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BigNeuron: a resource to benchmark and predict performance of algorithms for automated tracing of neurons in light microscopy datasets

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Nature methods 2023年第6期20卷 824-835页

作者： Linus Manubens-Gil Zhi Zhou Hanbo Chen Arvind Ramanathan Xiaoxiao Liu Yufeng Liu Alessandro Bria Todd Gillette Zongcai Ruan Jian Yang Miroslav Radojević Ting Zhao Li Cheng Lei Qu Siqi Liu Kristofer E Bouchard Lin Gu Weidong Cai Shuiwang Ji Badrinath Roysam Ching-Wei Wang Hongchuan Yu Amos Sironi Daniel Maxim Iascone Jie Zhou Erhan Bas Eduardo Conde-Sousa Paulo Aguiar Xiang Li Yujie Li Sumit Nanda Yuan Wang Leila Muresan Pascal Fua Bing Ye Hai-Yan He Jochen F Staiger Manuel Peter Daniel N Cox Michel Simonneau Marcel Oberlaender Gregory Jefferis Kei Ito Paloma Gonzalez-Bellido Jinhyun Kim Edwin Rubel Hollis T Cline Hongkui Zeng Aljoscha Nern Ann-Shyn Chiang Jianhua Yao Jane Roskams Rick Livesey Janine Stevens Tianming Liu Chinh Dang Yike Guo Ning Zhong Georgia Tourassi Sean Hill Michael Hawrylycz Christof Koch Erik Meijering Giorgio A Ascoli Hanchuan Peng Institute for Brain and Intelligence Southeast University Nanjing China. Microsoft Corporation Redmond WA USA. Tencent AI Lab Bellevue WA USA. Computing Environment and Life Sciences Directorate Argonne National Laboratory Lemont IL USA. Kaya Medical Seattle WA USA. University of Cassino and Southern Lazio Cassino Italy. Center for Neural Informatics Structures and Plasticity Krasnow Institute for Advanced Study George Mason University Fairfax VA USA. Faculty of Information Technology Beijing University of Technology Beijing China. Beijing International Collaboration Base on Brain Informatics and Wisdom Services Beijing China. Nuctech Netherlands Rotterdam the Netherlands. Janelia Research Campus Howard Hughes Medical Institute Ashburn VA USA. Department of Electrical and Computer Engineering University of Alberta Edmonton Alberta Canada. Ministry of Education Key Laboratory of Intelligent Computation and Signal Processing Anhui University Hefei China. Paige AI New York NY USA. Scientific Data Division and Biological Systems and Engineering Division Lawrence Berkeley National Lab Berkeley CA USA. Helen Wills Neuroscience Institute and Redwood Center for Theoretical Neuroscience UC Berkeley Berkeley CA USA. RIKEN AIP Tokyo Japan. Research Center for Advanced Science and Technology (RCAST) The University of Tokyo Tokyo Japan. School of Computer Science University of Sydney Sydney New South Wales Australia. Texas A&M University College Station TX USA. Cullen College of Engineering University of Houston Houston TX USA. Graduate Institute of Biomedical Engineering National Taiwan University of Science and Technology Taipei Taiwan. National Centre for Computer Animation Bournemouth University Poole UK. PROPHESEE Paris France. Department of Neuroscience Columbia University New York NY USA. Mortimer B. Zuckerman Mind Brain Behavior Institute Columbia University New York NY USA. Department of Computer Science Northern Illinois Universit

