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arXiv 2022年

作者： Eichenberger, Christian Neun, Moritz Martin, Henry Herruzo, Pedro Spanring, Markus Lu, Yichao Choi, Sungbin Konyakhin, Vsevolod Lukashina, Nina Shpilman, Aleksei Wiedemann, Nina Raubal, Martin Wang, Bo Vu, Hai L. Mohajerpoor, Reza Cai, Chen Kim, Inhi Hermes, Luca Melnik, Andrew Velioglu, Riza Vieth, Markus Schilling, Malte Bojesomo, Alabi Al Marzouqi, Hasan Liatsis, Panos Santokhi, Jay Hillier, Dylan Yang, Yiming Sarwar, Joned Jordan, Anna Hewage, Emil Jonietz, David Tang, Fei Gruca, Aleksandra Kopp, Michael Kreil, David Hochreiter, Sepp Vienna Austria Institute of Cartography and Geoinformation ETH Zurich Switzerland Layer 6 AI Toronto Canada ITMO University Saint Petersburg Russia JetBrains Research Saint Petersburg Russia HSE University Saint Petersburg Russia Institute of Transport Studies Monash University ClaytonVIC Australia CSIRO’s Data61 Eveleigh Australia Institute Civil and Environmental Engineering Department Kongju National University Korea Republic of Machine Learning & Neuroinformatics Group Bielefeld University Germany Electrical Engineering and Computer Science Department Khalifa University Abu Dhabi United Arab Emirates Alchera Data Technologies Ltd Cambridge United Kingdom HERE Technologies Zurich Switzerland Silesian University of Technology Gliwice Poland Machine Learning Institute Johannes Kepler University Linz Austria

The IARai Traffic4cast competitions at NeurIPS 2019 and 2020 showed that neural networks can successfully predict future traffic conditions 1 hour into the future on simply aggregated GPS probe data in time and space bins. We thus reinterpreted the challenge of forecasting traffic conditions as a movie completion task. U-Nets proved to be the winning architecture, demonstrating an ability to extract relevant features in this complex real-world geo-spatial process. Building on the previous competitions, Traffic4cast 2021 now focuses on the question of model robustness and generalizability across time and space. Moving from one city to an entirely different city, or moving from pre-COVID times to times after COVID hit the world thus introduces a clear domain shift. We thus, for the first time, release data featuring such domain shifts. The competition now covers ten cities over 2 years, providing data compiled from over 1012 GPS probe data. Winning solutions captured traffic dynamics sufficiently well to even cope with these complex domain shifts. Surprisingly, this seemed to require only the previous 1h traffic dynamic history and static road graph as input. © 2022, CC BY-NC-SA.

关键词： Probes

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Unleashing the Strengths of Unlabeled Data in Pan-cancer Abdominal Organ Quantification: The FLARE22 Challenge

