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4th International Conference on Informatics, Multimedia, Cyber and Information System, ICIMCIS 2022

作者： Asadi, Faisal Trinugroho, Joko Pebrianto Hidayat, Alam Ahmad Rahutomo, Reza Pardamean, Bens Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta11480 Indonesia School of Information Systems Bina Nusantara University Information System Department Jakarta11480 Indonesia Binus Graduate Program Master of Computer Science Bina Nusantara University Computer Science Department Jakarta11480 Indonesia

ISBN: (纸本)9781665473279

Tropical disease is one of the infectious diseases that affect Indonesia. Many people die because of tropical diseases, such as dengue hemorrhagic fever (DHF), chikungunya, leprosy, lymphatic, and filariasis. The Indonesian government's lack of public policy is the main problem in treating and preventing tropical diseases. The paper aims to describe the analysis results of the incidence of DHF in Jakarta, Indonesia. The analysis used the DHF incidences data from the Jakarta Health service surveillance office representative and combined it with the meteorological parameters data. The meteorological parameters were collected from the Bureau of Meteorological Climatology and Geophysics (BMKG). The statistical analysis of this research used Pearson's correlation. The results show that the meteorological parameters affecting DHF incidences are temperature, humidity, and wind speed. © 2022 IEEE.

关键词： Correlation methods

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A Design of Childhood Stunting Assessment Feature with Agile UX Approach 8

A Design of Childhood Stunting Assessment Feature with Agile...

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8th International HCI and UX Conference in Indonesia, CHIuXiD 2022

作者： Rahutomo, Reza Perbangsa, Anzaludin Samsinga Asadi, Faisal Nirwantono, Rudi Pardamean, Bens Bina Nusantara University School of Information Systems Information Systems Department Jakarta11480 Indonesia Bina Nusantara University Bioinformatics and Data Science Research Center Jakarta11480 Indonesia Bina Nusantara University BINUS Graduate Program-Master of Computer Science Computer Science Department Jakarta11480 Indonesia

ISBN: (纸本)9781665476645

multidisciplinary collaboration between public health, system engineering, and UX is able to generate a solution in healthcare problem like stunting. The principle of Agile UX gathers requirements to generate an application design. Currently, various website and mobile applications are available to be utilized for stunting research. StuntingDB is one of many web-based applications that specialized in stunting data management. The application required several types of users to operate hierarchically. This research focused on Public Health Officers' workflow that require a solution to in the form of assessment module for stunting DBMS by using Agile UX principle. The method collaborates agile team and UX team to solve Public Health Officer's difficulty in changing stunting status at pre-saved child patient's profile. Collaboration of both agile team and UX team successfully proposed an application design that system design. © 2022 IEEE.

关键词： Websites

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Identifying Important Usernames in 'Biofarma' Conversation using Twitter Network Analysis 7

Identifying Important Usernames in 'Biofarma' Conversation u...

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7th International Conference on Information Management and Technology, ICIMTech 2022

作者： Rahutomo, Reza Jariyah, Ainun Trinugroho, Joko Pebrianto Pardamean, Bens School of Information Systems Bina Nusantara University Information Systems Department Jakarta11480 Indonesia Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta11480 Indonesia BINUS Graduate Program-Master of Computer Science Bina Nusantara University Computer Science Department Jakarta11480 Indonesia

ISBN: (数字)9781665450904

ISBN: (纸本)9781665450904

This study analyzed interactions between Twitter users in conversations regarding Indonesia's state-owned vaccine manufacturer 'Biofarma' in 2021. The primary objective of this study is to identify Key Opinion Leaders (KOL) due to the need of authentic and trustworthy persona in social media. A technique called network centrality was employed in this research alongside four centrality measurements, namely degree of centrality, eigenvector centrality, betweenness centrality, and closeness centrality. Focused on using a reply network interaction dataset, the research discovered several important usernames with different roles that enlivened the conversation and have a potential for social media marketing optimization. © 2022 IEEE.

关键词： Marketing

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Database Management System Design Improvement for Child Stunting Data Collection in Multiple Observation Areas 7

Database Management System Design Improvement for Child Stun...

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7th International Conference on Information Management and Technology, ICIMTech 2022

作者： Rahutomo, Reza Elwirehardja, Gregorius Natanael Dominic, Nicholas Caesario, Benedict Pardamean, Bens School of Information Systems Bina Nusantara University Information Systems Department Jakarta11480 Indonesia Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta11480 Indonesia BINUS Graduate Program - Master of Computer Science Bina Nusantara University Computer Science Department Jakarta11480 Indonesia

ISBN: (数字)9781665450904

ISBN: (纸本)9781665450904

The launch of StuntingDB is believed to enliven the role of database management systems (DBMS) in Indonesia's stunting research. However, a novelty in stunting data management that enables parallel project activation in multiple observation areas is necessary. Several improved functionalities in StuntingDB must be designed to prevent the high demand for accessibility in the middle of stunting research. Connolly and Begg's principle of database design is adopted along with Software Development Life Cycle's Waterfall model for creating a continuous development of the system. This research produces a new database design in the form of Entity Relationship Diagram (ERD) and Use Case Diagram to help system developers realizing a new version of StuntingDB for stunting research in several observation areas. © 2022 IEEE.