BigNeuron is an open community bench-testing platform with the goal of setting open standards for accurate and fast automatic neuron tracing. We gathered a diverse set of image volumes across several species that is representative of the data obtained in many neuroscience laboratories interested in neuron tracing. Here, we report generated gold standard manual annotations for a subset of the available imaging datasets and quantified tracing quality for 35 automatic tracing algorithms. The goal of generating such a hand-curated diverse dataset is to advance the development of tracing algorithms and enable generalizable benchmarking. Together with image quality features, we pooled the data in an interactive web application that enables users and developers to perform principal component analysis, t-distributed stochastic neighbor embedding, correlation and clustering, visualization of imaging and tracing data, and benchmarking of automatic tracing algorithms in user-defined data subsets. The image quality metrics explain most of the variance in the data, followed by neuromorphological features related to neuron size. We observed that diverse algorithms can provide complementary information to obtain accurate results and developed a method to iteratively combine methods and generate consensus reconstructions. The consensus trees obtained provide estimates of the neuron structure ground truth that typically outperform single algorithms in noisy datasets. However, specific algorithms may outperform the consensus tree strategy in specific imaging conditions. Finally, to aid users in predicting the most accurate automatic tracing results without manual annotations for comparison, we used support vector machine regression to predict reconstruction quality given an image volume and a set of automatic tracings.

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A Diverse Biases Non-negative Latent Factorization of Tensors Model for Dynamic Network Link Prediction

A Diverse Biases Non-negative Latent Factorization of Tensor...

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2020 IEEE International Conference on Networking, Sensing and Control, ICNSC 2020

作者： Wu, Xuke Gou, Hang Wu, Hao Wang, Juan Chen, Minzhi Lai, Siyu Computer School China West Normal University Nanchong Sichuan637002 China Chongqing Engineering Research Center of Big Data Application for Smart Cities Chongqing Key Laboratory of Big Data and Intelligent Computing Chongqing Institute of Green and Intelligent Technology Chinese Academy of Sciences Chongqing400714 China University of Chinese Academy of Sciences Beijing100049 China Department of Medical Imaging North Sichuan Medical College Nanchong Sichuan637000 China

ISBN: (纸本)9781728168531

Dynamic networks vary over time, making it vital to capture networks temporal patterns for predicting missing links with high accuracy. A biased non-negative latent factorization of tensors (BNLFT) model is very effective in extracting such patterns from dynamic data. However, a BNLFT model only integrates single bias, which cannot adequately represents the volatility of the dynamic data. To address this issue, this paper presents a Diverse Biases Non-negative Latent Factorization of Tensors (DBNT) model for accurate prediction of missing links in dynamic networks. Meanwhile, for further prediction accuracy improvement, the preprocessing bias is integrated into the DBNT model. Empirical studies on two dynamic networks datasets from real applications show that compared with state of the art predictors, a DBNT model achieves higher prediction accuracy. © 2020 IEEE.

关键词： Factorization

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FlowDesign: Improved design of antibody CDRs through flow matching and better prior distributions

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Cell systems 2025年第6期16卷 101270页

作者： Jun Wu Xiangzhe Kong Ningguan Sun Jing Wei Sisi Shan Fuli Feng Feng Wu Jian Peng Linqi Zhang Yang Liu Jianzhu Ma University of Science and Technology of China Hefei China. Department of Computer Science and Technology Tsinghua University Beijing China Institute for AI Industry Research Tsinghua University Beijing China. Helixon US Inc. Champaign Illinois USA. Comprehensive AIDS Research Center Center for Infection Biology Pandemic Research Alliance School of Basic Medical Sciences Tsinghua Medicine Tsinghua University Beijing China. Institute for AI Industry Research Tsinghua University Beijing China. Electronic address: liuyang2011@***. Institute for AI Industry Research Tsinghua University Beijing China Department of Electronic Engineering Tsinghua University Beijing China. Electronic address: majianzhu@***.

Designing antibodies with desired binding specificity and affinity is essential for pharmaceutical research. While diffusion-based models have advanced the co-design of the complementarity-determining region (CDR) sequences and structures, challenges remain, including non-informative priors, incompatibility with discrete amino acid types, and impractical computational costs in large-scale sampling. To address these, we propose FlowDesign, a sequence-structure co-design approach via flow matching, offering (1) flexible prior selection, (2) direct matching of discrete distributions, and (3) enhanced efficiency for large-scale sampling. By leveraging various priors, data-driven structural models proved the most informative. FlowDesign outperformed baselines in amino acid recovery (AAR), root-mean-square deviation (RMSD), and Rosetta energy. We also applied FlowDesign to design antibodies targeting the HIV-1 receptor CD4. FlowDesign yielded antibodies with improved binding affinity and neutralizing potency compared with the antibody ibalizumab across multiple HIV mutants, validated by biolayer interferometry (BLI) and pseudovirus neutralization. This highlights FlowDesign's potential in antibody and protein design. A record of this paper's transparent peer review process is included in the supplemental information.

