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Optimising knee injury detection with spatial attention and validating localisation ability

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arXiv 2021年

作者： Belton, Niamh Welaratne, Ivan Dahlan, Adil Hearne, Ronan T. Hagos, Misgina Tsighe Lawlor, Aonghus Curran, Kathleen M. Science Foundation Ireland Centre for Research Training in Machine Learning School of Medicine University College Dublin Department of Radiology Mater Misericordiae University Hospital Dublin Ireland School of Electronic Engineering University College Dublin School of Computer Science University College Dublin Insight Centre for Data Analytics University College Dublin Dublin Ireland

This work employs a pre-trained, multi-view Convolutional Neural Network (CNN) with a spatial attention block to optimise knee injury detection. An open-source Magnetic Resonance Imaging (MRI) data set with image-level labels was leveraged for this analysis. As MRI data is acquired from three planes, we compare our technique using data from a single-plane and multiple planes (multi-plane). For multi-plane, we investigate various methods of fusing the planes in the network. This analysis resulted in the novel 'MPFuseNet' network and state-of-the-art Area Under the Curve (AUC) scores for detecting Anterior Cruciate Ligament (ACL) tears and Abnormal MRIs, achieving AUC scores of 0.977 and 0.957 respectively. We then developed an objective metric, Penalised Localisation Accuracy (PLA), to validate the model's localisation ability. This metric compares binary masks generated from Grad-Cam output and the radiologist's annotations on a sample of MRIs. We also extracted explainability features in a model-agnostic approach that were then verified as clinically relevant by the radiologist. Copyright © 2021, The Authors. All rights reserved.

关键词： Magnetic resonance imaging

IoT-enabled social relationships meet artificial social intelligence

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arXiv 2021年

作者： Dhelim, Sahraoui Ning, Huansheng Farha, Fadi Chen, Liming Atzori, Luigi Daneshmand, Mahmoud The School of Computer and Communication Engineering University of Science and Technology Beijing Beijing100083 China Beijing Engineering Research Center for Cyberspace Data Analysis and Applications Beijing China The School of Computing Ulster University NewtownabbeyBT37 0QB United Kingdom The Department of Electrical and Electronic Engineering University of Cagliari piazza d'Armi Cagliari09123 Italy The Department of Business Intelligence and Analytics The Department of Computer Science Stevens Institute of Technology Hoboken United States

With the recent advances of the Internet of Things, and the increasing accessibility to ubiquitous computing resources and mobile devices, the prevalence of rich media contents, and the ensuing social, economic, and cultural changes, computing technology and applications have evolved quickly over the past decade. They now go beyond personal computing, facilitating collaboration and social interactions in general, causing a quick proliferation of social relationships among IoT entities. The increasing number of these relationships and their heterogeneous social features have led to computing and communication bottlenecks that prevent the IoT network from taking advantage of these relationships to improve the offered services and customize the delivered content, known as social relationships explosion. On the other hand, the quick advances in artificial intelligence applications in social computing have led to the emerging of a promising research field known as Artificial Social Intelligence (ASI) that has the potential to tackle the social relationships explosion problem. This paper discusses the role of IoT in social relationships management, the problem of social relationships explosion in IoT, and reviews the proposed solutions using ASI, including social-oriented machine-learning and deep-learning techniques. Copyright © 2021, The Authors. All rights reserved.

关键词： Internet of things

Automatic Diagnosis of Myocarditis Disease in Cardiac MRI Modality using Deep Transformers and Explainable Artificial Intelligence

