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A sparse semismooth Newton based proximal majorization-minimization algorithm for nonconvex square-root-loss regression problem

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The Journal of Machine Learning Research

The Journal of Machine Learning Research 2020年第1期21卷 9253-9290页

作者： Peipei Tang Chengjing Wang Defeng Sun Kim-Chuan Toh School of Computer and Computing Science Zhejiang University City College Hangzhou China School of Mathematics and National Engineering Laboratory of Integrated Transportation Big Data Application Technology Southwest Jiaotong University Chengdu China Department of Applied Mathematics The Hong Kong Polytechnic University Hung Hom Hong Kong Department of Mathematics and Institute of Operations Research and Analytics National University of Singapore Singapore

In this paper, we consider high-dimensional nonconvex square-root-loss regression problems and introduce a proximal majorization-minimization (PMM) algorithm for solving these problems. Our key idea for making the proposed PMM to be efficient is to develop a sparse semismooth Newton method to solve the corresponding subproblems. By using the Kurdyka-Łojasiewicz property exhibited in the underlining problems, we prove that the PMM algorithm converges to a d-stationary point. We also analyze the oracle property of the initial subproblem used in our algorithm. Extensive numerical experiments are presented to demonstrate the high efficiency of the proposed PMM algorithm.

关键词： nonconvex square-root regression problems proximal majorization-minimization semismooth Newton method

A Deep learning study on osteosarcoma detection from histological images

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arXiv 2020年

作者： Anisuzzaman, D.M. Barzekar, Hosein Tong, Ling Luo, Jake Yu, Zeyun Big Data Analytics and Visualization Laboratory Department of Computer Science University of Wisconsin-Milwaukee MilwaukeeWI53211 United States Department of Health Informatics and Administration University of Wisconsin-Milwaukee MilwaukeeWI53211 United States Department of Biomedical Engineering University of Wisconsin-Milwaukee MilwaukeeWI53211 United States

In the U.S, 5-10% of new pediatric cases of cancer are primary bone tumors. The most common type of primary malignant bone tumor is osteosarcoma. The intention of the present work is to improve the detection and diagnosis of osteosarcoma using computer-aided detection (CAD) and diagnosis (CADx). Such tools as convolutional neural networks (CNNs) can significantly decrease the surgeon’s workload and make a better prognosis of patient conditions. CNNs need to be trained on a large amount of data in order to achieve a more trustworthy performance. In this study, transfer learning techniques, pre-trained CNNs, are adapted to a public dataset on osteosarcoma histological images to detect necrotic images from non-necrotic and healthy tissues. First, the dataset was preprocessed, and different classifications are applied. Then, Transfer learning models including VGG19 and Inception V3 are used and trained on Whole Slide Images (WSI) with no patches, to improve the accuracy of the outputs. Finally, the models are applied to different classification problems, including binary and multi-class classifiers. Experimental results show that the accuracy of the VGG19 has the highest, 96%, performance amongst all binary classes and multiclass classification. Our fine-tuned model demonstrates state-of-the-art performance on detecting malignancy of Osteosarcoma based on histologic images. Copyright © 2020, The Authors. All rights reserved.