关键词： HIV antibody antibody design flow matching structure-based drug design

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Machine learning based calculation of refractive index of polyethylene glycol polymer

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Results in Chemistry 2025年 16卷

作者： Walid Abdelfattah Munthar Kadhim Abosaoda Hardik Doshi H.S. Shreenidhi Manoranjan Parhi Devendra Singh Prabhjot Singh Bilakshan Purohit Kamal Kant Joshi Ahmad Abumalek Department of Mathematics College of Science Northern Border University Arar Saudi Arabia College of pharmacy the Islamic University Najaf Iraq College of pharmacy The Islamic University of Al Diwaniyah Al Diwaniyah Iraq Marwadi Universitly Research Center Department of Computer Engineering Faculty of Engineering & Technology Marwadi University Rajkot Gujarat India Assistant Professor Department of Computer Science and Engineering School of Engineering and Technology JAIN (Deemed to be University) Bangalore Karnataka India Department of Computer Science and Engineering Siksha 'O' Anusandhan (Deemed to be University) Bhubaneswar Odisha 751030 India Department of Computer science & Engineering Uttaranchal Institute of Technology Uttaranchal University Dehradun 248007 Uttarakhand India Department of Computer Application Chandigarh Engineering College Chandigarh Group of Colleges-Jhanjeri Mohali 140307 Punjab India Centre for Research Impact & Outcome Chitkara University Institute of Engineering and Technology Chitkara University Rajpura 140401 Punjab India Department of Allied Science Graphic Era Hill University Dehradun India Graphic Era Deemed to be University Dehradun Uttarakhand India Faculty of Engineering Balkh University Balkh Afghanistan

This study develops advanced machine learning algorithms to accurately predict the refractive index of polyethylene glycol (PEG) polymers using temperature and molecular weight as key input variables. A databank comprising 99 experimental measurements were utilized to train and assess multiple algorithms, including Extra Trees, Random Forests, Decision Trees, Ensemble Learning, AdaBoost, K-Nearest Neighbors, Multilayer Perceptron Artificial Neural Networks (MLP-ANN), Linear Regression, and Elastic Net. The dataset demonstrated a strong correlation between molecular weight and refractive index ( r = 0.64), and an inverse correlation with temperature ( r = −0.72). Model performance was assessed using R 2 , MSE, and AARE%, revealing that MLP-ANN, Linear Regression, and Elastic Net models yielded the highest accuracy on the testing dataset. Furthermore, SHAP analysis identified molecular weight as the dominant factor influencing refractive index predictions. The proposed approach significantly reduces the need for experimental measurements and offers a reliable, time-efficient solution for estimating the optical behavior of PEG polymers under varying conditions.

关键词： Machine learning Artificial intelligence Polyethylene glycol Refractive index Outlier detection SHAP analysis

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VSRQ: Quantitative Assessment Method for Safety Risk of Vehicle Intelligent Connected System

arXiv

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arXiv 2023年

作者： Zhang, Tian Guan, Wenshan Miao, Hao Huang, Xiujie Liu, Zhiquan Wang, Chaonan Guan, Quanlong Fang, Liangda Duan, Zhifei Department of Cyberspace Security College of Information Science and Technology Jinan University Guangzhou511486 China Department of Computer Science College of Information Science and Technology Jinan University Guangzhou510632 China College of Information Science and Technology Jinan University Guangdong Institution of Smart Education Jinan University Guangzhou510632 China College of Cyber Security Jinan University Guangzhou510632 China Guangdong Gene Data Processing and Analysis Engineering Research Center China Pazhou Laboratory Guangzhou510330 China Guangxi Key Laboratory of Trusted Software Guilin University of Electronic Technology Guilin541004 China Guangzhou XPeng Motors Technology Co. Ltd No.8 Songgang Road Changxing Street Cencun Tianhe District Guangzhou China