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arXiv 2022年

作者： Jafari, Mahboobeh Shoeibi, Afshin Ghassemi, Navid Heras, Jonathan Ling, Sai Ho Beheshti, Amin Zhang, Yu-Dong Wang, Shui-Hua Alizadehsani, Roohallah Gorriz, Juan M. Acharya, U. Rajendra Rokny, Hamid Alinejad Internship in BioMedical Machine Learning Lab The Graduate School of Biomedical Engineering UNSW Sydney SydneyNSW2052 Australia Data Science and Computational Intelligence Institute University of Granada Spain Department of Mathematics and Computer Science University of La Rioja La Rioja Spain Australia Data Analytics Lab Department of Computing Macquarie University SydneyNSW2109 Australia School of Computing and Mathematical Sciences University of Leicester Leicester United Kingdom Deakin University VIC3217 Australia Department of Psychiatry University of Cambridge United Kingdom School of Mathematics Physics and Computing University of Southern Queensland Springfield Australia BioMedical Machine Learning Lab The Graduate School of Biomedical Engineering UNSW Sydney SydneyNSW2052 Australia UNSW Data Science Hub The University of New South Wales SydneyNSW2052 Australia Research Centre Macquarie University Sydney2109 Australia

Myocarditis is a significant cardiovascular disease (CVD) that poses a threat to the health of many individuals by causing damage to the myocardium. The occurrence of microbes and viruses, including the likes of HIV, plays a crucial role in the development of myocarditis disease (MCD). The images produced during cardiac magnetic resonance imaging (CMRI) scans are low contrast, which can make it challenging to diagnose cardiovascular diseases. In other hand, checking numerous CMRI slices for each CVD patient can be a challenging task for medical doctors. To overcome the existing challenges, researchers have suggested the use of artificial intelligence (AI)-based computer-aided diagnosis systems (CADS). The presented paper outlines a CADS for the detection of MCD from CMR images, utilizing deep learning (DL) methods. The proposed CADS consists of several steps, including dataset, preprocessing, feature extraction, classification, and post-processing. First, the Z-Alizadeh dataset was selected for the experiments. Subsequently, the CMR images underwent various preprocessing steps, including denoising, resizing, as well as data augmentation (DA) via CutMix and MixUp techniques. In the following, the most current deep pre-trained and transformer models are used for feature extraction and classification on the CMR images. The findings of our study reveal that transformer models exhibit superior performance in detecting MCD as opposed to pre-trained architectures. In terms of DL architectures, the Turbulence Neural Transformer (TNT) model exhibited impressive accuracy, reaching 99.73% utilizing a 10-fold cross-validation approach. Additionally, to pinpoint areas of suspicion for MCD in CMRI images, the Explainable-based Grad Cam method was employed. © 2022, CC BY-NC-ND.

关键词： Diseases

database Intrusion Detection Systems (DIDs): Insider threat detection via behavioural-based Anomaly detection systems - A Brief Survey of concepts and approaches

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arXiv 2020年

作者： Khan, Muhammad Imran Foley, Simon N. O'Sullivan, Barry Insight Centre for Data Analytics School of Computer Science and Information Technology University College Cork Ireland Department of Information Security and Communication Technology Norwegian University of Science and Technology Gjøvik Norway

One of the data security and privacy concerns is of insider threats, where legitimate users of the system abuse the access privileges they hold. The insider threat to data security means that an insider steals or leaks sensitive personal information. database Intrusion detection systems, specifically behavioural-based database intrusion detection systems, have been shown effective in detecting insider attacks. This paper presents background concepts on database intrusion detection systems in the context of detecting insider threats and examines existing approaches in the literature on detecting malicious accesses by an insider to database Management Systems (DBMS). Copyright © 2020, The Authors. All rights reserved.

关键词： Relational database systems

Ensemble Deep Learning Architectures for Automated Diagnosis of Pulmonary Tuberculosis using Chest X-ray

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TechRxiv

TechRxiv 2022年

作者： Yagis, Ekin Pinpo, Nichapat Jacutprakart, Janadhip Abolghasemi, Vahid Andritsch, Jarutas Chaichulee, Sitthichok Cid, Yashin Dicente Seco de Herrera, Alba G. Ingviya, Thammasin The School of Computer Science and Electronic Engineering University of Essex United Kingdom The Division of Digital Innovation and Data Analytics Faculty of Medicine Prince of Songkla University Thailand Faculty of Business Law and Digital Technologies Solent University United Kingdom The Department of Biomedical Sciences and Biomedical Engineering Faculty of Medicine Prince of Songkla University Thailand Roche Diagnostics Sant Cugat del Vallès Spain The Department of Family and Preventive Medicine Faculty of Medicine Prince of Songkla University Thailand University College London United Kingdom