关键词： Convolutional neural networks

ON-OFF Neuromorphic ISING Machines using Fowler-Nordheim Annealers

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arXiv 2024年

作者： Chen, Zihao Xiao, Zhili Akl, Mahmoud Leugring, Johannes Olajide, Omowuyi Malik, Adil Dennler, Nik Harper, Chad Bose, Subhankar Gonzalez, Hector A. Eshraghian, Jason Pignari, Riccardo Urgese, Gianvito Andreou, Andreas G. Shankar, Sadasivan Mayr, Christian Cauwenberghs, Gert Chakrabartty, Shantanu Department of Electrical and Systems Engineering Washington University in St. Louis One Brookings Drive St. LouisMO63130 United States Department of Bioengineering University of California 9500 Gilman Dr La Jolla San DiegoCA92093 United States SpiNNcloud Systems GmbH Freibergerstr. 37 Dresden01067 Germany Department of Electrical and computer engineering Johns Hopkins University 3400 N. Charles Street BaltimoreMD21218 United States SLAC National Accelerator Laboratory 2575 Sand Hill Road Menlo ParkCA94025 United States Department of Electrical and Electronic Engineering Imperial College London Exhibition Rd LondonSW7 2AZ United Kingdom International Centre for Neuromorphic Engineering Western Sydney University Penrith Second Ave KingswoodNSW2747 Australia Department of Physics University of California Berkeley University Avenue and Oxford St BerkeleyCA94720 United States Department of Electrical and Computer Engineering University of California Santa Cruz 1156 High Street Santa CruzCA95064 United States Politecnico di Torino Address: Corso Duca degli Abruzzi 24 Torino10129 Italy Redwood Center for Theoretical Neuroscience Helen Wills Neuroscience Institute University of California Berkeley University Avenue and Oxford St BerkeleyCA94720 United States Biocomputation Group University of Hertfordshire Exhibition Rd LondonSW7 2AZ United Kingdom Materials Science and Engineering Stanford University 450 Jane Stanford Way StanfordCA94305 United States Highly-Parallel VLSI-Systems and Neuro-Microelectronics Technische Universität Dresden Mommsenstraße 12 Dresden01069 Germany Scads.AI: Center for scalable data analytics and artificial intelligence Strehlener Street 12 14 Dresden01069 Germany

We introduce NeuroSA, a neuromorphic architecture specifically designed to ensure asymptotic convergence to the ground state of an Ising problem using an annealing process that is governed by the physics of quantum mechanical tunneling using Fowler-Nordheim (FN). The core component of NeuroSA consists of a pair of asynchronous ON-OFF neurons, which effectively map classical simulated annealing (SA) dynamics onto a network of integrate-and-fire (IF) neurons. The threshold of each ON-OFF neuron pair is adaptively adjusted by an FN annealer which replicates the optimal escape mechanism and convergence of SA, particularly at low temperatures. To validate the effectiveness of our neuromorphic Ising machine, we systematically solved various benchmark MAX-CUT combinatorial optimization problems. Across multiple runs, NeuroSA consistently generates solutions that approach the state-of-the-art level with high accuracy (greater than 99%), and without any graph-specific hyperparameter tuning. For practical illustration, we present results from an implementation of NeuroSA on the SpiNNaker2 platform, highlighting the feasibility of mapping our proposed architecture onto a standard neuromorphic accelerator platform. © 2024, CC BY-NC-SA.

关键词： Simulated annealing

Redefining pandemic preparedness:Multidisciplinary insights from the CERP modelling workshop in infectious diseases,workshop report

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Infectious Disease Modelling 2024年第2期9卷 501-518页

