methods, such as adversarial training, which is currently one of the most effective defense methods, mainly focus on the single-mode setting and thus fail to capture the full data representation to defend against adversarial attacks. To confront this challenge, we propose a novel multi-prototype metric learning regularization for adversarial training which can effectively enhance the defense capability of adversarial training by preventing the latent representation of the adversarial example changing a lot from its clean one. With extensive experiments on CIFAR10, CIFAR100, MNIST, and Tiny ImageNet, the evaluation results show the proposed method improves the performance of different state-of-the-art adversarial training methods without additional computational cost. Furthermore, besides Tiny ImageNet, in the multi-prototype CIFAR10 and CIFAR100 where we reorganize the whole datasets of CIFAR10 and CIFAR100 into two and ten classes, respectively, the proposed method outperforms the state-of-the-art approach by 2.22% and 1.65%, respectively. Furthermore, the proposed multi-prototype method also outperforms its single-prototype version and other commonly used deep metric learning approaches as regularization for adversarial training and thus further demonstrates its effectiveness. © 2023 by the authors.

关键词： Deep neural networks

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BENCHMARKING COMMUNITY DRUG RESPONSE PREDICTION MODELS: DATASETS, MODELS, TOOLS, AND METRICS FOR CROSS-DATASET GENERALIZATION ANALYSIS

arXiv

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arXiv 2025年

作者： Partin, Alexander Vasanthakumari, Priyanka Narykov, Oleksandr Wilke, Andreas Koussa, Natasha Jones, Sara E. Zhu, Yitan Overbeek, Jamie C. Jain, Rajeev Fernando, Gayara Demini Sanchez-Villalobos, Cesar Garcia-Cardona, Cristina Mohd-Yusof, Jamaludin Chia, Nicholas Wozniak, Justin M. Ghosh, Souparno Pal, Ranadip Brettin, Thomas S. Weil, M. Ryan Stevens, Rick L. Division of Data Science and Learning Argonne National Laboratory LemontIL United States Frederick National Laboratory for Cancer Research Cancer Data Science Initiatives Cancer Research Technology Program FrederickMD United States Department of Statistics University of Nebraska–Lincoln LincolnNE United States Department of Electrical & Computer Engineering Texas Tech University LubbockTX United States Division of Computer Computational and Statistical Sciences Los Alamos National Laboratory Los AlamosNM United States Department of Computer Science The University of Chicago ChicagoIL United States

Deep learning (DL) and machine learning (ML) models have shown promise in drug response prediction (DRP), yet their ability to generalize across datasets remains an open question, raising concerns about their real-world applicability. Due to the lack of standardized benchmarking approaches, model evaluations and comparisons often rely on inconsistent datasets and evaluation criteria, making it difficult to assess true predictive capabilities. In this work, we introduce a benchmarking framework for evaluating cross-dataset prediction generalization in DRP models. Our framework incorporates five publicly available drug screening datasets, six standardized DRP models, and a scalable workflow for systematic evaluation. To assess model generalization, we introduce a set of evaluation metrics that quantify both absolute performance (e.g., predictive accuracy across datasets) and relative performance (e.g., performance drop compared to within-dataset results), enabling a more comprehensive assessment of model transferability. Our results reveal substantial performance drops when models are tested on unseen datasets, underscoring the importance of rigorous generalization assessments. While several models demonstrate relatively strong cross-dataset generalization, no single model consistently outperforms across all datasets. Furthermore, we identify CTRPv2 as the most effective source dataset for training, yielding higher generalization scores across target datasets. By sharing this standardized evaluation framework with the community, our study aims to establish a rigorous foundation for model comparison, and accelerate the development of robust DRP models for real-world applications. © 2025, CC BY.

关键词： Prediction models

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Post-Operative Recovery Process Assessment of Total Hip Arthroplasty with Instrumented Implant

Post-Operative Recovery Process Assessment of Total Hip Arth...