arXiv

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arXiv 2023年

作者： Ma, Jun Zhang, Yao Gu, Song Ge, Cheng Ma, Shihao Young, Adamo Zhu, Cheng Meng, Kangkang Yang, Xin Huang, Ziyan Zhang, Fan Liu, Wentao Pan, YuanKe Huang, Shoujin Wang, Jiacheng Sun, Mingze Xu, Weixin Jia, Dengqiang Choi, Jae Won Alves, Natália de Wilde, Bram Koehler, Gregor Wu, Yajun Wiesenfarth, Manuel Zhu, Qiongjie Dong, Guoqiang He, Jian Wang, Bo He, Junjun Yang, Hua Yang, Huihua Huang, Bingding Lyu, Mengye Ma, Yongkang Guo, Heng Zhang, Rongguo Maier-Hein, Klaus The Department of Laboratory Medicine and Pathobiology University of Toronto Peter Munk Cardiac Centre University Health Network Vector Institute Toronto Canada Shanghai AI Laboratory Shanghai200232 China The Department of Image Reconstruction Nanjing Anke Medical Technology Co. Ltd. Nanjing211113 China Ocean University of China Qingdao266100 China The Department of Computer Science University of Toronto Peter Munk Cardiac Centre University Health Network Vector Institute Toronto Canada Tinavi Medical Technologies Co. Ltd. Beijing100192 China University of Science and Technology Beijing Beijing100083 China The School of Biomedical Engineering Health Science Center Shenzhen University Shenzhen518055 China The Department of Radiological Algorithm Fosun Aitrox Information Technology Co. Ltd. Shanghai200033 China The School of Artificial Intelligence Beijing University of Posts and Telecommunications Beijing100876 China Shenzhen Technology University Shenzhen518000 China Xiamen University Xiamen361005 China Alibaba Beijing100084 China Infervision Medical Technology Co. Ltd. Beijing100025 China Hong Kong Centre for Cerebro-cardiovascular Health Engineering 000000 Hong Kong The Department of Radiology Armed Forces Yangju Hospital Yangju11429 Korea Republic of The Department of Radiology Radboudumc Nijmegen6525XZ Netherlands The Department of Medical Image Computing German Cancer Research Center Heidelberg69120 Germany ShenZhen Yorktal DMIT LLC Shenzhen518100 China Heidelberg69120 Germany The Department of Nuclear Medicine Nanjing Drum Tower Hospital Nanjing210008 China The College of Big Data and Internet Shenzhen Technology University Shenzhen518188 China The College of Health Science and Environmental Engineering Shenzhen Technology University Shenzhen China The Manteia Technologies Co. Ltd Xiamen China The Alibaba DAMO Academy Beijing China The Peter Munk Cardiac Centre University Health Network Department of Laboratory M

Quantitative organ assessment is an essential step in automated abdominal disease diagnosis and treatment planning. Artificial intelligence (ai) has shown great potential to automatize this process. However, most existing ai algorithms rely on many expert annotations and lack a comprehensive evaluation of accuracy and efficiency in real-world multinational settings. To overcome these limitations, we organized the FLARE 2022 Challenge, the largest abdominal organ analysis challenge to date, to benchmark fast, low-resource, accurate, annotation-efficient, and generalized ai algorithms. We constructed an intercontinental and multinational dataset from more than 50 medical groups, including Computed Tomography (CT) scans with different races, diseases, phases, and manufacturers. We independently validated that a set of ai algorithms achieved a median Dice Similarity Coefficient (DSC) of 90.0% by using 50 labeled scans and 2000 unlabeled scans, which can significantly reduce annotation requirements. The best-performing algorithms successfully generalized to holdout external validation sets, achieving a median DSC of 89.5%, 90.9%, and 88.3% on North American, European, and Asian cohorts, respectively. They also enabled automatic extraction of key organ biology features, which was labor-intensive with traditional manual measurements. This opens the potential to use unlabeled data to boost performance and alleviate annotation shortages for modern ai models. © 2023, CC BY-NC-ND.

关键词： Diseases

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Joint Channel Estimation and Signal Recovery for RIS-Empowered Multi-User Communications

arXiv

引用

arXiv 2021年

作者： Wei, Li Huang, Chongwen Guo, Qinghua Yang, Zhaohui Zhang, Zhaoyang Alexandropoulos, George C. Debbah, Mérouane Yuen, Chau Pillar Singapore University of Technology and Design Singapore487372 Singapore College of Information Science and Electronic Engineering Zhejiang University Hangzhou310007 China Hangzhou310007 China International Joint Innovation Center Zhejiang University Haining314400 China Zhejiang-Singapore Innovation and AI Joint Research Lab Hangzhou310027 China Zhejiang Laboratory Hangzhou31121 China School of Electrical Computer and Telecommunications Engineering University of Wollongong WollongongNSW2522 Australia Department of Informatics and Telecommunications National and Kapodistrian University of Athens Panepistimiopolis Ilissia Athens15784 Greece Technology Innovation Institute Masdar City Abu Dhabi9639 United Arab Emirates CentraleSupelec University Paris-Saclay Gif-sur-Yvette91192 France