关键词： Database systems

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Digital Twin (DT) Smart City for Air Quality Management

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Procedia computer science 2023年 227卷 524-533页

作者： Dedy Ariansyah Mahmud Isnan Reza Rahutomo Bens Pardamean Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta 11480 Indonesia Information Systems Department School of Information Systems Bina Nusantara University Jakarta 11480 Indonesia Computer Science Department BINUS Graduate Program-Master of Computer Science Program Bina Nusantara University Jakarta 11480 Indonesia

Air pollution is a pressing issue in cities, and managing air quality poses a challenge for urban designers and decision-makers. This study proposes a Digital Twin (DT) Smart City integrated with Mixed Reality technology to enhance visualization and collaboration for addressing urban air pollution. The research adopts an applied research approach, with a focus on developing a DT framework. A use case of DT development for Jakarta, the capital of Indonesia, is presented. By integrating air quality data, meteorological information, traffic patterns, and urban infrastructure data, the DT provides a comprehensive understanding of air pollution dynamics. The visualization capabilities of the DT, utilizing Mixed Reality technology, facilitate effective decision-making and the identification of strategies for managing air quality. However, further research is needed to address data management challenges to build a DT for Smart City at scale.

关键词： Digital Twin Smart City Mixed Reality Augmented Reality

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The Technology behind Genomic Database 4

The Technology behind Genomic Database

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4th International Conference on Cybernetics and Intelligent System, ICORIS 2022

作者： Trinugroho, Joko Pebrianto Perbangsa, Anzaludin Samsinga Pardamean, Bens Bina Nusantara University Bioinformatics and Data Science Research Center Jakarta11480 Indonesia School of Information Systems Bina Nusantara University Information Systems Department Jakarta11480 Indonesia Bina Nusantara University BINUS Graduate Program - Master of Computer Science Computer Science Department Jakarta11480 Indonesia

ISBN: (纸本)9781665453950

In this digital era, we are exposed to a large amount of data. This includes biological data, which stores information about living organisms, including Deoxyribonucleic acid (DNA), genes, and proteins. With the development of information technology and information system, most of available biological data are stored in an online public database. Many of the databases are free-access and easily used, which helps the users, especially researchers, to make use of the data. Among the known public biological databases are the University of California Santa Cruz (UCSC) Genome Browser Database and the Rat Genome Database (RGD). These two databases provide access to the biological data from different organisms. This paper aims to describe the technology of public biological databases. Also elucidated in this paper are the differences features between UCSC Genome Browser Database and the RGD. Our results showed that the UCSC contains much more biological data and features than the RGD. However, the genome browser of UCSC has a complex display, while the RGD has a simple display. Overall, both databases give the users the option to choose the most suitable database for them. © 2022 IEEE.

关键词： Rats

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Aggregating Structural Features for Computational Analysis of Mutations in BRCT Domains of BRCA1 Protein

Aggregating Structural Features for Computational Analysis o...

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International Conference on Informatics, Multimedia, Cyber and Information System (ICIMCIS)

作者： Alam Ahmad Hidayat Rudi Nirwantono Mahmud Isnan Joko Pebrianto Trinugroho Bens Pardamean Mathematics Department School of Computer Science Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta Indonesia Biotechnology Department Faculty of Engineering Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta Indonesia Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta Indonesia Computer Science Department Bioinformatics and Data Science Research Center BINUS Graduate Program Jakarta Indonesia

Understanding the mechanistic interpretability of mutation effects in a protein can help predict the clinical implications of the genetic variants. Hence, computational variant effect predictions that involve protein structural features of the protein mutations might be suitable in this case. In this work, we focus on BRCT domains of BRCA1 gene that is widely studied in breast cancer studies. We retrieved 88 selected missense variants found in BRCT domains annotated in both ClinVar and gnomAD databases. To computationally characterize the pathogenic property of the mutations we used two types of features extracted from protein structures: a change in free Gibbs energy and a set of features derived from molecular dynamics simulations of each mutant. Using a dimensional reduction and Gaussian mixture model (GMM)-based clustering we demonstrate that the variants are segregated into two regions that may correspond to their pathogenic status. This method can be a potential computational pipeline for providing the preliminary mechanistic interpretation of mutation effects in terms of their thermodynamic and structural features.