Tuberculosis (TB) is still a serious public health concern across the world, causing 1.4 million deaths each year. However, there has been a scarcity of radiological interpretation skills in many TB-infected locations, which may cause poor diagnosis rates and poor patient outcomes. A cost-effective and efficient automated technique might help screening evaluations in underprivileged countries and provide early illness diagnosis. In this work, we proposed a deep ensemble learning framework that integrates multisource data of two deep learning-based techniques for the automated diagnosis of TB. The integrated model framework has been tested on two publicly available datasets and one private dataset. While both proposed deep learning-based automated detection systems have shown high accuracy and specificity compared to state-of-the-art, the ensemble method significantly improved prediction accuracy in detecting chest radiographs with active pulmonary TB from a multi-ethnic patient cohort. Extensive experiments were used to validate the methodology, and the results were superior to previous approaches, showing the method’s practicality for application in the real world. By integrating supervised prediction and unsupervised representation, the ensemble method accurately classified TB with the area under the receiver operating characteristic (AUROC) up to 0.98 using chest radiography outperforming the other tested classifiers and achieving state-of-the-art. The methodology and findings provide a viable route for more accurate and quicker TB detection, especially in low and middle-income nations. © 2022, CC BY.

关键词： Cost effectiveness

The EMory BrEast imaging dataset (EMBED): A Racially Diverse, Granular dataset of 3.5M Screening and Diagnostic Mammograms

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arXiv 2022年

作者： Jeong, Jiwoong J. Vey, Brianna L. Reddy, Ananth Kim, Thomas Santos, Thiago Correa, Ramon Dutt, Raman Mosunjac, Marina Oprea-Ilies, Gabriela Smith, Geoffrey Woo, Minjae McAdams, Christopher R. Newell, Mary S. Banerjee, Imon Gichoya, Judy Trivedi, Hari Department of Computer Science Emory University 201 Dowman Drive AtlantaGA30322 United States Department of Radiology Emory University 1364 Clifton Rd AtlantaGA30322 United States College of Computing Georgia Institute of Technology 801 Atlantic Dr NW AtlantaGA30332 United States Department of Pathology Emory University 1364 Clifton Rd AtlantaGA30322 United States School of Data Science and Analytics Kennesaw State University 1000 Chastain Road KennesawGA30144 United States Department of Biomedical Informatics Emory University 100 Woodruff Circle AtlantaGA30322 United States

Developing and validating artificial intelligence models in medical imaging requires datasets that are large, granular, and diverse. To date, the majority of publicly available breast imaging datasets lack in one or more of these areas. Models trained on these data may therefore underperform on patient populations or pathologies that have not previously been encountered. The EMory BrEast imaging dataset (EMBED) addresses these gaps by providing 3650,000 2D and DBT screening and diagnostic mammograms for 116,000 women divided equally between White and African American patients. The dataset also contains 40,000 annotated lesions linked to structured imaging descriptors and 61 ground truth pathologic outcomes grouped into six severity classes. Our goal is to share this dataset with research partners to aid in development and validation of breast AI models that will serve all patients fairly and help decrease bias in medical AI. © 2022, CC BY.

关键词： Mammography

Privacy interpretation of behavioural-based anomaly detection approaches

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arXiv 2020年

作者： Khan, Muhammad Imran Foley, Simon N. O’Sullivan, Barry Insight Centre for Data Analytics School of Computer Science and Information Technology University College Cork Ireland Department of Information Security and Communication Technology Norwegian University of Science and Technology Gjøvik Norway

This paper proposes the notion of ‘Privacy-Anomaly Detection’ and considers the question of whether behavioural-based anomaly detection approaches can have a privacy semantic interpretation and whether the detected anomalies can be related to the conventional (formal) definitions of privacy semantics such as k-anonymity. The idea is to learn user’s past querying behaviour in terms of privacy and then identifying deviations from past behaviour in order to detect privacy violations. Privacy attacks, violations of formal privacy definition, based on a sequence of SQL queries (query correlations) are also considered in the paper and it is shown that interactive querying settings are vulnerable to privacy attacks based on query sequences. Investigation on whether these types of privacy attacks can potentially manifest themselves as anomalies, specifically as privacy-anomalies was carried out. It is shown that in this paper that behavioural-based anomaly detection approaches have the potential to detect privacy attacks based on query sequences (violation of formal privacy definition) as privacy-anomalies. Copyright © 2020, The Authors. All rights reserved.

