Linear approaches to low-dimensional feature extraction may not be appropriate when statistical data are generated by a nonlinear interaction of parameters. Equally inadequate are linear methods for determining the di...
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Linear approaches to low-dimensional feature extraction may not be appropriate when statistical data are generated by a nonlinear interaction of parameters. Equally inadequate are linear methods for determining the dimension of the feature space. This article estimates the intrinsic dimension of extracellular action potentials (EAPs), which can be viewed as the minimum number of nonlinearly interacting parameters sufficient to describe the data. When combined with nonlinear feature extraction methods, this information may lead to a more faithful, low-dimensional EAP representation. These points are demonstrated using EAPs recorded experimentally by a multi-sensor electrode.
In this paper, as variations of a Tai mapping between rooted labeled ordered trees (trees, for short), we introduce a segmental mapping to preserve the parent-children relationship as possible, and also top-down segme...
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In this paper, as variations of a Tai mapping between rooted labeled ordered trees (trees, for short), we introduce a segmental mapping to preserve the parent-children relationship as possible, and also top-down segmengal and bottom-up segmental mappings as the segmental mappings that contain the pair of the roots and the pair of the leaves, respectively. Then, we show that these mappings provide a new hierarchy for the variations of the Tai mapping in addition to a well-known one, in particular, the top-down segmental mapping coincides with a top-down mapping. Also we show that both segmental and bottom-up segmental distances as the minimum costs of segmental and bottom-up segmental mappings are metrics. Next, we design algorithms to compute the segmental and the bottom-up segmental distances in quadratic time and space. Finally, we give experimental results for the segmental distance.
Vehicular networks will play an important role in future smart cities. Connected vehicles will be able to provide entertainment content to their users in order to make traffic situations more enjoyable. However, the a...
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Vehicular networks will play an important role in future smart cities. Connected vehicles will be able to provide entertainment content to their users in order to make traffic situations more enjoyable. However, the amount of bandwidth available to the vehicles may not be enough to satisfy all of them. In this case, we can say that a conflict of interest occurred and then must the solved as fair as possible. In this work, we propose a solution to solve this kind of collective conflict. Our solution balances users' satisfaction with resources consumption as it is capable of choosing the most adequate resolution algorithm based on the current application's situation. The results showed that with our solution it was possible to achieve adequate satisfaction levels, with low response time and controlled network usage.
To investigate the genetic basis of type 2 diabetes (T2D) to high resolution, the GoT2D and T2D-GENES consortia catalogued variation from whole-genome sequencing of 2,657 European individuals and exome sequencing of 1...
To investigate the genetic basis of type 2 diabetes (T2D) to high resolution, the GoT2D and T2D-GENES consortia catalogued variation from whole-genome sequencing of 2,657 European individuals and exome sequencing of 12,940 individuals of multiple ancestries. Over 27M SNPs, indels, and structural variants were identified, including 99% of low-frequency (minor allele frequency [MAF] 0.1-5%) non-coding variants in the whole-genome sequenced individuals and 99.7% of low-frequency coding variants in the whole-exome sequenced individuals. Each variant was tested for association with T2D in the sequenced individuals, and, to increase power, most were tested in larger numbers of individuals (>80% of low-frequency coding variants in ~82 K Europeans via the exome chip, and ~90% of low-frequency non-coding variants in ~44 K Europeans via genotype imputation). The variants, genotypes, and association statistics from these analyses provide the largest reference to date of human genetic information relevant to T2D, for use in activities such as T2D-focused genotype imputation, functional characterization of variants or genes, and other novel analyses to detect associations between sequence variation and T2D.
The TODIM (an acronym in Portuguese for Interative Multi-criteria Decision Making) method has recently been extended firstly to fuzzy and next to intuitionistic fuzzy environments with promising results. In this paper...
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The TODIM (an acronym in Portuguese for Interative Multi-criteria Decision Making) method has recently been extended firstly to fuzzy and next to intuitionistic fuzzy environments with promising results. In this paper, we further consider the extension of TODIM to interval-valued intuitionistic fuzzy (IVIF) environments. Two case studies are used to illustrate the approach to multi-criteria decision making. Experimental results show the effectiveness of the presented method.
A1 Highlights from the eleventh ISCB Student Council Symposium 2015 Katie Wilkins, Mehedi Hassan, Margherita Francescatto, Jakob Jespersen, R. Gonzalo Parra, Bart Cuypers, Dan DeBlasio, Alexander Junge, Anupama Jigish...
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A1 Highlights from the eleventh ISCB Student Council Symposium 2015 Katie Wilkins, Mehedi Hassan, Margherita Francescatto, Jakob Jespersen, R. Gonzalo Parra, Bart Cuypers, Dan DeBlasio, Alexander Junge, Anupama Jigisha, Farzana Rahman O1 Prioritizing a drug’s targets using both gene expression and structural similarity Griet Laenen, Sander Willems, Lieven Thorrez, Yves Moreau O2 Organism specific protein-RNA recognition: A computational analysis of protein-RNA complex structures from different organisms Nagarajan Raju, Sonia Pankaj Chothani, C. Ramakrishnan, Masakazu Sekijima; M. Michael Gromiha O3 Detection of Heterogeneity in Single Particle Tracking Trajectories Paddy J Slator, Nigel J Burroughs O4 3D-NOME: 3D NucleOme Multiscale Engine for data-driven modeling of three-dimensional genome architecture Przemysław Szałaj, Zhonghui Tang, Paul Michalski, Oskar Luo, Xingwang Li, Yijun Ruan, Dariusz Plewczynski O5 A novel feature selection method to extract multiple adjacent solutions for viral genomic sequences classification Giulia Fiscon, Emanuel Weitschek, Massimo Ciccozzi, Paola Bertolazzi, Giovanni Felici O6 A Systems Biology Compendium for Leishmania donovani Bart Cuypers, Pieter Meysman, Manu Vanaerschot, Maya Berg, Hideo Imamura, Jean-Claude Dujardin, Kris Laukens O7 Unravelling signal coordination from large scale phosphorylation kinetic data Westa Domanova, James R. Krycer, Rima Chaudhuri, Pengyi Yang, Fatemeh Vafaee, Daniel J. Fazakerley, Sean J. Humphrey, David E. James, Zdenka Kuncic
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