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Machine Learning Approach for Single Nucleotide Polymorphism Selection in Genetic Testing Results

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Procedia computer science 2023年 227卷 46-54页

作者： Joko Pebrianto Trinugroho Alam Ahmad Hidayat Mahmud Isnan Bens Pardamean Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta 11480 Indonesia Department of Mathematics School of Computer Science Bina Nusantara University Jakarta 11480 Indonesia Computer Science Department BINUS Graduate Program Bina Nusantara University Jakarta 11480 Indonesia

Lactose intolerance is a type of digestive problem that may threaten the population because milk and dairy products compose of nutrients that are essential for human body. Genetic tests possess a great potential to detect lactose intolerance as it can be used in children and even infants. However, a new approach to analyze the genetic test results is needed to elucidate the Single Nucleotide Polymorphisms (SNPs) that are related to lactose intolerance. In this work, we utilized the machine learning based feature selection to select the SNPs associated with lactose tolerance trait from genotyping samples of direct-to-customer (DTCG genetic tests, obtained from the public database. Recursive Feature Elimination (RFE) with XGBoost model was used to perform feature selection. We also compared three different models, such as XGBoost, support vector machine (SVM), and random forest (RF) for training the selected features. Our findings revealed that 20 SNPs (out of 3501) were chosen, with rs4394668 as the most important variables (F-score 0.009). Furthermore, when compared to the RF and SVM models, the XGBoost model had the highest accuracy (0.87). Further studies should be undertaken to elucidate how the selected SNPs may lead to the lactose intolerance trait.

关键词： lactose intolerance SNP genetic test feature selection

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Systematic Literature Review of Transformer Model Implementations in Detecting Depression

Systematic Literature Review of Transformer Model Implementa...

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International Conference of computer and Informatics Engineering (IC2IE)

作者： Kenjovan Nanggala Gregorius Natanael Elwirehardja Bens Pardamean Computer Science Department BINUS Graduate Program - Master of Computer Science Bina Nusantara University Jakarta Indonesia Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta Indonesia

This systematic literature review explores the application of transformer models in early detection of human depression, encompassing text, audio, and video data modalities. Transformer architectures, notably BERT for text, have proven adept at capturing crucial contextual and linguistic patterns associated with depression. For audio and video data, hybrid approaches that combine transformer models with other architectures are prevalent. Key features considered include eye gaze, head pose, facial muscle movements, and audio characteristics such as MFCC and Log-mel Spectrogram, along with text embeddings. Performance comparisons underscore the superiority of text-based data in consistently delivering the most promising results, followed by audio and video modalities when utilizing transformer models. The fusion of multiple modalities emerges as an effective strategy for enhancing predictive accuracy, with the amalgamation of audio, video, and text data yielding the most precise outcomes. However, it is noteworthy that unimodal approaches also exhibit potential, with text data exhibiting superior performance over audio and video data. Nevertheless, several challenges persist in this research domain, including imbalanced datasets, the limited availability of comprehensive and diverse samples, and the inherent complexities in interpreting visual cues. Addressing these challenges remains imperative for the continued advancement of depression detection using transformer-based models across various modalities.

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Pyramid Scene Parsing Net Model for Automated Paddy Field Map using SPOT 6 Satellite Images 5

Pyramid Scene Parsing Net Model for Automated Paddy Field Ma...

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5th IEEE Asia-Pacific Conference on Geoscience, Electronics and Remote Sensing Technology, AGERS 2022

作者： Heryadi, Yaya Irwansyah, Edy Miranda, Eka Soeparno, Haryono Herlawati Hashimoto, Kiyota Bina Nusantara University Binus Graduate Program-Doctor of Computer Science Computer Science Department Jakarta11480 Indonesia School of Computer Science Bina Nusantara University Computer Science Department Jakarta11480 Indonesia School of Information Systems Bina Nusantara University Information Systems Department Jakarta11480 Indonesia Bioinformatics and Data Science Research Center Bina Nusantara University Jakarta11480 Indonesia Prince of Songkla University Faculty of Technology and Environment Phuket83120 Thailand

ISBN: (纸本)9798350398212

Food sustainability is still one of the main priorities for many countries as it contributes to the economy and stability of the nation. For government in many countries whose peoples consumes rice as its staple food, food self-sufficiency initiatives highly depend on accurate prediction of paddy field map. Mapping paddy field task is a challenging problem which cannot be handled manually especially when the paddy fields are spread out in very wide geographical areas such as those in Indonesia. Fortunately, wide availability of satellite imagery and the advent of deep learning technology in the past ten years have made it possible to improve efficiency of most parts of those manual works involving image semantic segmentation tasks. However, satellite image-based semantic segmentation is a challenging task. High object complexity, cloud partial occlusion, larger image size than a computer memory can stored can hinder accuracy of the image segmentation results. This paper presents a method for paddy field map generating using semantic image segmentation approach in which Pyramid Scene Parsing Net model is used for segmenting satellite imagery. The generated paddy map can be used as a basis for decision-making, especially in the agricultural sector. Analysis of local land use/land cover dynamics. The results of his experiments using SPOT 6 satellite imagery from the Pahung region of Central Kalimantan achieved average training accuracy, best training accuracy and test accuracy of 0.85, 0.86 and 0.89 respectively. These results indicated that the semantic segmentation model is suitable for addressing the same task in different crops. © 2022 IEEE.

关键词： Image enhancement

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