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Mediterranean Electrotechnical Conference (MELECON)

作者： Carlos Rodrigues Miguel Correia João Abrantes Marco Rodrigues Jurandir Nadal C-BER - Centre for Biomedical Engineering Research INESC TEC - Institute for Systems and Computer Engineering Technology and Science Porto Portugal MovLab - Laboratory of Technologies for Interactions and Interfaces CICANT - Centre for Research in Applied Communication Culture and New Technologies Lisbon Portugal Department of Electronic and Systems Federal University of Pernambuco Recife Brazil Biomedical Engineering Program Federal University of Rio de Janeiro Rio de Janeiro Brazil

ISBN: (数字)9798350387025

ISBN: (纸本)9798350387032

This study presents variability assessment of real time measurements from in-vivo internal joint loads with instrumented implant during post-operative (PO) recovery process from total hip arthroplasty on daily living gait activities. A total of 112 trials walking supported by crutches in both hands, contralateral and ipsilateral sides, walking on treadmill at constant velocities, accelerating, decelerating and free walking, were assessed from 9 different patients ranging 0.3 to 76-month PO. Variability was assessed based on standard deviation of the vertical joint load normalized to each subject body weight with this metric adequacy to monitor PO recover.

关键词： Legged locomotion Temperature measurement Force measurement Instruments Force Time series analysis Implants

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A DIRECT METHOD OF GENERATING QUADRATIC CURVILINEAR TETRAHEDRAL MESHES USING AN ADVANCING FRONT APPROACH 29

A DIRECT METHOD OF GENERATING QUADRATIC CURVILINEAR TETRAHED...

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29th International Meshing Roundtable, IMR 2021

作者： Mohammadi, Fariba Shontz, Suzanne M. Department of Mechanical Engineering Information and Telecommunication Technology Center The University of Kansas 1520 W. 15th Street LawrenceKS66045 United States Department of Electrical Engineering and Computer Science Bioengineering Program Information and Telecommunication Technology Center University of Kansas 1520 W. 15th Street LawrenceKS66045 United States

ISBN: (纸本)9781733489010

Computational modeling and simulation of real-world problems, e.g., various applications in the automotive, aerospace, and biomedical industries, often involve geometric objects which are bounded by curved surfaces. The geometric modeling of such objects can be performed via high-order meshes. Such a mesh, when paired with a high-order partial differential equation (PDE) solver, can realize more accurate solution results with a decreased number of mesh elements (in comparison to a low-order mesh). There are several types of high-order mesh generation approaches, such as direct methods, a posteriori methods, and isogeometric analysis (IGA)-based spline modeling approaches. In this paper, we propose a direct, high-order, curvilinear tetrahedral mesh generation method using an advancing front technique. After generating the mesh, we apply mesh optimization to improve the quality and to take advantage of the degrees of freedom available in the initially straight-sided quadratic elements. Our method aims to generate high-quality tetrahedral mesh elements from various types of boundary representations including the cases where no computer-aided design files are available. Such a method is essential, for example, for generating meshes for various biomedical models where the boundary representation is obtained from medical images instead of CAD files. We present several numerical examples of second-order tetrahedral meshes generated using our method based on input triangular surface meshes. © 2021 held by the authors of the individual papers.

关键词： Mesh generation

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Critical Factors of Immersive Learning in Higher Education: A Systematic Literature Review

Critical Factors of Immersive Learning in Higher Education: ...

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International Conference on ICT For Smart Society (ICISS)

作者： Sunardi Meyliana Arief Ramadhan Yusep Rosmansyah Computer Science Department BINUS Graduate Program Doctor of Computer Science Bina Nusantara University Jakarta Indonesia Information System Departement School of information system Bina Nusantara University Jakarta Indonesia School of Computing Telkom University Bandung Indonesia School of electrical engineering and informatics Bandung Institute of Technology Bandung Indonesia

Immersive learning has gained significant attention with the rising trend of spatial computing, particularly in the after-pandemic era. Numerous research has explored the potential of immersive learning in higher education, primarily on the educational sector. However, prior research has frequently focused too narrowly on the effects of technology and neglected to address the crucial element influencing successful immersive learning in higher education. This study seeks to pinpoint the crucial element contributing to the development of immersive learning experiences. The methodology uses a systematic literature review (SLR) from 2018 up to 2023 to investigate the critical factors of immersive Learning in Higher Education. From the 728 papers initially retrieved, 274 were considered potential candidates, and ultimately, 86 articles were selected based on their relevance to the research question. The results reveal that the critical factors include learning design, technology, immersion, engagement, interactivity, and usability. Academic interests will benefit from this SLR's consequences as institutions create models for designing suitable immersive learning, especially within the context of higher education.

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High-Order Cardiomyopathy Human Heart Model and Mesh Generation

High-Order Cardiomyopathy Human Heart Model and Mesh Generat...