关键词： Anomaly detection

On Aggregation in Ensembles of Multilabel Classifiers

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arXiv 2020年

作者： Nguyen, Vu-Linh Hüllermeier, Eyke Rapp, Michael Mencía, Eneldo Loza Fürnkranz, Johannes Heinz Nixdorf Institute Department of Computer Science Paderborn University Germany Knowledge Engineering Group TU Darmstadt Germany Computational Data Analytics Group JKU Linz Austria

While a variety of ensemble methods for multilabel classification have been proposed in the literature, the question of how to aggregate the predictions of the individual members of the ensemble has received little attention so far. In this paper, we introduce a formal framework of ensemble multilabel classification, in which we distinguish two principal approaches: "predict then combine" (PTC), where the ensemble members first make loss minimizing predictions which are subsequently combined, and "combine then predict" (CTP), which first aggregates information such as marginal label probabilities from the individual ensemble members, and then derives a prediction from this aggregation. While both approaches generalize voting techniques commonly used for multilabel ensembles, they allow to explicitly take the target performance measure into account. Therefore, concrete instantiations of CTP and PTC can be tailored to concrete loss functions. Experimentally, we show that standard voting techniques are indeed outperformed by suitable instantiations of CTP and PTC, and provide some evidence that CTP performs well for decomposable loss functions, whereas PTC is the better choice for non-decomposable losses. Copyright © 2020, The Authors. All rights reserved.

关键词： Forecasting

Feature Extraction and Classification from Planetary science datasets enabled by Machine Learning

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Feature Extraction and Classification from Planetary Science...

IEEE Conference on Aerospace

作者： Conor A. Nixon Zachary Yahn Ethan Duncan Ian Neidel Alyssa C. Mills Benoît Seignovert Andrew Larsen Kathryn Gansler Charles Liles Catherine C. Walker Douglas M. Trent John Santerre Planetary Systems Laboratory NASA Goddard Space Flight Center Greenbelt MD Computer Science Department University of Virginia Charlottesville VA School of Information University of California Berkeley Berkeley CA Yale University Timothy Dwight College New Haven CT Geosciences Department Baylor University Waco TX Nantes Université Laboratoire De Planétologie Et Géosciences Nantes France Business Intelligence Division Inntopia Stowe VT Department of Geology University of Maryland College Park MD NASA Langley Research Center Center Operations Directorate Virginia Department of Applied Ocean Physics and Engineering Woods Hole Oceanographic Institution Massachusetts OCIO Information Data & Analytics Services SAIC | East-2 NASA Langley Research Center Virginia

In this paper we present two examples of recent investigations that we have undertaken, applying Machine Learning (ML) neural networks (NN) to image datasets from outer planet missions to achieve feature recognition. Our first investigation was to recognize ice blocks (also known as rafts, plates, polygons) in the chaos regions of fractured ice on Europa. We used a transfer learning approach, adding and training new layers to an industry-standard Mask R-CNN (Region-based Convolutional Neural Network) to recognize labeled blocks in a training dataset. Subsequently, the updated model was tested against a new dataset, achieving 68% precision. In a different application, we applied the Mask R-CNN to recognize clouds on Titan, again through updated training followed by testing against new data, with a precision of 95% over 369 images. We evaluate the relative successes of our techniques and suggest how training and recognition could be further improved. The new approaches we have used for planetary datasets can further be applied to similar recognition tasks on other planets, including Earth. For imagery of outer planets in particular, the technique holds the possibility of greatly reducing the volume of returned data, via onboard identification of the most interesting image subsets, or by returning only differential data (images where changes have occurred) greatly enhancing the information content of the final data stream.

关键词： Training Earth Image recognition Transfer learning Streaming media Feature extraction Ice