作者： Marta C.Nunes Edward Thommes Holger Fröhlich Antoine Flahault Julien Arino Marc Baguelin Matthew biggerstaff Gaston Bizel-Bizellot Rebecca Borchering Giacomo Cacciapaglia Simon Cauchemez Alex Barbier-Chebbah Carsten Claussen Christine Choirat Monica Cojocaru Catherine Commaille-Chapus Chitin Hon Jude Kong Nicolas Lambert Katharina B.Lauer Thorsten Lehr Cédric Mahe Vincent Marechal Adel Mebarki Seyed Moghadas Rene Niehus Lulla Opatowski Francesco Parino Gery Pruvost Andreas Schuppert Rodolphe Thiébaut Andrea Thomas-Bachli Cecile Viboud Jianhong Wu Pascal Crépey Laurent Coudeville Center of Excellence in Respiratory Pathogens(CERP) Hospices Civils de Lyon(HCL)and Centre International de Recherche en Infectiologie(CIRI)Équipe SantéPubliqueÉpidémiologie etÉcologieÉvolutive des Maladies Infectieuses(PHE3ID)Inserm U1111CNRS UMR5308ENS de LyonUniversitéClaude Bernard Lyon 1LyonFrance South African Medical Research Council Vaccines&Infectious Diseases Analytics Research UnitFaculty of Health SciencesUniversity of the WitwatersrandJohannesburgSouth Africa New Products and Innovation(NPI) Sanofi Vaccines(Global)TorontoOntarioCanada Department of Mathematics and Statistics University of GuelphGuelphOntarioCanada Fraunhofer Institute for Algorithms and Scientific Computing(SCAI) Department of BioinformaticsSchloss BirlinghovenSankt AugustinGermany University of Bonn Bonn-Aachen International Center for IT(b-it)BonnGermany Institute of Global Health Faculty of MedicineUniversity of GenevaGenevaSwitzerland and Swiss School of Public HealthZürichSwitzerland Department of Mathematics University of ManitobaWinnipegManitobaCanada MRC Centre for Global Infectious Disease Analysis School of Public HealthImperial College LondonLondonUK Centre for Mathematical Modelling of Infectious Diseases Department of Infectious Disease EpidemiologyLondon School of Hygiene&Tropical MedicineLondonUK National Center for Immunization and Respiratory Diseases(NCIRD) US Centers for Disease Control and Prevention(CDC)AtlantaGAUSA Departement of Computational Biology Departement of Global HealthInstitut PasteurParisFrance Institut de Physique des Deux Infinis de Lyon(IP2I) UMR5822IN2P3/CNRSUniversitéClaude Bernard Lyon 1VilleurbanneFrance Mathematical Modelling of Infectious Diseases Unit Institut PasteurUniversitéParis CitéUMR2000 CNRSParisFrance Decision and Bayesian Computation Institut PasteurUniversitéParis CitéCNRS UMR 3571France Fraunhofer-Institute for Translational Medicine and Pharmacology HamburgGermany Institute of Global Health Faculty of MedicineUniversity of

In July 2023,the Center of Excellence in Respiratory Pathogens organized a two-day workshop on infectious diseases modelling and the lessons learnt from the Covid-19 *** report summarizes the rich discussions that occurred during the *** workshop participants discussed multisource data integration and highlighted the benefits of combining traditional surveillance with more novel data sources like mobility data,social media,and wastewater *** advancements were noted in the development of predictive models,with examples from various countries showcasing the use of machine learning and artificial intelligence in detecting and monitoring disease *** role of open collaboration between various stakeholders in modelling was stressed,advocating for the continuation of such partnerships beyond the pandemic.A major gap identified was the absence of a common international framework for data sharing,which is crucial for global pandemic ***,the workshop underscored the need for robust,adaptable modelling frameworks and the integration of different data sources and collaboration across sectors,as key elements in enhancing future pandemic response and preparedness.

关键词： Modelling Covid-19 Infectious diseases Pandemic preparedness Workshop

When crowds give you lemons: Filtering innovative ideas using a diverse-bag-of-lemons strategy

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Proceedings of the ACM on Human-computer Interaction 2018年第CSCW期2卷 1-23页

作者： Lykourentzou, Ioanna Ahmed, Faez Papastathis, Costas Sadien, Irwyn Papangelis, Konstantinos Utrecht University Netherlands University of Maryland United States University of Peloponnese Greece Research Institute of Big Data Analytics Department of Computer Science and Software Engineering Xi’an Joaoton-Liverpool University China

Following successful crowd ideation contests, organizations in search of the "next big thing" are left with hundreds of ideas. Expert-based idea filtering is lengthy and costly;therefore, crowd-based strategies are often employed. Unfortunately, these strategies typically (1) do not separate the mediocre from the excellent, and (2) direct all the attention to certain idea concepts, while others starve. We introduce DBLemons – a crowd-based idea filtering strategy that addresses these issues by (1) asking voters to identify the worst rather than the best ideas using a "bag of lemons" voting approach, and (2) by exposing voters to a wider idea spectrum, thanks to a dynamic diversity-based ranking system balancing idea quality and coverage. We compare DBLemons against two state-of-the-art idea filtering strategies in a real-world setting. Results show that DBLemons is more accurate, less time-consuming, and reduces the idea space in half while still retaining 94% of the top ideas. © 2018 Association for Computing Machinery.