Reconfigurable intelligent surfaces (RISs) have been recently considered as a promising candidate for energy-efficient solutions in future wireless networks. Their dynamic and low-power configuration enables coverage extension, massive connectivity, and low-latency communications. Due to a large number of unknown variables referring to the RIS unit elements and the transmitted signals, channel estimation and signal recovery in RIS-based systems are the ones of the most critical technical challenges. To address this problem, we focus on the RIS-assisted wireless communication system and present two joint channel estimation and signal recovery schemes based on message passing algorithms in this paper. Specifically, the proposed bidirectional scheme applies the Taylor series expansion and Gaussian approximation to simplify the sum-product procedure in the formulated problem. In addition, the inner iteration that adopts two variants of approximate message passing algorithms is incorporated to ensure robustness and convergence. Two ambiguities removal methods are also discussed in this paper. Our simulation results show that the proposed schemes show the superiority over the state-of-art benchmark method. We also provide insights on the impact of different RIS parameter settings on the proposed schemes. Copyright © 2021, The Authors. All rights reserved.

关键词： Channel estimation

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On the role of theory and modeling in neuroscience

arXiv

引用

arXiv 2020年

作者： Levenstein, Daniel Alvarez, Veronica A. Amarasingham, Asohan Azab, Habiba Chen, Zhe S. Gerkin, Richard C. Hasenstaub, Andrea Iyer, Ramakrishnan Jolivet, Renaud B. Marzen, Sarah Monaco, Joseph D. Prinz, Astrid A. Quraishi, Salma Santamaria, Fidel Shivkumar, Sabyasachi Singh, Matthew F. Traub, Roger Rotstein, Horacio G. Nadim, Farzan Redish, A. David Montreal Neurological Institute McGill University MontrealQC Canada Laboratory on Neurobiology of Compulsive Behaviors National Institute on Alcohol Abuse and Alcoholism NIH BethesdaMD United States Department of Neuroscience Center for Magnetic Resonance Research University of Minnesota MinneapolisMN United States School of Life Sciences Arizona State University TempeAZ United States Department of Otolaryngology - Head and Neck Surgery University of California San Francisco San FranciscoCA United States Allen Institute for Brain Science SeattleWA United States Maastricht University Maastricht Netherlands Department of Biomedical Engineering Johns Hopkins University School of Medicine BaltimoreMD United States Department of Biology University of Texas at San Antonio San AntonioTX United States Department of Psychological & Brain Sciences Department of Electrical & Systems Engineering Washington University in St. Louis St. LouisMO United States IBM T.J. Watson Research Center AI Foundations Yorktown HeightsNY United States W. M. Keck Science Department Pitzer Scripps and Claremont McKenna Colleges ClaremontCA United States Department of Biology Emory University AtlantaGA United States Department of Mathematics City College of New York United States Departments of Biology Computer Science and Psychology The Graduate Center City University of New York United States Brain and Cognitive Sciences University of Rochester RochesterNY United States Federated Department of Biological Sciences New Jersey Institute of Technology Rutgers University Institute for Brain and Neuroscience Research New Jersey Institute of Technology NewarkNJ United States Department of Neuroscience University of Minnesota MinneapolisMN United States Department of Psychiatry Neuroscience & Physiology New York University School of Medicine United States Mila - Quebec AI Institute MontrealQC Canada

In recent years, the field of neuroscience has gone through rapid experimental advances and a significant increase in the use of quantitative and computational methods. This growth has created a need for clearer analyses of the theory and modeling approaches used in the field. This issue is particularly complex in neuroscience because the field studies phenomena that cross a wide range of scales and often require consideration at varying degrees of abstraction, from precise biophysical interactions to the computations they implement. We argue that a pragmatic perspective of science, in which descriptive, mechanistic, and normative models and theories each play a distinct role in defining and bridging levels of abstraction will facilitate neuroscientific practice. This analysis leads to methodological suggestions, including selecting a level of abstraction that is appropriate for a given problem, identifying transfer functions to connect models and data, and the use of models themselves as a form of experiment. © 2020, CC BY.