The field of intelligent connected in modern vehicles continues to expand, and the functions of vehicles become more and more complex with the development of the times. This has also led to an increasing number of vehicle vulnerabilities and many safety issues. Therefore, it is particularly important to identify high-risk vehicle intelligent connected systems, because it can inform security personnel which systems are most vulnerable to attacks, allowing them to conduct more thorough inspections and tests. In this paper, we develop a new model for vehicle risk assessment by combining I-FAHP with FCA clustering: VSRQ model. We extract important indicators related to vehicle safety, use fuzzy cluster analys (FCA) combined with fuzzy analytic hierarchy process (FAHP) to mine the vulnerable components of the vehicle intelligent connected system, and conduct priority testing on vulnerable components to reduce risks and ensure vehicle safety. We evaluate the model on OpenPilot and experimentally demonstrate the effectiveness of the VSRQ model in identifying the safety of vehicle intelligent connected systems. The experiment fully complies with ISO 26262 and ISO/SAE 21434 standards, and our model has a higher accuracy rate than other models. These results provide a promising new research direction for predicting the security risks of vehicle intelligent connected systems and provide typical application tasks for VSRQ. The experimental results show that the accuracy rate is 94.36%, and the recall rate is 73.43%, which is at least 14.63% higher than all other known indicators. Copyright © 2023, The Authors. All rights reserved.

关键词： Vehicle safety

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Towards 6G wireless communication networks:vision, enabling technologies, and new paradigm shifts

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science China(Information sciences) 2021年第1期64卷 5-78页

作者： Xiaohu YOU Cheng-Xiang WANG Jie HUANG Xiqi GAO Zaichen ZHANG Mao WANG Yongming HUANG Chuan ZHANG Yanxiang JIANG Jiaheng WANG Min ZHU Bin SHENG Dongming WANG Zhiwen PAN Pengcheng ZHU Yang YANG Zening LIU Ping ZHANG Xiaofeng TAO Shaoqian LI Zhi CHEN Xinying MA Chih-Lin I Shuangfeng HAN Ke LI Chengkang PAN Zhimin ZHENG Lajos HANZO Xuemin (Sherman) SHEN Yingjie Jay GUO Zhiguo DING Harald HAAS Wen TONG Peiying ZHU Ganghua YANG Jun WANG Erik G.LARSSON Hien Quoc NGO Wei HONG Haiming WANG Debin HOU Jixin CHEN Zhe CHEN Zhangcheng HAO Geoffrey Ye LI Rahim TAFAZOLLI Yue GAO H.Vincent POOR Gerhard P.FETTWEIS Ying-Chang LIANG National Mobile Communications Research Laboratory School of Information Science and EngineeringSoutheast University Purple Mountain Laboratories Shanghai Institute of Fog Computing Technology (SHIFT) ShanghaiTech University Research Center for Network Communication Peng Cheng Laboratory State Key Laboratory of Networking and Switching Technology Beijing University of Posts and Telecommunications National Engineering Laboratory for Mobile Network Technologies Beijing University of Posts and Telecommunications National Key Laboratory of Science and Technology on Communications University of Electronic Science and Technology of China (UESTC) China Mobile Research Institute School of Electronics and Computer Science University of Southampton Department of Electrical and Computer Engineering University of Waterloo Global Big Data Technologies Centre (GBDTC) University of Technology Sydney School of Electrical and Electronic Engineering The University of Manchester LiFi Research and Development Centre Institute for Digital CommunicationsSchool of EngineeringThe University of Edinburgh Huawei Technologies Canada Co. Ltd. Huawei Technologies Department of Electrical Engineering (ISY) Link?ping University Institute of Electronics Communications & Information Technology (ECIT)Queen's University Belfast State Key Laboratory of Millimeter Waves School of Information Science and EngineeringSoutheast University School of Electrical and Computer Engineering Georgia Institute of Technology 5G Innovation Centre University of Surrey Princeton University Vodafone Chair Mobile Communications Systems Technische Universit?t Dresden Center for Intelligent Networking and Communications (CINC) University of Electronic Science and Technology of China (UESTC)

