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MOCBOA:Multi-Objective Chef-Based Optimization Algorithm Using Hybrid Dominance Relations for Solving Engineering Design Problems

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computer Modeling in Engineering & sciences 2025年第4期143卷 967-1008页

作者： Nour Elhouda Chalabi Abdelouahab Attia Abdulaziz S.Almazyad Ali Wagdy Mohamed Frank Werner Pradeep Jangir Mohammad Shokouhifar Computer Science Department University of M’silaIchebiliaM’sila28000Algeria Computer ScienceDepartment Mohamed El Bachir El IbrahimiUniversity of Bordj BouArreridjBordj BouArreridj34000Algeria Department of Computer Engineering College of Computer and Information SciencesKing Saud UniversityRiyadh11543Saudi Arabia Operations Research Department Faculty of Graduate Studies for Statistical ResearchCairo UniversityGiza12613Egypt Applied Science Research Center Applied Science Private UniversityAmman11931Jordan Faculty of Mathematics Otto-von-Guericke UniversityMagdeburg39016Germany University Centre for Research and Development Chandigarh UniversityMohali140413India Department of Electrical and Computer Engineering Shahid Beheshti UniversityTehran14399Iran DTU AI and Data Science Hub(DAIDASH) Duy Tan UniversityDa Nang550000Vietnam

Multi-objective optimization is critical for problem-solving in engineering,economics,and *** study introduces the Multi-Objective Chef-Based Optimization Algorithm(MOCBOA),an upgraded version of the Chef-Based Optimization Algorithm(CBOA)that addresses distinct *** approach is unique in systematically examining four dominance relations—Pareto,Epsilon,Cone-epsilon,and Strengthened dominance—to evaluate their influence on sustaining solution variety and driving convergence toward the Pareto *** comparison investigation,which was conducted on fifty test problems from the CEC 2021 benchmark and applied to areas such as chemical engineering,mechanical design,and power systems,reveals that the dominance approach used has a considerable impact on the key optimization measures such as the hypervolume *** paper provides a solid foundation for determining themost effective dominance approach and significant insights for both theoretical research and practical applications in multi-objective optimization.

关键词： Multi-objective optimization chef-based optimization algorithm(CBOA) pareto dominance epsilon dominance cone-epsilon dominance strengthened dominance

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Optimal Transfer Learning for Missing Not-at-Random Matrix Completion

arXiv

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arXiv 2025年

作者： Jalan, Akhil Jedra, Yassir Mazumdar, Arya Mukherjee, Soumendu Sundar Sarkar, Purnamrita UT Austin United States MIT United States UC San Diego United States Indian Statistical Institute Kolkata India Department of Computer Science LIDS United States Halıcıoğlu Data Science Institute Department of Computer Science and Engineering United States Department of Statistics and Data Sciences

We study transfer learning for matrix completion in a Missing Not-at-Random (MNAR) setting that is motivated by biological problems. The target matrix Q has entire rows and columns missing, making estimation impossible without side information. To address this, we use a noisy and incomplete source matrix P, which relates to Q via a feature shift in latent space. We consider both the active and passive sampling of rows and columns. We establish minimax lower bounds for entrywise estimation error in each setting. Our computationally efficient estimation framework achieves this lower bound for the active setting, which leverages the source data to query the most informative rows and columns of Q. This avoids the need for incoherence assumptions required for rate optimality in the passive sampling setting. We demonstrate the effectiveness of our approach through comparisons with existing algorithms on real-world biological datasets. © 2025, CC BY.

关键词： Contrastive Learning

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Bayesian Inference for Non-Synchronously Observed Diffusions

arXiv

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arXiv 2025年

作者： Jasra, Ajay Kamatani, Kengo Wu, Amin School of Data Science The Chinese University of Hong Kong Shenzhen Shenzhen China Institute of Statistical Mathematics Tokyo190-0014 Japan Statistics Program Computer Electrical and Mathematical Sciences and Engineering Division King Abdullah University of Science and Technology Thuwal23955-6900 Saudi Arabia