关键词： Computation theory

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Brain-inspired learning in artificial neural networks: A review

APL Machine Learning

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APL Machine Learning 2024年第2期2卷

作者： Samuel Schmidgall Rojin Ziaei Jascha Achterberg Louis Kirsch S. Pardis Hajiseyedrazi Jason Eshraghian Department of Electrical and Computer Engineering Johns Hopkins University Baltimore Maryland 21212 USA Department of Information Science University of Maryland College Park Maryland 20742 USA Intel Labs Santa Clara California 95054 USA Centre for Neural Circuits and Behavior University of Oxford Oxford OX1 3SR United Kingdom The Swiss AI Lab IDSIA 6962 Viganello Switzerland Department of Electrical and Computer Engineering University of Maryland College Park Maryland 20742 USA Department of Electrical and Computer Engineering University of California Santa Cruz Santa Cruz California 95064 USA

Artificial neural networks (ANNs) have emerged as an essential tool in machine learning, achieving remarkable success across diverse domains, including image and speech generation, game playing, and robotics. However, there exist fundamental differences between ANNs’ operating mechanisms and those of the biological brain, particularly concerning learning processes. This paper presents a comprehensive review of current brain-inspired learning representations in artificial neural networks. We investigate the integration of more biologically plausible mechanisms, such as synaptic plasticity, to improve these networks’ capabilities. Moreover, we delve into the potential advantages and challenges accompanying this approach. In this review, we pinpoint promising avenues for future research in this rapidly advancing field, which could bring us closer to understanding the essence of intelligence.

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Roadmap on Deep Learning for Microscopy

arXiv

引用

arXiv 2023年

作者： Volpe, Giovanni Wählby, Carolina Tian, Lei Hecht, Michael Yakimovich, Artur Monakhova, Kristina Waller, Laura Sbalzarini, Ivo F. Metzler, Christopher A. Xie, Mingyang Zhang, Kevin Lenton, Isaac C.D. Rubinsztein-Dunlop, Halina Brunner, Daniel Bai, Bijie Ozcan, Aydogan Midtvedt, Daniel Wang, Hao Sladoje, Nataša Lindblad, Joakim Smith, Jason T. Ochoa, Marien Barroso, Margarida Intes, Xavier Qiu, Tong Yu, Li-Yu You, Sixian Liu, Yongtao Ziatdinov, Maxim A. Kalinin, Sergei V. Sheridan, Arlo Manor, Uri Nehme, Elias Goldenberg, Ofri Shechtman, Yoav Moberg, Henrik K. Langhammer, Christoph Špačková, Barbora Helgadottir, Saga Midtvedt, Benjamin Argun, Aykut Thalheim, Tobias Cichos, Frank Bo, Stefano Hubatsch, Lars Pineda, Jesus Manzo, Carlo Bachimanchi, Harshith Selander, Erik Homs-Corbera, Antoni Fränzl, Martin de Haan, Kevin Rivenson, Yair Korczak, Zofia Adiels, Caroline Beck Mijalkov, Mite Veréb, Dániel Chang, Yu-Wei Pereira, Joana B. Matuszewski, Damian Kylberg, Gustaf Sintorn, Ida-Maria Caicedo, Juan C. Cimini, Beth A. Bell, Muyinatu Lediju A. Saraiva, Bruno M. Jacquemet, Guillaume Henriques, Ricardo Ouyang, Wei Le, Trang Gómez-De-Mariscal, Estibaliz Sage, Daniel Muñoz-Barrutia, Arrate Lindqvist, Ebba Josefson Bergman, Johanna Department of Physics University of Gothenburg Gothenburg41296 Sweden Dept. IT and SciLifeLab Uppsala University Sweden Department of Electrical and Computer Engineering Boston University BostonMA02215 United States Department of Biomedical Engineering Boston University BostonMA02215 United States Görlitz Germany Department of Renal Medicine Division of Medicine University College London Royal Free Hospital Campus London United Kingdom Artificial Intelligence for Life Sciences CIC Dorset United Kingdom Roche Pharma International Informatics Roche Diagnostics GmbH Mannheim Germany Department of Electrical Engineering and Computer Sciences UC Berkeley United States Technische Universität Dresden Faculty of Computer Science Dresden Germany Max Planck Institute of Molecular Cell Biology and Genetics Center for Systems Biology Dresden Dresden Germany University of Maryland College Park United States Klosterneuburg3400 Austria School of Mathematics and Physics The University of Queensland Brisbane4072 Australia Australian Research Council Centre of Excellence for Engineered Quantum Systems The University of Queensland Brisbane4072 Australia Département d’Optique P. M. Duffieux Institut FEMTO-ST Université Franche-Comté CNRS UMR 6174 Besançon France Department of Electrical and Computer Engineering University of California Los Angeles Los AngelesCA United States Department of Information Technology Uppsala University Sweden Department of Biomedical Engineering Rensselaer Polytechnic Institute TroyNY12180 United States Elephas 1 Erdman Pl. Madison53705 United States University of Wisconsin–Madison Department of Medical Physics MadisonWI53705 United States Department of Molecular and Cellular Physiology Albany Medical College AlbanyNY12208 United States Research Laboratory of Electronics Electrical Engineering and Computer Science Massachusetts Institute of Technology BostonMA United States Center for Nanophase Materials Sciences Oak R

