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Drug-Target Interactions Prediction Based on Signed Heterogeneous Graph Neural Networks

Chinese Journal of Electronics 2024年第1期33卷 231-244页

作者： Ming CHEN Yajian JIANG Xiujuan LEI Yi PAN Chunyan JI Wei JIANG College of Information Science and Engineering Hunan Normal University School of Computer Science Shaanxi Normal University Faculty of Computer Science and Control Engineering Shenzhen Institute of Advanced TechnologyChinese Academy of Sciences Computer Science Department BNU-HKBU United International College

Drug-target interactions(DTIs) prediction plays an important role in the process of drug *** computational methods treat it as a binary prediction problem, determining whether there are connections between drugs and targets while ignoring relational types information. Considering the positive or negative effects of DTIs will facilitate the study on comprehensive mechanisms of multiple drugs on a common target, in this work, we model DTIs on signed heterogeneous networks, through categorizing interaction patterns of DTIs and additionally extracting interactions within drug pairs and target protein pairs. We propose signed heterogeneous graph neural networks(SHGNNs), further put forward an end-to-end framework for signed DTIs prediction, called SHGNN-DTI,which not only adapts to signed bipartite networks, but also could naturally incorporate auxiliary information from drug-drug interactions(DDIs) and protein-protein interactions(PPIs). For the framework, we solve the message passing and aggregation problem on signed DTI networks, and consider different training modes on the whole networks consisting of DTIs, DDIs and PPIs. Experiments are conducted on two datasets extracted from Drug Bank and related databases, under different settings of initial inputs, embedding dimensions and training modes. The prediction results show excellent performance in terms of metric indicators, and the feasibility is further verified by the case study with two drugs on breast cancer.

关键词： Drug-target interactions Signed heterogeneous network Link sign prediction Graph neural networks

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Powder spreading process monitoring of selective laser melting manufacturing by using a convolutional Takagi–Sugeno–Kang fuzzy neural network

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International Journal of Advanced Manufacturing Technology 2024年第9-10期132卷 4989-5004页

作者： Lin, Chun-Hui Lin, Cheng-Jian Wang, Shyh-Hau Department of Computer Science and Information Engineering National Cheng Kung University Tainan701 Taiwan Department of Computer Science and Information Engineering National Chin-Yi University of Technology Taichung411 Taiwan

Process monitoring plays a pivotal role in elucidating the intricate interplay among process, structure, and property in additive manufacturing production. The control of powder spreading affects not only particle adhesion but also rearrangement, both of which are indispensable constituents in the selective laser melting (SLM) process. To develop a novel monitoring process, this study proposed a convolutional Takagi–Sugeno–Kang fuzzy neural network (C-TSKFNN) to assess images with uneven powder distribution. The performance of the model was compared with that of conventional image analysis and state-of-the-art deep learning models. With its fusion layer and TSKFNN design, the C-TSKFNN model retains the distinctive characteristics of input images and minimizes expenditures through trainable parameters. The experimental results demonstrated that the average F1 score of the C-TSKFNN model achieved 97.07% and that it had the lowest standard deviation compared to state-of-the-art deep learning models. The trainable parameters were only 103,506, which is lower than those of models. Defect information was also provided locally through a model interpretation technique, facilitating the monitoring of SLM manufacturing. © The Author(s), under exclusive licence to Springer-Verlag London Ltd., part of Springer Nature 2024.

关键词： Process monitoring

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PEP: An Accurate and Efficient Pupil Detection Framework Based on Pupil Edge Points

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IEEE Sensors Journal 2025年第12期25卷 22385-22396页

作者： Zhang, Wei Liu, Yu Lv, Linfeng Wang, Xiang Li, Ziqiang Liu, Lei Li, Bin Department of Electronic Engineering and Information Science University of Science and Technology of China Hefei230026 China Carnegie Mellon University Department of Electrical and Computer Engineering Pittsburgh United States Nanjing University of Information Science and Technology School of Computer Science Nanjing China