关键词： Citrus fruits

Transferring knowledge distillation for multilingual social event detection

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arXiv 2021年

作者： Ren, Jiaqian Peng, Hao Jiang, Lei Wu, Jia Tong, Yongxin Wang, Lihong Bai, Xu Wang, Bo Yang, Qiang Institute of Information Engineering Chinese Academy of Sciences The School of Cyber Security University of Chinese Academy of Sciences Beijing100041 China Beijing Advanced Innovation Center for Big Data and Brain Computing Beihang University Beijing100083 China The School of Cyber Science and Technology Beihang University Beijing100083 China Institute of Information Engineering Chinese Academy of Sciences Beijing100041 China The Department of Computing Macquarie University Sydney Australia The State Key Laboratory of Software Development Environment The School of Computer Science and Engineering Beihang University Beijing100083 China The National Computer Network Emergency Response Technical Team Coordination Center of China Beijing100029 China The Department of Computer Science and Engineering Hong Kong University of Science and Technology Hong Kong AI Group WeBank Co. Ltd. China

Recently published graph neural networks (GNNs) show promising performance at social event detection tasks. However, most studies are oriented toward monolingual data in languages with abundant training samples. This has left the more common multilingual settings and lesser-spoken languages relatively unexplored. Thus, we present a GNN that incorporates cross-lingual word embeddings for detecting events in multilingual data streams. The first exploit is to make the GNN work with multilingual data. For this, we outline a construction strategy that aligns messages in different languages at both the node and semantic levels. Relationships between messages are established by merging entities that are the same but are referred to in different languages. Non-English message representations are converted into English semantic space via the cross-lingual word embeddings. The resulting message graph is then uniformly encoded by a GNN model. In special cases where a lesser-spoken language needs to be detected, a novel cross-lingual knowledge distillation framework, called CLKD, exploits prior knowledge learned from similar threads in English to make up for the paucity of annotated data. Experiments on both synthetic and real-world datasets show the framework to be highly effective at detection in both multilingual data and in languages where training samples are scarce. © 2021, CC BY.

关键词： Embeddings

Retraction notice to “Neural network-based optimization of hydrogen fuel production energy system with proton exchange electrolyzer supported nanomaterial” [Fuel 332 (2023) 125827]

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Fuel 2025年 391卷

作者： Tao Hai Kosar Hikmat Hama Aziz Jincheng Zhou Hayder A. Dhahad Kamal Sharma Sattam Fahad Almojil Abdulaziz Ibrahim Almohana Abdulrhman Fahmi Alali Teeba Ismail Kh Sadok Mehrez Anas Abdelrahman School of Computer and Information Qiannan Normal University for Nationalities Duyun Guizhou 558000 China Key Laboratory of Complex Systems and Intelligent Optimization of Guizhou Duyun Guizhou 558000 China Institute for Big Data Analytics and Artificial Intelligence (IBDAAI) Universiti Teknologi MARA Shah Alam Selangor 40450 Malaysia Department of Chemistry College of Science University of Sulaimani Qlyasan Street Kurdistan Region 46001 Iraq Department of Medical Laboratory of Science College of Health Sciences University of Human Development Sulaimaniyah Iraq Key Laboratory of Complex Systems and Intelligent Optimization of Qiannan Duyun 558000 China Mechanical Engineering Department University of Technology Baghdad Iraq Institute of Engineering and Technology GLA University Mathura Uttar Pradesh 281406 India Department of Civil Engineering College of Engineering King Saud University P.O. Box 800 Riyadh 11421 Saudi Arabia Department of Computer Engineering College of Engineering and Computer Science Lebanese French University Kurdistan Region Iraq Department of Mechanical Engineering College of Engineering at Al Kharj Prince Sattam bin Abdulaziz University 16273 Saudi Arabia Department of Mechanical Engineering University of Tunis El Manar ENIT BP 37 Le Belv’ed‘ere Tunis 1002 Tunisia Department of Chemical Engineering Faculty of Engineering & Technology Future University in Egypt New Cairo 11500 Tunisia

