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检索条件"机构=Department of Computer Science The Bioinformatics Program"
585 条 记 录,以下是521-530 订阅
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Human genome meeting 2016 : Houston, TX, USA. 28 February - 2 March 2016
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Human genomics 2016年 第1期10 Suppl 1卷 12页
作者: A. K. Srivastava Y. Wang R. Huang C. Skinner T. Thompson L. Pollard T. Wood F. Luo R. Stevenson R. Polimanti J. Gelernter X. Lin I. Y. Lim Y. Wu A. L. Teh L. Chen I. M. Aris S. E. Soh M. T. Tint J. L. MacIsaac F. Yap K. Kwek S. M. Saw M. S. Kobor M. J. Meaney K. M. Godfrey Y. S. Chong J. D. Holbrook Y. S. Lee P. D. Gluckman N. Karnani A. Kapoor D. Lee A. Chakravarti C. Maercker F. Graf M. Boutros G. Stamoulis F. Santoni P. Makrythanasis A. Letourneau M. Guipponi N. Panousis M. Garieri P. Ribaux E. Falconnet C. Borel S. E. Antonarakis S. Kumar J. Curran J. Blangero S. Chatterjee J. Akiyama D. Auer C. Berrios L. Pennacchio T. R. Donti G. Cappuccio M. Miller P. Atwal A. Kennedy A. Cardon C. Bacino L. Emrick J. Hertecant F. Baumer B. Porter M. Bainbridge P. Bonnen B. Graham R. Sutton Q. Sun S. Elsea Z. Hu P. Wang Y. Zhu J. Zhao M. Xiong David A. Bennett A. Hidalgo-Miranda S. Romero-Cordoba S. Rodriguez-Cuevas R. Rebollar-Vega E. Tagliabue M. Iorio E. D’Ippolito S. Baroni B. Kaczkowski Y. Tanaka H. Kawaji A. Sandelin R. Andersson M. Itoh T. Lassmann Y. Hayashizaki P. Carninci A. R. R. Forrest C. A. Semple E. A. Rosenthal B. Shirts L. Amendola C. Gallego M. Horike-Pyne A. Burt P. Robertson P. Beyers C. Nefcy D. Veenstra F. Hisama R. Bennett M. Dorschner D. Nickerson J. Smith K. Patterson D. Crosslin R. Nassir N. Zubair T. Harrison U. Peters G. Jarvik F. Menghi K. Inaki X. Woo P. Kumar K. Grzeda A. Malhotra H. Kim D. Ucar P. Shreckengast K. Karuturi J. Keck J. Chuang E. T. Liu B. Ji A. Tyler G. Ananda G. Carter H. Nikbakht M. Montagne M. Zeinieh A. Harutyunyan M. Mcconechy N. Jabado P. Lavigne J. Majewski J. B. Goldstein M. Overman G. Varadhachary R. Shroff R. Wolff M. Javle A. Futreal D. Fogelman L. Bravo W. Fajardo H. Gomez C. Castaneda C. Rolfo J. A. Pinto K. C. Akdemir L. Chin S. Patterson C. Statz S. Mockus S. N. Nikolaev X. I. Bonilla L. Parmentier B. King F. Bezrukov G. Kaya V. Zoete V. Seplyarskiy H. Sharpe T. McKee K. Popadin N. Basset-Seguin R. Ben Chaabene M. Andrianova C. Verdan K. Grosdemange O. Sumara M. E JCSRI Greenwood Genetic Center Greenwood USA School of Computing Clemson University Clemson USA Biochemical Genetics Laboratory Greenwood Genetic Center Greenwood USA Department Psychiatry Yale Sch Med and VA CT Healthcare Center West Haven USA Department Genetics Yale Sch Med and VA CT Healthcare Center West Haven USA Department Neurobiology Yale Sch Med and VA CT Healthcare Center West Haven USA Singapore Institute for Clinical Sciences Singapore Singapore National University of Singapore Singapore Singapore University of British Columbia Vancouver Canada KK Women’s and Children’s Hospital Singapore Singapore University of Southampton and University Hospital Southampton NHS Foundation Trust Southampton UK University of Auckland Auckland New Zealand McKusick-Nathans Institute of Genetic Medicine Johns Hopkins University School of Medicine Baltimore USA Esslingen University of Applied Sciences Esslingen Germany German Cancer Research Center Heidelberg Germany Department of Genetic Medicine and Development University of Geneva Medical School Geneva Switzerland Geneva University Hospitals-HUG Service of Genetic Medicine Geneva Switzerland GE3 Institute of Genetics and Genomics of Geneva University of Geneva Medical School Geneva Switzerland South Texas Diabetes and Obesity Institute School of Medicine University of Texas Rio-Grande Valley Edinburg USA South Texas Diabetes and Obesity Institute School of Medicine University of Texas Rio-Grande Valley Brownsville USA Institute of Genetic Medicine Johns Hopkins University Baltimore USA Genomics Division Lawrence Berkeley National Laboratory Berkeley USA Molecular and Human Genetics Baylor College of Medicine Houston USA Department of Translational Medical Sciences Federico II University Naples Italy Metabolon Inc Durham USA Section of Pediatric Neurology and Neuroscience Baylor College of Medicine Houston USA Tawam Hospital Abu Dhabi United Arab Emirates Stanford Medical School Stanford USA Sch