With the rapid development of headmounted devices, eye tracking as an emerging human-computer interaction technology, has gained increasing importance. However, pupil detection, the core algorithm in eye tracking, suffered low accuracy in complex scenarios and long runtime, which limits the frame rate. This paper proposes PEP (neural network based on Pupil Edge Points), an efficient pupil detection framework that not only achieves high detection accuracy but also significantly reduces computational costs, thereby addressing the performance bottlenecks of existing methods in challenging environments. The core innovation of the PEP framework lies in its focus on detecting edge-representative points (the points at the edge of the pupil) along the pupil edge, a method more precise than traditional full-region segmentation and better suited for accurate pupil ellipse fitting. Additionally, PEP enhances the accuracy of pupil edge point predictions through two key features: (1) a loss function that includes natural ellipse prior regularization term and (2) a data augmentation strategy that randomly masks edges. We evaluated PEP against state-of-the-art (SOTA) model-based and learning-based methods across multiple datasets. The evaluation results show that PEP achieved superior overall performance regarding pupil detection rate and accuracy. Moreover, PEP’s parameter number and computational cost are 80% lower than other learning-based methods, making it highly efficient. The proposed framework is practical, scalable, and demonstrates exceptional potential for pupil detection and gaze-tracking applications. © 2001-2012 IEEE.

关键词： Virtual reality

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Early Detection of Colletotrichum Kahawae Disease in Coffee Cherry Based on computer Vision Techniques

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computer Modeling in engineering & sciences 2024年第4期139卷 759-782页

作者： Raveena Selvanarayanan Surendran Rajendran Youseef Alotaibi Department of Computer Science and Engineering Saveetha School of EngineeringSaveetha Institute of Medical and Technical ScienceChennai602105India Department of Computer Science College of Computer and Information SystemsUmm Al-Qura UniversityMakkah21955Saudi Arabia

Colletotrichum kahawae(Coffee Berry Disease)spreads through spores that can be carried by wind,rain,and insects affecting coffee plantations,and causes 80%yield losses and poor-quality coffee *** deadly disease is hard to control because wind,rain,and insects carry *** researchers utilized a deep learning system to identify CBD in coffee cherries at three growth stages and classify photographs of infected and uninfected cherries with 93%accuracy using a random forest *** the dataset is too small and noisy,the algorithm may not learn data patterns and generate accurate *** overcome the existing challenge,early detection of Colletotrichum Kahawae disease in coffee cherries requires automated processes,prompt recognition,and accurate *** proposed methodology selects CBD image datasets through four different stages for training and *** to train a model on datasets of coffee berries,with each image labeled as healthy or *** themodel is trained,SHAP algorithmto figure out which features were essential formaking predictions with the proposed *** of these characteristics were the cherry’s colour,whether it had spots or other damage,and how big the Lesions *** inception is important for classification to virtualize the relationship between the colour of the berry is correlated with the presence of *** evaluate themodel’s performance andmitigate excess fitting,a 10-fold cross-validation approach is *** involves partitioning the dataset into ten subsets,training the model on each subset,and evaluating its *** comparison to other contemporary methodologies,the model put forth achieved an accuracy of 98.56%.

关键词： computer vision coffee berry disease colletotrichum kahawae XG boost shapley additive explanations

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A Post-Stroke Rehabilitation System With Compensatory Movement Detection Using Virtual Reality and Electroencephalogram Technologies

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IEEE Access 2024年 12卷 61418-61432页

作者： Shih, Chi-Huang Lin, Pei-Jung Chen, Yen-Lin Chen, Shu-Ling National Chin-Yi University of Technology Department of Computer Science and Information Engineering Taichung411030 Taiwan Feng Chia University Department of Information Engineering and Computer Science Taichung40724 Taiwan National Taipei University of Technology Department of Computer Science and Information Engineering Taipei106344 Taiwan Hungkuang University Department of Nursing Taichung43302 Taiwan

Stroke is a leading cause of global population mortality and disability, imposing burdens on patients and caregivers, and significantly affecting the quality of life of patients. Therefore, in this study, we aimed to explore the application of virtual reality technology in physical therapy by using immersive interactive training and designing rehabilitation modes for individual and group settings. We also aimed to provide patients with stroke with a comprehensive home-based rehabilitation and treatment plan, ultimately enhancing training effectiveness. Patients can engage in home-based rehabilitation through this system and undergo functional, mirror, and constraint-induced therapies tailored to different task contents. Simultaneously, using brain-computer interface technology, an emotion analysis mechanism was designed to map the patients' brainwave signal data onto a two-dimensional space of positive-negative valence arousal;this approach can enable remote physical therapists to discern the patients' emotional states during the rehabilitation process through virtual spaces, facilitating timely adjustments to rehabilitation tasks. Moreover, to prevent compromised effectiveness owing to improper training postures leading to compensation, the system offers real-time identification and recording, promptly issuing alerts when compensation occurs. The system provides a multiuser virtual rehabilitation space, enabling timely corrections and data observations, offering patients with stroke a home-based rehabilitation program, thereby realizing a localized aging care model. © 2013 IEEE.