The fifth generation(5G) wireless communication networks are being deployed worldwide from 2020 and more capabilities are in the process of being standardized, such as mass connectivity, ultra-reliability,and guaranteed low latency. However, 5G will not meet all requirements of the future in 2030 and beyond, and sixth generation(6G) wireless communication networks are expected to provide global coverage, enhanced spectral/energy/cost efficiency, better intelligence level and security, etc. To meet these requirements, 6G networks will rely on new enabling technologies, i.e., air interface and transmission technologies and novel network architecture, such as waveform design, multiple access, channel coding schemes, multi-antenna technologies, network slicing, cell-free architecture, and cloud/fog/edge computing. Our vision on 6G is that it will have four new paradigm shifts. First, to satisfy the requirement of global coverage, 6G will not be limited to terrestrial communication networks, which will need to be complemented with non-terrestrial networks such as satellite and unmanned aerial vehicle(UAV) communication networks, thus achieving a space-airground-sea integrated communication network. Second, all spectra will be fully explored to further increase data rates and connection density, including the sub-6GHz, millimeter wave(mmWave), terahertz(THz),and optical frequency bands. Third, facing the big datasets generated by the use of extremely heterogeneous networks, diverse communication scenarios, large numbers of antennas, wide bandwidths, and new service requirements, 6G networks will enable a new range of smart applications with the aid of artificial intelligence(ai) and big data technologies. Fourth, network security will have to be strengthened when developing 6G networks. This article provides a comprehensive survey of recent advances and future trends in these four aspects. Clearly, 6G with additional technical requirements beyond those of 5G will enable f

关键词： 6G vision network architecture air interface and transmission technologies space-air-ground-sea integrated network all spectra artificial intelligence network security

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Progressive Dual Priori Network for Generalized Breast Tumor Segmentation

arXiv

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arXiv 2023年

作者： Wang, Li Wang, Lihui Kuai, Zixiang Tang, Lei Ou, Yingfeng Ye, Chen Zhu, Yuemin Wu, Min Shi, Tianliang Engineering Research Center of Text Computing & Cognitive Intelligence Ministry of Education Key Laboratory of Intelligent Medical Image Analysis and Precise Diagnosis of Guizhou Province State Key Laboratory of Public Big Data College of Computer Science and Technology Guizhou University Guiyang550025 China Imaging Center Harbin Medical University Cancer Hospital Harbin150081 China Radiology Department Guizhou Provincial People’s Hospital Guiyang550002 China Radiology Department Tongren People’s Hospital Tongren554300 China Univ Lyon INSA Lyon CNRS Inserm CREATIS UMR 5220 U1206 LyonF-69621 France

To promote the generalization ability of breast tumor segmentation models, as well as to improve the segmentation performance for breast tumors with smaller size, low-contrast and irregular shape, we propose a progressive dual priori network (PDPNet) to segment breast tumors from dynamic enhanced magnetic resonance images (DCE-MRI) acquired at different centers. The PDPNet first cropped tumor regions with a coarse-segmentation based localization module, then the breast tumor mask was progressively refined by using the weak semantic priori and cross-scale correlation prior knowledge. To validate the effectiveness of PDPNet, we compared it with several state-of-the-art methods on multi-center datasets. The results showed that, comparing against the suboptimal method, the DSC and HD95 of PDPNet were improved at least by 5.13% and 7.58% respectively on multi-center test sets. In addition, through ablations, we demonstrated that the proposed localization module can decrease the influence of normal tissues and therefore improve the generalization ability of the model. The weak semantic priors allow focusing on tumor regions to avoid missing small tumors and low-contrast tumors. The cross-scale correlation priors are beneficial for promoting the shape-aware ability for irregular tumors. Thus integrating them in a unified framework improved the multicenter breast tumor segmentation performance. The source code and open data can be accessed at https://github. com/wangli100209/PDPNet. Copyright © 2023, The Authors. All rights reserved.

关键词： Magnetic resonance

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A Reliable Method to Estimate the Bispectral Index Value Using a Single Frontal EEG Channel for Intra and Inter Subject Variability

A Reliable Method to Estimate the Bispectral Index Value Usi...