Through digital imaging, microscopy has evolved from primarily being a means for visual observation of life at the micro- and nano-scale, to a quantitative tool with ever-increasing resolution and throughput. Artificial intelligence, deep neural networks, and machine learning are all niche terms describing computational methods that have gained a pivotal role in microscopy-based research over the past decade. This Roadmap is written collectively by prominent researchers and encompasses selected aspects of how machine learning is applied to microscopy image data, with the aim of gaining scientific knowledge by improved image quality, automated detection, segmentation, classification and tracking of objects, and efficient merging of information from multiple imaging modalities. We aim to give the reader an overview of the key developments and an understanding of possibilities and limitations of machine learning for microscopy. It will be of interest to a wide cross-disciplinary audience in the physical sciences and life sciences. Copyright © 2023, The Authors. All rights reserved.

关键词： Image enhancement

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Framing image registration as a landmark detection problem for label-noise-aware task representation (HitR)

arXiv

引用

arXiv 2023年

作者： Waldmannstetter, Diana Ezhov, Ivan Wiestler, Benedikt Campi, Francesco Kukuljan, Ivan Ehrlich, Stefan Vinayahalingam, Shankeeth Baheti, Bhakti Chakrabarty, Satrajit Baid, Ujjwal Bakas, Spyridon Schwarting, Julian Metz, Marie Kirschke, Jan S. Rueckert, Daniel Heckemann, Rolf A. Piraud, Marie Menze, Bjoern H. Kofler, Florian Department of Computer Science TUM School of Computation Information and Technology Technical University of Munich Munich Germany Department of Quantitative Biomedicine University of Zurich Zurich Switzerland Department of Diagnostic and Interventional Neuroradiology School of Medicine Klinikum rechts der Isar Technical University of Munich Germany Helmholtz AI Helmholtz Munich Neuherberg Germany TranslaTUM - Central Institute for Translational Cancer Research Technical University of Munich Germany Healthcare Technologies SETLabs Research Munich Germany Department of Oral and Maxillofacial Surgery Radboud University Nijmegen Medical Centre Nijmegen Netherlands Division of Computational Pathology Department of Pathology and Laboratory Medicine School of Medicine Indiana University IndianapolisIN United States Department of Electrical and Systems Engineering Washington University in St.Louis St. LouisMO United States Artificial Intelligence in Healthcare and Medicine Technical University of Munich Munich Germany Department of Computing Imperial College London London United Kingdom Department of Medical Radiation Sciences University of Gothenburg Gothenburg Sweden

Accurate image registration is pivotal in bio-medical image analysis, where selecting suitable registration algorithms demands careful consideration. While numerous algorithms are available, the evaluation metrics to assess their performance have remained relatively static. This study addresses this challenge by introducing a novel evaluation metric termed Landmark Hit Rate (HitR), which focuses on the clinical relevance of image registration accuracy. Unlike traditional metrics such as Target Registration Error, which emphasize sub-resolution differences, HitR considers whether registration algorithms successfully position landmarks within defined confidence zones. This paradigm shift acknowledges the inherent annotation noise in medical images, allowing for more meaningful assessments. To equip HitR with label-noise-awareness, we propose defining these confidence zones based on an Inter-rater Variance analysis. Consequently, hit rate curves are computed for varying landmark zone sizes, enabling performance measurement for a task-specific level of accuracy. Our approach offers a more realistic and meaningful assessment of image registration algorithms, reflecting their suitability for clinical and biomedical applications. Copyright © 2023, The Authors. All rights reserved.