关键词： Virtual reality

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Vehicle Identity Anonymity Framework with Accountability for VANET Environment

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Journal of Internet Technology 2024年第2期25卷 267-280页

作者： Lo, Nai-Wei Chuang, Chi-Ying Luo, Jia-Ning Yang, Chong-Long Department of Information Management National Taiwan University of Science and Technology Taiwan Department of Computer Science and Information Engineering National Defense University Taiwan

In recent years, there has been rapid development in vehicle safety technology, with the emergence of various active safety systems including blind spot information systems, adaptive cruise control, and front collision warning systems. Simultaneously, car manufacturers and technology companies are actively exploring technologies in the realm of autonomous driving. To facilitate such applications, vehicles are required to communicate with each other, exchanging vital information such as position, speed, and acceleration. However, this exchange of information poses a potential risk of drivers’ personal data being compromised. For safety purposes, vehicles must undergo appropriate authentication before engaging in communication with other vehicles. Ensuring this authentication process maintains the anonymity of the vehicles is crucial. Yet, striking a balance between protecting vehicle anonymity and enabling vehicle identification when necessary remains a challenging issue. This paper introduces a multi-tier Vehicular Ad-Hoc Network (VANET) framework designed to uphold the conditional anonymity and traceability of vehicles. The implementation of a group signature mechanism facilitates anonymous authentication, thereby enabling the realization of conditional anonymity and traceability. Moreover, comprehensive simulations and security analyses were conducted to validate the effectiveness of the proposed framework, demonstrating its efficiency while incorporating robust safety considerations. © 2024 Taiwan Academic Network Management Committee. All rights reserved.

关键词： Vehicular ad hoc networks

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Strategies to Selecting Most Profitable Products by Price Settings

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International Journal of information Technology and Decision Making 2024年第2期23卷 885-915页

作者： Tai, Liang Kuang Chen, Arbee L.P. Department of Computer Science National Tsing Hua University Hsinchu Taiwan Department of Computer Science and Information Engineering Asia University Taichung Taiwan

For a company, it is important to know which products to launch to the market that may get the maximal profit. To achieve this goal, companies not only need to consider these products' features, but also need to analyze how customers make their purchase decisions. For most customers, the price of a product is the most important purchase factor. If the price of a product can be adjusted, the purchase decision of a customer may change. With different price settings, we can speculate on the expected number of customers and the profit of the products. Motivated by this, we want to find the most profitable products among the candidates for the company. A distance-based adoption model can be used to evaluate the expected customers for products at different prices. The computational cost is high in two parts. One is the computational cost of obtaining the most profitable information on each set of candidate products. Another part is that many candidate product combinations need to be calculated. To tackle the computation problem, we propose two strategies. One is to avoid considering all possible price settings. The other is to avoid processing all possible subsets of the candidate products. Experimental results reveal the efficiency of our strategies. © 2024 World Scientific. All rights reserved.

关键词： Profitability

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DGC-TnT: Enhancing Point Cloud Object Classification by Dynamic Graph Convolutions with Transformer in Transformer

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IEEE Access 2024年 12卷 111924-111931页

作者： Lin, Chien-Chou Chen, Po-Yu National Yunlin University of Science and Technology Department of Computer Science and Information Engineering Douliou64002 Taiwan

Recently, deep learning neural networks have been widely used in object classification. The process of object classification typically involves extracting features from the point cloud using neural networks and integrating these features into a global feature for recognizing the object. However, most existing methods perform well in global feature extraction but still fall short in capturing local details, or lack an attention mechanism to focus on informative feature signals. This paper presents DGC-TnT which combines dynamic graph convolution (DGC) structure with the Point-TnT module. Employing a two-stage TnT architecture, DGC-TnT utilizes a self-attention mechanism to deeply analyze local features derived from dynamic graph convolution, expanding their scope globally. This mechanism effectively operates between individual points and clusters of points, thereby enhancing overall object classification performance. DGC-TnT facilitates enhanced feature communication between points and point clusters within the point cloud through the Transformer module. On the ModelNet40 and ScanobjectNN datasets, DGC-TnT has a significant improvement in accuracy. © 2013 IEEE.