Generating Approximate Ground States of Molecules Using Quantum Machine Learning

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arXiv 2022年

作者： Ceroni, Jack Stetina, Torin F. Kieferová, Mária Marrero, Carlos Ortiz Arrazola, Juan Miguel Wiebe, Nathan Xanadu TorontoONM5G 2C8 Canada Department of Mathematics University of Toronto TorontoONM5S 3E1 Canada Simons Institute for the Theory of Computing BerkeleyCA94704 United States Berkeley Quantum Information and Computation Center University of California BerkeleyCA94720 United States Centre for Quantum Computation and Communication Technology Centre for Quantum Software and Information University of Technology SydneyNSW2007 Australia AI & Data Analytics Division Pacific Northwest National Laboratory RichlandWA99354 United States Department of Electrical & Computer Engineering North Carolina State University RaleighNC27607 United States Department of Computer Science University of Toronto ONM5S 1A1 Canada High Performance Computing Group Pacific Northwest National Laboratory RichlandWA99354 United States

The potential energy surface (PES) of molecules with respect to their nuclear positions is a primary tool in understanding chemical reactions from first principles. However, obtaining this information is complicated by the fact that sampling a large number of ground states over a high-dimensional PES can require a vast number of state preparations. In this work, we propose using a generative quantum machine learning model to prepare quantum states at arbitrary points on the PES. The model is trained using quantum data consisting of ground-state wavefunctions associated with different classical nuclear coordinates. Our approach uses a classical neural network to convert the nuclear coordinates of a molecule into quantum parameters of a variational quantum circuit. The model is trained using a fidelity loss function to optimize the neural network parameters. We show that gradient evaluation is efficient and numerically demonstrate our method’s ability to prepare wavefunctions on the PES of hydrogen chains, water, and beryllium hydride. In all cases, we find that a small number of training points are needed to achieve very high overlap with the groundstates in practice. From a theoretical perspective, we further prove limitations on these protocols by showing that if we were able to learn across an avoided crossing using a small number of samples, then we would be able to violate Grover’s lower bound. Additionally, we prove lower bounds on the amount of quantum data needed to learn a locally optimal neural network function using arguments from quantum Fisher information. This work further identifies that quantum chemistry can be an important use case for quantum machine learning. © 2022, CC BY.

关键词： Molecules

A Robust Ensemble Algorithm for Ischemic Stroke Lesion Segmentation: Generalizability and Clinical Utility Beyond the ISLES Challenge