O1 The metabolomics approach to autism: identification of biomarkers for early detection of autism spectrum disorder A. K. Srivastava, Y. Wang, R. Huang, C. Skinner, T. Thompson, L. Pollard, T. Wood, F. Luo, R. Steven... 详细信息
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Proceedings of the 8th Annual Conference on the science of Dissemination and Implementation : Washington, DC, USA. 14-15 December 2015
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Implementation science : IS 2016年 第2期11 Suppl 2卷 100页
作者: Chambers, David Simpson, Lisa Hill-Briggs, Felicia Neta, Gila Vinson, Cynthia Beidas, Rinad Marcus, Steven Aarons, Gregory Hoagwood, Kimberly Schoenwald, Sonja Evans, Arthur Hurford, Matthew Rubin, Ronnie Hadley, Trevor Barg, Frances Walsh, Lucia Adams, Danielle Mandell, David Martin, Lindsey Mignogna, Joseph Mott, Juliette Hundt, Natalie Kauth, Michael Kunik, Mark Naik, Aanand Cully, Jeffrey McGuire, Alan White, Dominique Bartholomew, Tom McGrew, John Luther, Lauren Rollins, Angie Salyers, Michelle Cooper, Brittany Funaiole, Angie Richards, Julie Lee, Amy Lapham, Gwen Caldeiro, Ryan Lozano, Paula Gildred, Tory Achtmeyer, Carol Ludman, Evette Addis, Megan Marx, Larry Bradley, Katharine VanDeinse, Tonya Wilson, Amy Blank Stacey, Burgin Powell, Byron Bunger, Alicia Cuddeback, Gary Barnett, Miya Stadnick, Nicole Brookman-Frazee, Lauren Lau, Anna Dorsey, Shannon Pullmann, Michael Mitchell, Shannon Schwartz, Robert Kirk, Arethusa Dusek, Kristi Oros, Marla Hosler, Colleen Gryczynski, Jan Barbosa, Carolina Dunlap, Laura Lounsbury, David O’Grady, Kevin Brown, Barry Damschroder, Laura Waltz, Thomas Ritchie, Mona Atkins, David Imel, Zac E. Xiao, Bo Can, Doğan Georgiou, Panayiotis Narayanan, Shrikanth Berkel, Cady Gallo, Carlos Sandler, Irwin Brown, C. Hendricks Wolchik, Sharlene Mauricio, Anne Marie Mehrotra, Sanjay Chandurkar, Dharmendra Bora, Siddhartha Das, Arup Tripathi, Anand Saggurti, Niranjan Raj, Anita Hughes, Eric Jacobs, Brian Kirkendall, Eric Loeb, Danielle Trinkley, Katy Yang, Michael Sprowell, Andrew Nease, Donald Lyon, Aaron Lewis, Cara Boyd, Meredith Melvin, Abigail Nicodimos, Semret Liu, Freda Jungbluth, Nathanial Flynn, Allen Landis-Lewis, Zach Sales, Anne Baloh, Jure Ward, Marcia Zhu, Xi Bennett, Ian Unutzer, Jurgen Mao, Johnny Proctor, Enola Vredevoogd, Mindy Chan, Ya-Fen Williams, Nathaniel Green, Phillip Bernstein, Steven Rosner, June-Marie DeWitt, Michelle Tetrault, Jeanette Dziura, James Hsiao, Allen Sussman, Scott O’Connor, Patrick Toll, Benjamin Jones, Michael Gassaway, Julie Tobin, Jonathan Zatzic Division of Cancer Control and Population Sciences National Cancer Institute National Institutes of Health Rockville USA AcademyHealth Washington USA Department of Medicine and Welch Center for Prevention Epidemiology and Clinical Research Johns Hopkins Medical Institutions Baltimore USA Psychiatry University of Pennsylvania Philadelphia USA Family Medicine and Community Health University of Pennsylvania Philadelphia USA School of Social Policy and Practice University of Pennsylvania Philadelphia USA Psychiatry UC San Diego La Jolla USA Child & Adolescent Psychiatry The Child Study Center at NYU Langone Medical Center New York NY New York USA Psychiatry and Behavioral Sciences MUSC Charleston USA DBHIDS City of Philadelphia Philadelphia USA CBH City of Philadelphia Philadelphia USA Psychiatry University of Pennsylvania Perelman School of Medicine Philadelphia USA Health Services Research & Development Department of Veterans Affairs & Baylor College of Medicine Houston USA Treatment Core Department of Veterans Affairs Waco USA National Center for PTSD Executive Division Department of Veterans Affairs White River Junction USA HSR&D HSR&D Center for Health Information and Communication Roudebush VA Medical Center Indianapolis USA Psychology Indiana University Purdue University Indianapolis Indianapolis USA Department of Psychiatric Rehabilitation and Counseling Rutgers University Newark USA Health Services Research & Development Richard L. Roudebush VAMC Indianapolis USA IUPUI Department of Psychology ACT Center of Indiana Indianapolis USA Human Development Washington State University Pullman USA Prevention Science Washington State University Pullman USA Group Health Research Institute Group Health Seattle USA Behavioral Health Services Group Health Seattle USA Preventive Care Group Health Seattle USA Health Services Research & Development Primary and Specialty Medical Care Service VA Puget Sound Seattle USA School of Social Work Un