关键词： Three dimensional displays

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Decomposition-based hybrid methods employing statistical, machine learning, and deep learning models for crude oil price forecasting

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Neural Computing and Applications 2025年第18期37卷 12565-12610页

作者： Purohit, Sourav Kumar Panigrahi, Sibarama Department of Computer Science and Engineering Sambalpur University Institute of Information Technology Burla India Department of Computer Science and Engineering National Institute of Technology Rourkela Odisha Rourkela769008 India

Crude oil prices (COP) profoundly influence global economic stability, with fluctuations reverberating across various sectors. Accurate forecasting of COP is indispensable for governments, policymakers, and stakeholders to make well-informed decisions and effectively mitigate risks. The decomposition-based hybrid models have been showing promising COP forecasting accuracy than other time series forecasting methods. Despite this fact, no systematic study has been conducted to evaluate the true potential of different decomposition-based hybrid methods employing different forecasting models to forecast the COP. Therefore, a hybrid modeling framework is developed by combining efficient decomposition techniques, namely empirical mode decomposition (EMD), ensemble EMD (EEMD), complete EEMD with adaptive noise (CEEMDAN), and variational mode decomposition (VMD) with seven statistical models, fourteen machine learning (ML) models, and six deep learning (DL) models. Further, a systematic study is conducted on the resulting decomposition-based hybrid models to find the best hybrid model for COP forecasting. Three distinct train-test data splits are employed to ensure a reliable evaluation of the models using four performance metrics. Extensive statistical analysis is conducted to identify the optimal combination of the decomposition technique and forecasting model for precise COP prediction. The results demonstrate that the proposed decomposition-based hybrid model employing VMD and Huber Regression is statistically the best method among all alternatives to forecast monthly COP. The proposed hybrid method VMD-Huber Regression improves the root mean square error (RMSE) by 21% than CEEMDAN-ARIMA, 58.31% than EEMD-Theta, 13.18% than EMD-Random Walk, and 49.44% than VMD-TBATS hybrid methods in 60–40 Train-Test split ratio. © The Author(s), under exclusive licence to Springer-Verlag London Ltd., part of Springer Nature 2025.

关键词： Mean square error

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Improved YOLOv8n Models for Object Detection in Remote Sensing Images

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IEEE Access 2025年 13卷 97889-97900页

作者： Chen, Young-Long Hung, Kai-Chun Zhang, Jia-Yun Lin, Ling-Wei National Taichung University of Science and Technology Department of Computer Science and Information Engineering China National Taichung University of Science and Technology College of Information and Distribution Science China

In recent years, numerous efficient object detectors have emerged in computer vision. However, applying these models to remote sensing images remains challenging due to complex backgrounds, high object scale variation, and the difficulty of detecting small objects. Many existing approaches prioritize accuracy but overlook the trade-off between precision and efficiency, limiting their usability in resource-constrained environments. To address these challenges, we propose a lightweight model based on the original YOLOv8n, culminating in the Transformer with Bi-directional and Coordinate Attention-YOLOv8n (TBC-YOLO8n) model. Our approach introduces a weighted bidirectional feature pyramid network that adaptively assigns importance to different feature maps, enhancing multi-scale object detection. Additionally, we integrate transformer blocks to improve global feature representation and capture long-range dependencies, alongside a coordinate attention block before each detection head to enhance localization by incorporating spatial information. Unlike previous YOLO variants, our method optimizes feature fusion strategies and integrates advanced attention mechanisms specifically tailored for remote sensing images, effectively addressing small-object detection, large-scale variations, and complex backgrounds. Compared to the original YOLOv8n, our proposed TBC-YOLO8n model improves mAP@50 from 90.2% to 94.5%, with a slight increase in inference time from 3.0 ms to 4.0 ms. Experimental results confirm the robustness and effectiveness of our model, making it a practical choice for real-time remote sensing applications with limited computational resources. © 2013 IEEE.

关键词： Remote sensing

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