关键词： Medical imaging

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Measuring hand use in the home after cervical spinal cord injury using egocentric video

arXiv

引用

arXiv 2022年

作者： Bandini, Andrea Dousty, Mehdy Hitzig, Sander L. Craven, B. Catharine Kalsi-Ryan, Sukhvinder Zariffa, José KITE Research Institute Toronto Rehabilitation Institute University Health Network Canada The BioRobotics Institute Scuola Superiore Sant'Anna Pisa Italy Department of Excellence in Robotics and AI Scuola Superiore Sant'Anna Pisa Italy Institute of Biomedical Engineering University of Toronto TorontoON Canada Rehabilitation Sciences Institute Temerty Faculty of Medicine University of Toronto TorontoON Canada St. John's Rehab Research Program Sunnybrook Research Institute Sunnybrook Health Sciences Centre TorontoON Canada Department of Occupational Science & Occupational Therapy Temerty Faculty of Medicine University of Toronto TorontoON Canada Brain and Spinal Cord Rehabilitation Program Toronto Rehabilitation Institute University Health Network TorontoON Canada Division of Physical Medicine and Rehabilitation Department of Medicine Temerty Faculty of Medicine University of Toronto TorontoON Canada Department of Physical Therapy University of Toronto TorontoON Canada Edward S. Rogers Sr. Department of Electrical and Computer Engineering University of Toronto TorontoON Canada

Egocentric video has recently emerged as a potential solution for monitoring hand function in individuals living with tetraplegia in the community, especially for its ability to detect functional use in the home environment. The aim of this study was to develop and validate a wearable vision-based system for measuring hand use in the home among individuals living with tetraplegia. Several deep learning algorithms for detecting functional hand-object interactions were developed and compared. The most accurate algorithm was used to extract measures of hand function from 65 hours of unscripted video recorded at home by 20 participants with tetraplegia. These measures were: the percentage of interaction time over total recording time (Perc);the average duration of individual interactions (Dur);the number of interactions per hour (Num). To demonstrate the clinical validity of the technology, egocentric measures were correlated with validated clinical assessments of hand function and independence (Graded Redefined Assessment of Strength, Sensibility and Prehension - GRASSP, Upper Extremity Motor Score - UEMS, and Spinal Cord Independent Measure - SCIM). Hand-object interactions were automatically detected with a median F1-score of 0.80 (0.67-0.87). Our results demonstrated that higher UEMS and better prehension were related to greater time spent interacting, whereas higher SCIM and better hand sensation resulted in a higher number of interactions performed during the egocentric video recordings. For the first time, measures of hand function automatically estimated in an unconstrained environment in individuals with tetraplegia have been validated against internationally accepted measures of hand function. Future work will necessitate a formal evaluation of the reliability and responsiveness of the egocentric-based performance measures for hand use. © 2022, CC BY-NC-ND.

关键词： Video recording

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Identifying the best machine learning algorithms for brain tumor segmentation, progression assessment, and overall survival prediction in the BRATS challenge