We consider the problem of Bayesian inference for bi-variate data observed in time but with observation times which occur non-synchronously. In particular, this occurs in a wide variety of applications in finance, such as high-frequency trading or crude oil futures trading. We adopt a diffusion model for the data and formulate a Bayesian model with priors on unknown parameters along with a latent representation for the the so-called missing data. We then consider computational methodology to fit the model using Markov chain Monte Carlo (MCMC). We have to resort to time-discretization methods as the complete data likelihood is intractable and this can cause considerable issues for MCMC when the data are observed in low frequencies. In a high frequency observation frequencies we present a simple particle MCMC method based on an Euler–Maruyama time discretization, which can be enhanced using multilevel Monte Carlo (MLMC). In the low frequency observation regime we introduce a novel bridging representation of the posterior in continuous time to deal with the issues of MCMC in this case. This representation is discretized and fitted using MCMC and MLMC. We apply our methodology to real and simulated data to establish the efficacy of our methodology. © 2025, CC BY.

关键词： Crude oil

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BENCHMARKING COMMUNITY DRUG RESPONSE PREDICTION MODELS: dataSETS, MODELS, TOOLS, AND METRICS FOR CROSS-dataSET GENERALIZATION ANALYSIS

arXiv

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arXiv 2025年

作者： Partin, Alexander Vasanthakumari, Priyanka Narykov, Oleksandr Wilke, Andreas Koussa, Natasha Jones, Sara E. Zhu, Yitan Overbeek, Jamie C. Jain, Rajeev Fernando, Gayara Demini Sanchez-Villalobos, Cesar Garcia-Cardona, Cristina Mohd-Yusof, Jamaludin Chia, Nicholas Wozniak, Justin M. Ghosh, Souparno Pal, Ranadip Brettin, Thomas S. Weil, M. Ryan Stevens, Rick L. Division of Data Science and Learning Argonne National Laboratory LemontIL United States Frederick National Laboratory for Cancer Research Cancer Data Science Initiatives Cancer Research Technology Program FrederickMD United States Department of Statistics University of Nebraska–Lincoln LincolnNE United States Department of Electrical & Computer Engineering Texas Tech University LubbockTX United States Division of Computer Computational and Statistical Sciences Los Alamos National Laboratory Los AlamosNM United States Department of Computer Science The University of Chicago ChicagoIL United States

Deep learning (DL) and machine learning (ML) models have shown promise in drug response prediction (DRP), yet their ability to generalize across datasets remains an open question, raising concerns about their real-world applicability. Due to the lack of standardized benchmarking approaches, model evaluations and comparisons often rely on inconsistent datasets and evaluation criteria, making it difficult to assess true predictive capabilities. In this work, we introduce a benchmarking framework for evaluating cross-dataset prediction generalization in DRP models. Our framework incorporates five publicly available drug screening datasets, six standardized DRP models, and a scalable workflow for systematic evaluation. To assess model generalization, we introduce a set of evaluation metrics that quantify both absolute performance (e.g., predictive accuracy across datasets) and relative performance (e.g., performance drop compared to within-dataset results), enabling a more comprehensive assessment of model transferability. Our results reveal substantial performance drops when models are tested on unseen datasets, underscoring the importance of rigorous generalization assessments. While several models demonstrate relatively strong cross-dataset generalization, no single model consistently outperforms across all datasets. Furthermore, we identify CTRPv2 as the most effective source dataset for training, yielding higher generalization scores across target datasets. By sharing this standardized evaluation framework with the community, our study aims to establish a rigorous foundation for model comparison, and accelerate the development of robust DRP models for real-world applications. © 2025, CC BY.

关键词： Prediction models

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Biomedical data and AI

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science China Life sciences 2025年第5期68卷 1536-1540页