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IEEE International Workshop on Medical Measurement and applications (MEMEA)

作者： Mohammad Shahbakhti Matin Beiramvand Roza Krycinska Erfan Nasiri Wei Chen Jordi Solé-Casals Michal Wierzchon Anna Broniec-Wójcik Piotr Augustyniak Vaidotas Marozas Biomedical Engineering Institute Kaunas University of Technology Kaunas Lithuania Faculty of Information Technology and Communication Tampere University Tempere Finland Doctoral School in Medical and Health Sciences Jagiellonian University Medical College Krakow Poland Department of Interdisciplinary Intensive Care Jagiellonian University Collegium Medicum Krakow Poland Faculty of Statistics Mathematics and Computer Allameh Tabataba’i University Tehran Iran Center for Intelligent Medical Electronics School of Information Science and Technology Fudan University Shanghai China Data and Signal Processing Research Group University of Vic-Central University of Catalonia Vic Spain Institute of Psychology Jagiellonian University Krakow Poland Department of Biocybernetics and Biomedical Engineering AGH University of Science and Technology Krakow Poland

Objective: Monitoring the depth of anesthesia (DoA) plays an important role for administering the drug injection during a surgery, i.e., preventing undesired awareness and inordinate anesthetic depth. Although the bispectral index (BIS) monitor is the golden standard system for the DoA monitoring, it is still not affordable for the developing countries. Alternatively, a low-cost electroencephalogram (EEG) headband can be used. The objective of this paper is to present a new algorithm for estimating the BIS values using a single frontal EEG channel. Method: In the first step, the EEG signal is filtered for the elimination of artifacts and is split into its sub-bands. In the second step, several linear and nonlinear features are extracted from each sub-band and fed to a random forest regression model in order to estimate the BIS. The performance of the proposed algorithm is assessed using EEG data recorded from twenty-four subjects during the general anesthesia and is validated in terms of correlation coefficient (CC) and absolute error (AE) between the reference and estimated BIS values. Results: The proposed algorithm achieved the mean CC of 0.83 and AE of 6.5 for intra subject variability and mean CC of 0.87 and AE of 5.5 for inter subject variability. Significance: Given the similar results for both intra and inter subject variability, the proposed algorithm has the potential to be used in the real-world scenario.

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Multi-phase liver tumor segmentation with spatial aggregation and uncertain region inpainting

arXiv

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arXiv 2021年

作者： Zhang, Yue Peng, Chengtao Peng, Liying Huang, Huimin Tong, Ruofeng Lin, Lanfen Li, Jingsong Chen, Yen-Wei Chen, Qingqing Hu, Hongjie Peng, Zhiyi College of Computer Science and Technology Zhejiang University Hangzhou China Department of Electronic Engineering and Information Science University of Science and Technology of China Hefei China Research Center for Healthcare Data Science Zhejiang Lab Hangzhou China College of Information Science and Engineering Ritsumeikan University Kusatsu Japan Department of Radiology Sir Run Run Shaw Hospital Hangzhou China Department of Radiology The First Affiliated Hospital College of Medicine Zhejiang University Hangzhou China

Multi-phase computed tomography (CT) images provide crucial complementary information for accurate liver tumor segmentation (LiTS). State-of-the-art multi-phase LiTS methods usually fused cross-phase features through phase-weighted summation or channel-attention based concatenation. However, these methods ignored the spatial (pixel-wise) relationships between different phases, hence leading to insufficient feature integration. In addition, the performance of existing methods remains subject to the uncertainty in segmentation, which is particularly acute in tumor boundary regions. In this work, we propose a novel LiTS method to adequately aggregate multi-phase information and refine uncertain region segmentation. To this end, we introduce a spatial aggregation module (SAM), which encourages per-pixel interactions between different phases, to make full use of cross-phase information. Moreover, we devise an uncertain region inpainting module (URIM) to refine uncertain pixels using neighboring discriminative features. Experiments on an in-house multi-phase CT dataset of focal liver lesions (MPCT-FLLs) demonstrate that our method achieves promising liver tumor segmentation and outperforms state-of-the-arts. Copyright © 2021, The Authors. All rights reserved.