arXiv

引用

arXiv 2018年

作者： Bakas, Spyridon Reyes, Mauricio Jakab, Andras Bauer, Stefan Rempfler, Markus Crimi, Alessandro Shinohara, Russell Takeshi Berger, Christoph Ha, Sung Min Rozycki, Martin Prastawa, Marcel Alberts, Esther Lipkova, Jana Freymann, John Kirby, Justin Bilello, Michel Fathallah-Shaykh, Hassan M. Wiest, Roland Kirschke, Jan Wiestler, Benedikt Colen, Rivka Kotrotsou, aikaterini Lamontagne, Pamela Marcus, Daniel Milchenko, Mikhail Nazeri, Arash Weber, Marc-Andr Mahajan, Abhishek Baid, Ujjwal Gerstner, Elizabeth Kwon, Dongjin Acharya, Gagan Agarwal, Manu Alam, Mahbubul Albiol, Alberto Albiol, Antonio Albiol, Francisco J. Alex, Varghese Allinson, Nigel Amorim, Pedro H.A. Amrutkar, Abhijit Anand, Ganesh Andermatt, Simon Arbel, Tal Arbelaez, Pablo Avery, Aaron Azmat, Muneeza Pranjal, B. Bai, Wenjia Banerjee, Subhashis Barth, Bill Batchelder, Thomas Batmanghelich, Kayhan Battistella, Enzo Beers, Andrew Belyaev, Mikhail Bendszus, Martin Benson, Eze Bernal, Jose Bharath, Halandur Nagaraja Biros, George Bisdas, Sotirios Brown, James Cabezas, Mariano Cao, Shilei Cardoso, Jorge M. Carver, Eric N. Casamitjana, Adri Castillo, Laura Silvana Cat, Marcel Cattin, Philippe Cérigues, Albert Chagas, Vinicius S. Chandra, Siddhartha Chang, Yi-Ju Chang, Shiyu Chang, Ken Chazalon, Joseph Chen, Shengcong Chen, Wei Chen, Jefferson W. Chen, Zhaolin Cheng, Kun Choudhury, Ahana Roy Chylla, Roger Clrigues, Albert Colleman, Steven Colmeiro, Ramiro German Rodriguez Combalia, Marc Costa, Anthony Cui, Xiaomeng Dai, Zhenzhen Dai, Lutao Daza, Laura Alexandra Deutsch, Eric Ding, Changxing Dong, Chao Dong, Shidu Dudzik, Wojciech Eaton-Rosen, Zach Egan, Gary Escudero, Guilherme Estienne, Tho Everson, Richard Fabrizio, Jonathan Fan, Yong Fang, Longwei Feng, Xue Ferrante, Enzo Fidon, Lucas Fischer, Martin French, Andrew P. Fridman, Naomi Fu, Huan Fuentes, David Gao, Yaozong Gates, Evan Gering, David Gholami, Amir Gierke, Willi Glocker, Ben Gong, Mingming Gonzlez-Vill, Sandra Grosges, T. Guan, Yuanfang Guo, Sheng Gupta, Sudeep Han, Woo-Sup Han, Il Song Harmuth, Ko Center for Biomedical Image Computing and Analytics University of Pennsylvania PhiladelphiaPA United States Department of Radiology Perelman School of Medicine University of Pennsylvania PhiladelphiaPA United States Department of Pathology and Laboratory Medicine Perelman School of Medicine University of Pennsylvania PhiladelphiaPA United States Institute for Surgical Technology and Biomechanics University of Bern Bern Switzerland Center for MR-Research University Children's Hospital Zurich Zurich Switzerland Support Centre for Advanced Neuroimaging Inselspital Institute for Diagnostic and Interventional Neuroradiology Bern University Hospital Bern Switzerland University Hospital of Zurich Zurich Switzerland Center for Clinical Epidemiology and Biostatistics University of Pennsylvania Philadelphia United States Image-Based Biomedical Modeling Group Technical University of Munich Munich Germany Icahn School of Medicine Mount Sinai Health System New YorkNY United States Leidos Biomedical Research Inc. Frederick National Laboratory for Cancer Research FrederickMD21701 United States Cancer Imaging Program National Cancer Institute National Institutes of Health BethesdaMD20814 United States Department of Neurology University of Alabama at Birmingham BirminghamAL United States Department of Diagnostic Radiology University of Texas MD Anderson Cancer Center HoustonTX United States Department of Psychology Washington University St. LouisMO United States Neuroimaging Informatics and Analysis Center Washington University St. LouisMO United States Department of Radiology Washington University St. LouisMO United States Institute of Diagnostic and Interventional Radiology Pediatric Radiology and Neuroradiology University Medical Center Rostock Ernst-Heydemann-Str. 6 Rostock18057 Germany Tata Memorial Centre Homi Bhabha National Institute Mumbai India Shri Guru Gobind Singhji Institute of Engineering and Technology Nanded India NVIDIA Santa Clara