作者： Hao Xu Shibo Zhou Zefeng Zhu Vincenzo Vitelli Liangyi Chen Ziwei Dai Ning Yang Luhua Lai Shengyong Yang Sergey Ovchinnikov Zhuoran Qiao Sirui Liu Chen Song Jianfeng Pei Han Wen Jianfeng Feng Yaoyao Zhang Zhengwei Xie Yang-Yu Liu Zhiyuan Li Fulai Jin Hao Li Mohammad Lotfollahi Xuegong Zhang Ge Yang Shihua Zhang Ge Gao Pulin Li Qi Liu Jing-Dong Jackie Han Peking-Tsinghua Center for Life Sciences (CLS) Academy for Advanced Interdisciplinary StudiesPeking University Center for Quantitative Biology (CQB) Academy for Advanced Interdisciplinary StudiesPeking University Peking University-Tsinghua University-National Institute of Biological Sciences Joint Graduate Program Academy for Advanced Interdisciplinary StudiesPeking University Department of Physics University of Chicago School of Life Sciences Southern University of Science and Technology Peking University Chengdu Academy for Advanced Interdisciplinary Biotechnologies College of Chemistry and Molecular Engineering Peking University Department of Biotherapy Cancer Center and State Key Laboratory of BiotherapyWest China HospitalSichuan University Department of Biology Massachusetts Institute of Technology Lambic Therapeutics Inc. Changping Laboratory Al for Science Institute Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence Fudan University Department of Obstetrics and Gynecology West China Second University HospitalSichuan University Peking University International Cancer Institute and Peking University-Yunnan Baiyao International Medical Institute and State Key Laboratory of Natural and Biomimetic Drugs Department of Molecular and Cellular PharmacologySchool of Pharmaceutical SciencesPeking University Health Science CenterPeking University Channing Division of Network Medicine Department of MedicineBrigham and Women's Hospital and Harvard Medical School Center for Artificial Intelligence and Modeling the Carl R.Woese Institute for Genomic BiologyUniversity of Illinois Urbana-Champaign Department of Genetics and Genome Sciences School of Medicine and Department of Computer and Data Sciences and Department of Population and Quantitative Health SciencesCase Western Reserve University Department of Biochemistry and Biophysics University of California Sanger Institute Department of Automation Tsinghua University State Key Laboratory of Multimodal Artificial Intelligence Systems I

The development of artificial intelligence(AI) and the mining of biomedical data complement each other. From the direct use of computer vision results to analyze medical images for disease screening, to now integrating biological knowledge into models and even accelerating the development of new AI based on biological discoveries, the boundaries of both are constantly expanding, and their connections are becoming closer.

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Unbiased Parameter Estimation for Bayesian Inverse Problems

arXiv

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arXiv 2025年

作者： Chada, Neil K. Jasra, Ajay Maama, Mohamed Tempone, Raul Department of Mathematics City University of Hong Kong China School of Data Science The Chinese University of Hong Kong Shenzhen CN Shenzhen China Applied Mathematics and Computational Science Program Computer Electrical and Mathematical Sciences and Engineering Division King Abdullah University of Science and Technology Thuwal23955-6900 Saudi Arabia

In this paper we consider the estimation of unknown parameters in Bayesian inverse problems. In most cases of practical interest, there are several barriers to performing such estimation, This includes a numerical approximation of a solution of a differential equation and, even if exact solutions are available, an analytical intractability of the marginal likelihood and its associated gradient, which is used for parameter estimation. The focus of this article is to deliver unbiased estimates of the unknown parameters, that is, stochastic estimators that, in expectation, are equal to the maximizer of the marginal likelihood, and possess no numerical approximation error. Based upon the ideas of [4] we develop a new approach for unbiased parameter estimation for Bayesian inverse problems. We prove unbiasedness and establish numerically that the associated estimation procedure is faster than the current state-of-the-art methodology for this problem. We demonstrate the performance of our methodology on a range of problems which include a PDE and ODE. Copyright © 2025, The Authors. All rights reserved.

关键词： Markov processes

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Structural phase transitions between layered Indium Selenide for integrated photonic memory

arXiv

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arXiv 2025年

作者： Li, Tiantian Wang, Yong Li, Wei Mao, Dun Benmore, Chris J. Evangelista, Igor Xing, Huadan Li, Qiu Wang, Feifan Sivaraman, Ganesh Janotti, Anderson Law, Stephanie Gu, Tingyi Department of Electrical and Computer Engineering University of Delaware NewarkDE19716 United States Department of Materials Science and Engineering University of Delaware NewarkDE19716 United States Los Alamos National Laboratory Computer Computational and Statistical Sciences Division Los AlamosNM87545 United States X-ray Science Division Argonne National Laboratory LemontIL60439 United States Data Science and Learning Division Argonne National Laboratory LemontIL60439 United States