A1 Introduction to the 8th Annual Conference on the science of Dissemination and Implementation: Optimizing Personal and Population Health David Chambers, Lisa Simpson D1 Discussion forum: Population health D&... 详细信息
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1006-LBP
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Human Immunology 2014年 第6期75卷 481-481页
作者: Mack, Steven J. Yamaguchi, Ken D. Salamon, Hugh Pena, Anthony G. Horton, Robert M. Francis-Lyon, Patricia Maiers, Martin Hollenbach, Jill A. Center for Genetics Children’s Hospital Oakland Research Institute Oakland CA 94609 United States Knowledge Synthesis Inc. Berkeley CA 94710 United States Department of Computer Science University of San Francisco San Francisco CA 94117 United States Department of Microbiology and Immunology University of California San Francisco San Francisco CA 94143 United States Division of Bioinformatics National Marrow Donor Program Minneapolis MN 55413 United States
Aim Analyses of highly polymorphic HLA and KIR locus data require specialized tools and methods, but most modern analytical programs are tailored for SNPs. A typical analytical workflow for HLA and KIR data requires t...
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Genome-wide Search for Coaxial Helical Stacking Motifs
Genome-wide Search for Coaxial Helical Stacking Motifs
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BIBE 2012
作者: Kevin Byron Jason T. L. Wang Dongrong Wen Bioinformatics Program and Department of Computer Science New Jersey Institute of Technology Newark
Motif finding in DNA, RNA and proteins plays an important role in life science research. In this paper, we present a computational approach to searching for RNA tertiary motifs in genomic sequences. Specifically, we d... 详细信息
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Modeling the breakage-fusion-bridge mechanism: Combinatorics and cancer genomics
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16th Annual International Conference on Research in Computational Molecular Biology, RECOMB 2012
作者: Kinsella, Marcus Bafna, Vineet Bioinformatics and Systems Biology Program University of California San Diego San Diego CA 92093 United States Department of Computer Science and Engineering University of California San Diego San Diego CA 92093 United States
The breakage-fusion-bridge (BFB) mechanism was proposed over seven decades ago and is a source of genomic variability and gene amplification in cancer. Here we formally model and analyze the BFB mechanism, to our know... 详细信息
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71 Genomic regions flanking E-box binding sites influence DNA binding specificity of bHLH transcription factors through DNA shape
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Journal of Biomolecular Structure and Dynamics 2013年 第SUPP 1期31卷 45-46页
作者: Raluca Gordan[a][b][*] Ning Shen[c] Iris Dror[d] Tianyin Zhou[d] John Horton[b] Remo Rohs[d] & Martha L. Bulyk[e][f] [a] Departments of Biostatistics and Bioinformatics Computer Science and Molecular Genetics and Microbiology Duke University Durham NC USA [b] Institute for Genome Sciences and Policy Duke University Durham NC 27708 USA Phone: Phone: +1 (919) 667-8673 Fax: Phone: +1 (919) 667-8673 [c] Department of Pharmacology and Cancer Biology Duke University Durham NC 27708 USA [d] Molecular and Computational Biology Program Departments of Biological Sciences Chemistry and Physics and Astronomy University of Southern California 1050 Childs Way Los Angeles CA 90089 USA [e] Division of Genetics Departments of Medicine and Pathology Brigham and Women’s Hospital and Harvard Medical School Boston MA 02115 USA [f] Harvard-MIT Division of Health Sciences and Technology (HST) Harvard Medical School Boston MA 02115 USA
Transcriptional regulation of gene expression is enacted mainly through binding of transcription factors (TFs) to specific, short DNA sites in cis-regulatory regions of genes. Most TFs are members of protein families ...