Gliomas are the most common primary brain malignancies, with different degrees of aggressiveness, variable prognosis and various heterogeneous histologic sub-regions, i.e., peritumoral edematous/invaded tissue, necrotic core, active and non-enhancing core. This intrinsic heterogeneity is also portrayed in their radio-phenotype, as their sub-regions are depicted by varying intensity profiles disseminated across multi-parametric magnetic resonance imaging (mpMRI) scans, reflecting varying biological properties. Their heterogeneous shape, extent, and location are some of the factors that make these tumors difficult to resect, and in some cases inoperable. The amount of resected tumor is a factor also considered in longitudinal scans, when evaluating the apparent tumor for potential diagnosis of progression. Furthermore, there is mounting evidence that accurate segmentation of the various tumor sub-regions can offer the basis for quantitative image analysis towards prediction of patient overall survival. This study assesses the state-of-the-art machine learning (ml) methods used for brain tumor image analysis in mpMRI scans, during the last seven instances of the International Brain Tumor Segmentation (BraTS) challenge, i.e., 2012-2018. Specifically, we focus on i) evaluating segmentations of the various glioma sub-regions in pre-operative mpMRI scans, ii) assessing potential tumor progression by virtue of longitudinal growth of tumor sub-regions, beyond use of the RECIST/RANO criteria, and iii) predicting the overall survival from pre-operative mpMRI scans of patients that underwent gross total resection. Finally, we investigate the challenge of identifying the best ml algorithms for each of these tasks, considering that apart from being diverse on each instance of the challenge, the multi-institutional mpMRI BraTS dataset has also been a continuously evolving/growing dataset. Copyright © 2018, The Authors. All rights reserved.

关键词： Tumors

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Generating Approximate Ground States of Molecules Using Quantum Machine Learning

arXiv

引用

arXiv 2022年

作者： Ceroni, Jack Stetina, Torin F. Kieferová, Mária Marrero, Carlos Ortiz Arrazola, Juan Miguel Wiebe, Nathan Xanadu TorontoONM5G 2C8 Canada Department of Mathematics University of Toronto TorontoONM5S 3E1 Canada Simons Institute for the Theory of Computing BerkeleyCA94704 United States Berkeley Quantum Information and Computation Center University of California BerkeleyCA94720 United States Centre for Quantum Computation and Communication Technology Centre for Quantum Software and Information University of Technology SydneyNSW2007 Australia AI & Data Analytics Division Pacific Northwest National Laboratory RichlandWA99354 United States Department of Electrical & Computer Engineering North Carolina State University RaleighNC27607 United States Department of Computer Science University of Toronto ONM5S 1A1 Canada High Performance Computing Group Pacific Northwest National Laboratory RichlandWA99354 United States

The potential energy surface (PES) of molecules with respect to their nuclear positions is a primary tool in understanding chemical reactions from first principles. However, obtaining this information is complicated by the fact that sampling a large number of ground states over a high-dimensional PES can require a vast number of state preparations. In this work, we propose using a generative quantum machine learning model to prepare quantum states at arbitrary points on the PES. The model is trained using quantum data consisting of ground-state wavefunctions associated with different classical nuclear coordinates. Our approach uses a classical neural network to convert the nuclear coordinates of a molecule into quantum parameters of a variational quantum circuit. The model is trained using a fidelity loss function to optimize the neural network parameters. We show that gradient evaluation is efficient and numerically demonstrate our method’s ability to prepare wavefunctions on the PES of hydrogen chains, water, and beryllium hydride. In all cases, we find that a small number of training points are needed to achieve very high overlap with the groundstates in practice. From a theoretical perspective, we further prove limitations on these protocols by showing that if we were able to learn across an avoided crossing using a small number of samples, then we would be able to violate Grover’s lower bound. Additionally, we prove lower bounds on the amount of quantum data needed to learn a locally optimal neural network function using arguments from quantum Fisher information. This work further identifies that quantum chemistry can be an important use case for quantum machine learning. © 2022, CC BY.

关键词： Molecules

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