The primary mechanism of optical memoristive devices relies on the phase transitions between amorphous-crystalline states. The slow or energy hungry amorphous-crystalline transitions in optical phase-change materials are detrimental to the devices’ scalability and performance. Leveraging the integrated photonic platform, we demonstrate a single nanosecond pulse triggered nonvolatile and reversible switching between two layered structures of indium selenide (In2Se3). High resolution pair distribution function reveals the detailed atomistic transition pathways between the layered structures. With inter-layer ‘shear glide’ and isosymmetric phase transition, the switching between α- and β-structural states contain low re-configurational entropy, allowing reversible switching between layered structures. Broadband refractive index contrast, optical transparency, and volumetric effect in the crystalline-crystalline phase transition are experimentally characterized in molecular beam epitaxy-grown thin films and compared to ab-initial calculations. The nonlinear resonator transmission spectra measure incremental linear loss rate of 3.3 GHz introduced by 1.5 µm long In2Se3 covered layer, resulting from the combinations of material absorption and scattering. © 2025, CC BY.

关键词： Molecular beam epitaxy

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Improved LSTM hyperparameters alongside sentiment walk-forward validation for time series prediction

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Journal of Open Innovation: Technology, Market, and Complexity 2025年第1期11卷

作者： Wahyuddin, Eko Putra Caraka, Rezzy Eko Kurniawan, Robert Caesarendra, Wahyu Gio, Prana Ugiana Pardamean, Bens Department of Statistical Computing Politeknik Statistika STIS Jakarta 13330 Indonesia Statistics Indonesia (BPS) Jl. Dr Sutomo 6-8 Jakarta Indonesia School of Economics and Business Telkom University Bandung 40257 Indonesia Research Center for Data and Information Sciences Research Organization for Electronics and Informatics National Research and Innovation Agency (BRIN) Bandung 40135 Indonesia Faculty of Integrated Technologies Universiti Brunei Darussalam Gadong BE1410 Brunei Darussalam Department of Mathematics Universitas Sumatera Utara Medan 20155 Indonesia Bioinformatics and Data Science Research Centre Bina Nusantara University DKI Jakarta 11480 Indonesia Computer Science Department BINUS Graduate Program Master of Computer Science Program Bina Nusantara University DKI Jakarta 11480 Indonesia

This study aims to address the common issue of biased estimation errors in time series modeling by analyzing the error in locating ideal hyperparameters and defining appropriate validation methods. Specifically, it focuses on predicting the stock price of Bank Rakyat Indonesia using a combination of historical stock prices, technical indicators, exchange rates, and news sentiment data, while determining the optimal variables for deep learning models. Employing a deep learning-based Long-Short Term Memory (LSTM) model, the study optimizes hyperparameters alongside walk-forward validation for time series prediction. It explores different combinations of variables and adapts the sliding window approach to the context of the data. The results highlight the importance of optimizing hyperparameters and utilizing walk-forward validation for accurate time series prediction. The model incorporating historical stock prices and sentiment scores outperforms others, achieving an RMSE of 96.61 and MAE of 86.97. Incorporating sentiment scores reduces RMSE by 39.55 % compared to models using only historical stock prices, while adding technical indicators does not yield improvement. This study contributes to the field by addressing the issue of biased estimation errors in time series modeling, offering insights into the optimization of hyperparameters and validation methods for accurate predictions. It also underscores the significance of incorporating sentiment analysis alongside historical stock prices for improved forecasting accuracy. © 2024 The Authors

关键词： LSTM Sentiment analysis Stock price prediction Time series modeling Validation methods

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GAITGen: Disentangled Motion-Pathology Impaired Gait Generative Model – Bringing Motion Generation to the Clinical Domain

arXiv

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arXiv 2025年

作者： Adeli, Vida Mehraban, Soroush Mirmehdi, Majid Whone, Alan Filtjens, Benjamin Dadashzadeh, Amirhossein Fasano, Alfonso Iaboni, Andrea Taati, Babak University of Toronto Computer Science Department Canada Vector Institute Canada KITE Research Institute UHN Canada University of Toronto Institute of Biomedical Engineering Canada University of Bristol School of Computer Science United Kingdom University of Bristol Translational Health Science United Kingdom University of Toronto Data Sciences Institute Canada University of Toronto Department of Medicine Division of Neurology Canada Krembil Research Institute UHN Canada Edmond J. Safra Program in Parkinson’s Disease UHN Canada University of Toronto Department of Psychiatry Canada Centre for Mental Health UHN Canada