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arXiv 2024年

作者： de la Rosa, Ezequiel Reyes, Mauricio Liew, Sook-Lei Hutton, Alexandre Wiest, Roland Kaesmacher, Johannes Hanning, Uta Hakim, Arsany Zubal, Richard Valenzuela, Waldo Robben, David Sima, Diana M. Anania, Vincenzo Brys, Arne Meakin, James A. Mickan, Anne Broocks, Gabriel Heitkamp, Christian Gao, Shengbo Liang, Kongming Zhang, Ziji Siddiquee, Md Mahfuzur Rahman Myronenko, Andriy Ashtari, Pooya Van Huffel, Sabine Jeong, Hyun-Su Yoon, Chi-Ho Kim, Chulhong Huo, Jiayu Ourselin, Sebastien Sparks, Rachel Clèrigues, Albert Oliver, Arnau Lladó, Xavier Chalcroft, Liam Pappas, Ioannis Bertels, Jeroen Heylen, Ewout Moreau, Juliette Hatami, Nima Frindel, Carole Qayyum, Abdul Mazher, Moona Puig, Domenec Lin, Shao-Chieh Juan, Chun-Jung Hu, Tianxi Boone, Lyndon Goubran, Maged Liu, Yi-Jui Wegener, Susanne Kofler, Florian Ezhov, Ivan Shit, Suprosanna Hernandez Petzsche, Moritz R. Menze, Bjoern Kirschke, Jan S. Wiestler, Benedikt Department of Quantitative Biomedicine University of Zurich Zurich Switzerland Department of Informatics Technical University Munich Germany Icometrix Leuven Belgium ARTORG Center for Biomedical Research University of Bern Bern Switzerland Department of Radiation Oncology University Hospital Bern University of Bern Switzerland University of Bern Bern Switzerland Chan Division of Occupational Science and Occupational Therapy University of Southern California Los AngelesCA United States Stevens Neuroimaging and Informatics Institute Department of Neurology Keck School of Medicine University of Southern California United States University Institute of Diagnostic and Interventional Neuroradiology Inselspital Bern Switzerland University Institute of Diagnostic and Interventional Neuroradiology University Hospital Bern Inselspital University of Bern Bern Switzerland Department of Diagnostic and Interventional neuroradiology University Medical Center Hamburg-Eppendorf Hamburg Germany Department of Medical Imaging Radboud University Medical Center Institute for Health Sciences Nijmegen Netherlands Deepwise AI Lab Beijing China Beijing University of Posts and Telecommunications Bejing China School of Computing and Augmented Intelligence Arizona State University TempeAZ United States NVIDIA Santa ClaraCA United States STADIUS Center for Dynamical Systems Signal Processing and Data Analytics KU Leuven Leuven Belgium Pohang Korea Republic of School of Biomedical Engineering & Imaging Sciences King’s College London United Kingdom Institute of Computer Vision and Robotics University of Girona Spain Wellcome Centre for Human Neuroimaging University College London London United Kingdom Laboratory of Neuro Imaging Stevens Institute for Neuroimaging and Informatics Keck School of Medicine University of Southern California Los Angeles United States KU Leuven Leuven Belgium CREATIS Université Lyon1 CNRS UMR5220 INSERM U1206 INSA-Lyon Villeurbanne696

Diffusion-weighted MRI (DWI) is essential for stroke diagnosis, treatment decisions, and prognosis. However, image and disease variability hinder the development of generalizable ai algorithms with clinical value. We address this gap by presenting a novel ensemble algorithm derived from the 2022 Ischemic Stroke Lesion Segmentation (ISLES) challenge. ISLES’22 provided 400 patient scans with ischemic stroke from various medical centers, facilitating the development of a wide range of cutting-edge segmentation algorithms by the research community. By assessing them against a hidden test set, we identified strengths, weaknesses, and potential biases. Through collaboration with leading teams, we combined top-performing algorithms into an ensemble model that overcomes the limitations of individual solutions. Our ensemble model combines the individual algorithms’ strengths and achieved superior ischemic lesion detection and segmentation accuracy (median Dice score: 0.82, median lesion-wise F1 score: 0.86) on our internal test set compared to individual algorithms. This accuracy generalized well across diverse image and disease variables. Furthermore, the model excelled in extracting clinical biomarkers like lesion types and affected vascular territories. Notably, in a Turing-like test, neuroradiologists consistently preferred the algorithm’s segmentations over manual expert efforts, highlighting increased comprehensiveness and precision. Validation using a real-world external dataset (N=1686) confirmed the model’s generalizability (median Dice score: 0.82, median lesion-wise F1 score: 0.86). The algorithm’s outputs also demonstrated strong correlations with clinical scores (admission NIHSS and 90-day mRS) on par with or exceeding expert-derived results, underlining its clinical relevance. This study offers two key findings. First, we present an ensemble algorithm that detects and segments ischemic stroke lesions on DWI across diverse scenarios on par with expert (neuro)rad

关键词： Diagnosis