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Secondary structure predictions for long RNA sequences based on inversion excursions - Preliminary results  12
Secondary structure predictions for long RNA sequences based...
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2012 ACM Conference on bioinformatics, Computational Biology and Biomedicine, BCB 2012
作者: Yehdego, Daniel T. Zhang, Boyu Taufer, Michela Kodimala, Vikram Kumar Reddy Vegesna, Rahulsimham Viswakula, Sameera Johnson, Kyle L. Leung, Ming-Ying Computational Science Program University of Texas El Paso United States Department of Computer and Information Sciences University of Delaware United States Bioinformatics Program Border Biomedical Research Center University of Texas El Paso United States Department of Mathematical Sciences University of Texas El Paso United States Department of Biological Sciences University of Texas El Paso United States Department of Mathematics and Statistics Old Dominion University Norfolk VA United States University of Texas M. D. Anderson Cancer Center Houston TX United States
The tremendous demand on computer memory and computing time for prediction of complex secondary structures limits the applicability of most RNA secondary structure prediction programs available to short RNA sequences.... 详细信息
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Corrigendum to “Weight loss intervention for young adults using mobile technology: Design and rationale of a randomized controlled trial — Cell phone Intervention for You (CITY)” [Contemp Clin Trials 37/2 (2014) 333–341]
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Contemporary Clinical Trials 2014年 第2期39卷 351-351页
作者: Bryan C. Batch Crystal Tyson Jacqueline Bagwell Leonor Corsino Stephen Intille Pao-Hwa Lin Tony Lazenka Gary Bennett Hayden B. Bosworth Corrine Voils Steven Grambow Aziza Sutton Rachel Bordogna Matthew Pangborn Jenifer Schwager Kate Pilewski Carla Caccia Jasmine Burroughs Laura P. Svetkey Department of Medicine Division of Endocrinology Duke University Medical Center DUMC Box 3921 Durham NC 27710 USA Sarah W. Stedman Nutrition and Metabolism Center 3475 Erwin Road Duke University Medical Center Durham NC 27710 USA Department of Medicine Division of Nephrology Duke University Medical Center DUMC Box 103105 Durham NC 27710 USA College of Computer and Information Science Northeastern University 202 West Village H Office 450 360 Huntington Avenue Boston MA 02115 USA Bouvé College of Health Sciences Northeastern University 202 West Village H Office 450 360 Huntington Avenue Boston MA 02115 USA Department of Psychology & Neuroscience Duke University Medical Center Box 90086 417 Chapel Drive Duke University Durham NC 27708-0086 USA Duke Obesity Prevention Program Duke University Medical Center Durham NC USA Duke Global Health Institute Duke University Medical Center 310 Trent Drive Durham NC 27710 USA Center for Health Services Research in Primary Care Durham Veterans Affairs Medical Center 508 Fulton Street Durham NC 27705 USA Department of Medicine Division of General Internal Medicine Duke University Medical Center Box 3240 Durham NC 27710 USA Department of Psychiatry Duke University Medical Center 2301 Erwin Road Durham NC 27710 USA Duke University School of Nursing 307 Trent Drive DUMC 3322 Durham NC 27710 USA Department of Biostatistics and Bioinformatics Duke University Medical Center DUMC Box 2721 Durham NC 27710 USA
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Mapping short sequencing reads to distant relatives  11
Mapping short sequencing reads to distant relatives
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2011 ACM Conference on bioinformatics, Computational Biology and Biomedicine, ACM-BCB 2011
作者: Reynoso, Vinicio Putonti, Catherine Department of Biology Bioinformatics Program Loyola University Chicago 1032 W Sheridan Rd. Chicago IL 60660 United States Department of Computer Science Bioinformatics Program Loyola University Chicago 1032 W Sheridan Rd. Chicago IL 60660 United States
Numerous different algorithmic approaches have been developed to map the short-reads produced by next-generation sequencing technologies onto reference genome sequences. When sufficiently close reference genomes do no... 详细信息
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Active clustering of biological sequences
The Journal of Machine Learning Research
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The Journal of Machine Learning Research 2012年 第1期13卷
作者: Konstantin Voevodski Maria-Florina Balcan Heiko Röglin Shang-Hua Teng Yu Xia Google New York NY College of Computing Georgia Institute of Technology Atlanta GA Department of Computer Science University of Bonn Bonn Germany Computer Science Department University of Southern California Los Angeles CA Bioinformatics Program and Department of Chemistry Boston University Boston MA
Given a point set S and an unknown metric d on S, we study the problem of efficiently partitioning S into k clusters while querying few distances between the points. In our model we assume that we have access to one v... 详细信息
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