关键词： Pixels

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Multidisciplinary Consensus Prostate Contours on Magnetic Resonance Imaging: Educational Atlas and Reference Standard for Artificial Intelligence Benchmarking

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International Journal of Radiation Oncology Biology Physics 2025年

作者： Song, Yuze Dornisch, Anna M. Dess, Robert T. Margolis, Daniel J.A. Weinberg, Eric P. Barrett, Tristan Cornell, Mariel Fan, Richard E. Harisinghani, Mukesh Kamran, Sophia C. Lee, Jeong Hoon Li, Cynthia Xinran Liss, Michael A. Rusu, Mirabela Santos, Jason Sonn, Geoffrey A. Vidic, Igor Woolen, Sean A. Dale, Anders M. Seibert, Tyler M. Department of Radiation Medicine and Applied Sciences University of California San Diego La JollaCalifornia United States Department of Electrical and Computer Engineering University of California San Diego La JollaCalifornia United States Department of Radiation Oncology University of Michigan Ann ArborMI United States Department of Radiology Cornell University IthacaNew York United States Department of Clinical Imaging Sciences University of Rochester Medical Center RochesterNew York United States Department of Radiology University of Cambridge United Kingdom Cambridge United Kingdom Radformation New YorkNew York United States Department of Urology Stanford School of Medicine Palo AltoCalifornia United States Department of Radiology Massachusetts General Hospital BostonMassachusetts United States Department of Radiation Oncology Massachusetts General Hospital BostonMassachusetts United States Department of Radiology Stanford School of Medicine Palo AltoCalifornia United States Institute for Computational and Mathematical Engineering Stanford University Palo AltoCalifornia United States Department of Urology University of Texas Health Sciences Center San Antonio San AntonioTexas United States Department of Biomedical Data Science Stanford University Palo AltoCalifornia United States Quibim New YorkNew York United States Cortechs.ai San DiegoCalifornia United States Department of Radiology and Biomedical Imaging University of California San Francisco San FranciscoCalifornia United States Department of Radiology University of California San Diego La JollaCalifornia United States Department of Neurosciences University of California San Diego La JollaCalifornia United States Halıcıoğlu Data Science Institute University of California San Diego La JollaCalifornia United States Department of Bioengineering University of California San Diego La JollaCalifornia United States Department of Urology University of California San Diego La Jolla

Purpose: Evaluation of artificial intelligence (ai) algorithms for prostate segmentation is challenging because ground truth is lacking. We aimed to: (1) create a reference standard data set with precise prostate contours by expert consensus, and (2) evaluate various ai tools against this standard. Methods and Materials: We obtained prostate magnetic resonance imaging cases from six institutions from the Qualitative Prostate Imaging Consortium. A panel of 4 experts (2 genitourinary radiologists and 2 prostate radiation oncologists) meticulously developed consensus prostate segmentations on axial T2-weighted series. We evaluated the performance of 6 ai tools (3 commercially available and 3 academic) using Dice scores, distance from reference contour, and volume error. Results: The panel achieved consensus prostate segmentation on each slice of all 68 patient cases included in the reference data set. We present 2 patient examples to serve as contouring guides. Depending on the ai tool, median Dice scores (across patients) ranged from 0.80 to 0.94 for whole prostate segmentation. For a typical (median) patient, ai tools had a mean error over the prostate surface ranging from 1.3 to 2.4 mm. They maximally deviated 3.0 to 9.4 mm outside the prostate and 3.0 to 8.5 mm inside the prostate for a typical patient. Error in prostate volume measurement for a typical patient ranged from 4.3% to 31.4%. Conclusions: We established an expert consensus benchmark for prostate segmentation. The best-performing ai tools have typical accuracy greater than that reported for radiation oncologists using computed tomography scans (the most common clinical approach for radiation therapy planning). Physician review remains essential to detect occasional major errors. © 2025 The Authors

关键词： Volume measurement

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