Gait analysis is crucial for the diagnosis and monitoring of movement disorders like Parkinson’s Disease. While computer vision models have shown potential for objectively evaluating parkinsonian gait, their effectiveness is limited by scarce clinical datasets and the challenge of collecting large and well-labelled data, impacting model accuracy and risk of bias. To address these gaps, we propose GAITGen, a novel framework that generates realistic gait sequences conditioned on specified pathology severity levels. GAITGen employs a Conditional Residual Vector Quantized Variational Autoencoder to learn disentangled representations of motion dynamics and pathology-specific factors, coupled with Mask and Residual Transformers for conditioned sequence generation. GAITGen generates realistic, diverse gait sequences across severity levels, enriching datasets and enabling large-scale model training in parkinsonian gait analysis. Experiments on our new PD-GaM (real) dataset demonstrate that GAITGen outperforms adapted state-of-the-art models in both reconstruction fidelity and generation quality, accurately capturing critical pathology-specific gait features. A clinical user study confirms the realism and clinical relevance of our generated sequences. Moreover, incorporating GAITGen-generated data into downstream tasks improves parkinsonian gait severity estimation, highlighting its potential for advancing clinical gait analysis. © 2025, CC BY-NC-SA.

关键词： Pathology

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A Consensus Privacy Metrics Framework for Synthetic data

arXiv

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arXiv 2025年

作者： Pilgram, Lisa Dankar, Fida K. Drechsler, Jörg Elliot, Mark Domingo-Ferrer, Josep Francis, Paul Kantarcioglu, Murat Kong, Linglong Malin, Bradley Muralidhar, Krishnamurty Myles, Puja Prasser, Fabian Raisaro, Jean Louis Yan, Chao El Emam, Khaled School of Epidemiology and Public Health University of Ottawa ON Canada CHEO Research Institute ON Canada Department of Nephrology and Medical Intensive Care Charité – Universitätsmedizin Berlin Berlin Germany Department for Statistical Methods Institute for Employment Research Nuernberg Germany Institute for Statistics Ludwig-Maximilians-Universität Munich Germany Joint Program in Survey Methodology University of Maryland United States The Cathie Marsh Institute Research School of Social Sciences University of Manchester Manchester United Kingdom Department of Computer Engineering and Mathematics Universitat Rovira i Virgili Catalonia Tarragona Spain Max Planck Institute for Software Systems Germany Department of Computer Science Virginia Tech United States Department of Mathematical and Statistical Sciences University of Alberta Alberta Canada Department of Biomedical Informatics Vanderbilt University Medical Center NashvilleTN United States Department of Biostatistics Vanderbilt University Medical Center NashvilleTN United States Department of Computer Science Vanderbilt University NashvilleTN United States Department of Marketing and Supply Chain Management University of Oklahoma Oklahoma United States Medicines and Healthcare products Regulatory Agency London United Kingdom Berlin Institute of Health at Charité Universitätsmedizin Berlin Medical Informatics Group Berlin Germany Biomedical Data Science Center University Hospital Lausanne Lausanne Switzerland

Synthetic data generation is one approach for sharing individual-level data. However, to meet legislative requirements, it is necessary to demonstrate that the individuals’ privacy is adequately protected. There is no consolidated standard for measuring privacy in synthetic data. Through an expert panel and consensus process, we developed a framework for evaluating privacy in synthetic data. Our findings indicate that current similarity metrics fail to measure identity disclosure, and their use is discouraged. For differentially private synthetic data, a privacy budget other than close to zero was not considered interpretable. There was consensus on the importance of membership and attribute disclosure, both of which involve inferring personal information about an individual without necessarily revealing their identity. The resultant framework provides precise recommendations for metrics that address these types of disclosures effectively. Our findings further present specific opportunities for future research that can help with widespread adoption of synthetic data. © 2025, CC BY.

关键词： Differential privacy

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