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2021 Computing in Cardiology, CinC 2021

作者： Mohammadi, Fariba Shontz, Suzanne M Linte, Cristian A Department of Mechanical Engineering University of Kansas LawrenceKS United States Department of Electrical Engineering and Computer Science University of Kansas LawrenceKS United States Bioengineering Program University of Kansas LawrenceKS United States Information and Telecommunication Technology Center University of Kansas LawrenceKS United States Chester F Carlson Center for Imaging Science Rochester Institute of Technology RochesterNY United States Department of Biomedical Engineering Rochester Institute of Technology RochesterNY United States

ISBN: (纸本)9781665479165

Faithful, accurate, and successful cardiac biomechanics and electrophysiological simulations require patient-specific geometric models of the heart. Since the cardiac geometry consists of highly-curved boundaries, the use of high-order meshes with curved elements would ensure that the various curves and features present in the cardiac geometry are well-captured and preserved in the corresponding mesh. Most other existing mesh generation techniques require computer-aided design files to represent the geometric boundary, which are often not available for biomedical applications. Unlike such methods, our technique takes a high-order surface mesh, generated from patient medical images, as input and generates a high-order volume mesh directly from the curved surface mesh. In this paper, we use our direct high-order curvilinear tetrahedral mesh generation method [1] to generate several second-order cardiac meshes. Our meshes include the left ventricle myocardia of a healthy heart and hearts with dilated and hypertrophic cardiomyopathy. We show that our high-order cardiac meshes do not contain inverted elements and are of sufficiently high quality for use in cardiac finite element simulations. © 2021 Creative Commons.

关键词： Heart

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COVID-19 Infected Lung Computed Tomography Segmentation and Supervised Classification Approach

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computers, Materials & Continua 2021年第7期68卷 391-407页

作者： Aqib Ali Wali Khan Mashwani Samreen Naeem Muhammad Irfan Uddin Wiyada Kumam Poom Kumam Hussam Alrabaiah Farrukh Jamal Christophe Chesneau Department of Computer Science Concordia College BahawalpurBahawalpur63100Pakistan Department of Computer Science&IT Glim Institute of Modern StudiesBahawalpur63100Pakistan Institute of Numerical Sciences Kohat University of Science&TechnologyKohat26000Pakistan Institute of Computing Kohat University of Science and TechnologyKohat26000Pakistan Program in Applied Statistics Department of Mathematics and Computer ScienceFaculty of Science and TechnologyRajamangala University of Technology ThanyaburiThanyaburi12110Thailand Departments of Mathematics Faculty of ScienceCenter of Excellence in Theoretical and Computational Science(TaCS-CoE)&KMUTT Fixed Point Research LaboratoryRoom SCL 802 Fixed Point LaboratoryScience Laboratory BuildingKing Mongkut’s University of Technology Thonburi(KMUTT)Bangkok10140Thailand Department of Medical Research China Medical University HospitalTaichung40402Taiwan College of Engineering Al Ain UniversityAl Ain64141United Arab Emirates Department of Mathematics Tafila Technical UniversityTafila66110Jordan Department of Statistics The Islamia University of BahawalpurBahawalpur63100Pakistan 11Department of MathematicsUniversitéde CaenLMNOCaen14032France

The purpose of this research is the segmentation of lungs computed tomography(CT)scan for the diagnosis of COVID-19 by using machine learning *** dataset contains data from patients who are prone to the *** contains three types of lungs CT images(Normal,Pneumonia,and COVID-19)collected from two different sources;the first one is the Radiology department of Nishtar Hospital Multan and Civil Hospital Bahawalpur,Pakistan,and the second one is a publicly free available medical imaging database known as *** the preprocessing,a novel fuzzy c-mean automated region-growing segmentation approach is deployed to take an automated region of interest(ROIs)and acquire 52 hybrid statistical features for each ***,12 optimized statistical features are selected via the chi-square feature reduction *** the classification,five machine learning classifiers named as deep learning J4,multilayer perceptron,support vector machine,random forest,and naive Bayes are deployed to optimize the hybrid statistical features *** is observed that the deep learning J4 has promising results(sensitivity and specificity:0.987;accuracy:98.67%)among all the deployed *** a complementary study,a statistical work is devoted to the use of a new statistical model to fit the main datasets of COVID-19 collected in Pakistan.

关键词： COVID-19 machine learning fuzzy c-mean deep learning J4

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