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Brittle failure of β- and τ-boron: Amorphization under high pressure

Physical Review B 2017年第6期95卷 064108-064108页

作者： Qi An Sergey I. Morozov Department of Chemical and Materials Engineering University of Nevada Reno Reno Nevada 89557 USA Nevada Institute for Sustainability University of Nevada Reno Reno Nevada 89557 USA Department of Computer Simulation and Nanotechnology South Ural State University Chelyabinsk 454080 Russia

Element boron tends to form an icosahedral motif involving 26 electrons, leading to intriguing bonding conditions which complicate understating the structural variations under high pressure. Here we used density function theory (DFT) to examine the mechanical response of β- and recent discovered τ-boron to shear along the most plausible slip system. We found that the failure mechanism of β−B106 is fracturing a B28 triply fused icosahedral cluster without destroying a regular B12 icosahedron, while the failure of τ−B106 arises from the disintegration of a B28 cluster and one nearby icosahedron. The failure of β−B106 leads to a B12-embedded amorphous structure which transforms to the second amorphous phase with a fully deconstructed icosahedra at 81 GPa. The second amorphous phase retains the deconstructed icosahedra at ambient conditions which is different from the normal amorphous boron containing regular icosahedra which are bonded randomly to each other. The second amorphous phase is more stable than β−B106 above 90 GPa, which explains the previous experiments on pressure-induced amorphization. In addition, forming the second highest density amorphous phase likely causes the brittle failure of β-B and related materials.

关键词： Fracture Material failure Mechanical & acoustical properties Mechanical deformation

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Direct and indirect band gaps in Ge under biaxial tensile strain investigated by photoluminescence and photoreflectance studies

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Physical Review B 2018年第19期97卷 195304-195304页

作者： D. Saladukha M. B. Clavel F. Murphy-Armando G. Greene-Diniz M. Grüning M. K. Hudait T. J. Ochalski Centre for Advanced Photonics and Process Analysis Cork Institute of Technology Cork T12 P928 Ireland Tyndall National Institute Lee Maltings Dyke Parade Cork T12 R5CP Ireland Advanced Devices & Sustainable Energy Laboratory (ADSEL) Bradley Department of Electrical and Computer Engineering Virginia Tech Blacksburg Virginia 24061 USA Atomistic Simulation Centre School of Mathematics and Physics Queen's University Belfast University Road Belfast BT7 1NN Northern Ireland United Kingdom

Germanium is an indirect semiconductor which attracts particular interest as an electronics and photonics material due to low indirect-to-direct band separation. In this work we bend the bands of Ge by means of biaxial tensile strain in order to achieve a direct band gap. Strain is applied by growth of Ge on a lattice mismatched InGaAs buffer layer with variable In content. Band structure is studied by photoluminescence and photoreflectance, giving the indirect and direct bands of the material. Obtained experimental energy band values are compared with a k·p simulation. Photoreflectance spectra are also simulated and compared with the experiment. The obtained results indicate direct band structure obtained for a Ge sample with 1.94% strain applied, with preferable Γ valley to heavy hole transition.

关键词： Band gap Electronic structure Luminescence Semiconductors

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Noise subtraction from KAGRA O3GK data using Independent Component Analysis

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Classical and Quantum Gravity 2023年第8期40卷 085015-085015页

作者： H Abe T Akutsu M Ando A Araya N Aritomi H Asada Y Aso S Bae Y Bae R Bajpai K Cannon Z Cao E Capocasa M Chan C Chen D Chen K Chen Y Chen C-Y Chiang Y-K Chu S Eguchi M Eisenmann Y Enomoto R Flaminio H K Fong Y Fujii Y Fujikawa Y Fujimoto I Fukunaga D Gao G-G Ge S Ha I P W Hadiputrawan S Haino W-B Han K Hasegawa K Hattori H Hayakawa K Hayama Y Himemoto N Hirata C Hirose T-C Ho B-H Hsieh H-F Hsieh C Hsiung H-Y Huang P Huang Y-C Huang Y-J Huang D C Y Hui S Ide K Inayoshi Y Inoue K Ito Y Itoh C Jeon H-B Jin K Jung P Jung K Kaihotsu T Kajita M Kakizaki M Kamiizumi N Kanda T Kato K Kawaguchi C Kim J Kim J C Kim Y-M Kim N Kimura T Kiyota Y Kobayashi K Kohri K Kokeyama A K H Kong N Koyama C Kozakai J Kume Y Kuromiya S Kuroyanagi K Kwak E Lee H W Lee R Lee M Leonardi K L Li P Li L C -C Lin C-Y Lin E T Lin F-K Lin F-L Lin H L Lin G C Liu L-W Luo M Ma’arif E Majorana Y Michimura N Mio O Miyakawa K Miyo S Miyoki Y Mori S Morisaki N Morisue Y Moriwaki K Nagano K Nakamura H Nakano M Nakano Y Nakayama T Narikawa L Naticchioni L Nguyen Quynh W-T Ni T Nishimoto A Nishizawa S Nozaki Y Obayashi W Ogaki J J Oh K Oh M Ohashi T Ohashi M Ohkawa H Ohta Y Okutani K Oohara S Oshino S Otabe K-C Pan A Parisi J Park F E Pe na Arellano S Saha Y Saito K Sakai T Sawada Y Sekiguchi L Shao Y Shikano H Shimizu K Shimode H Shinkai T Shishido A Shoda K Somiya I Song R Sugimoto J Suresh T Suzuki H Tagoshi H Takahashi R Takahashi S Takano H Takeda M Takeda K Tanaka T Tanaka S Tanioka A Taruya T Tomaru T Tomura L Trozzo T Tsang J-S Tsao S Tsuchida T Tsutsui D Tuyenbayev N Uchikata T Uchiyama A Ueda T Uehara K Ueno G Ueshima T Ushiba M H P M van Putten J Wang T Washimi C Wu H Wu T Yamada K Yamamoto T Yamamoto K Yamashita R Yamazaki Y Yang S Yeh J Yokoyama T Yokozawa T Yoshioka H Yuzurihara S Zeidler M Zhan H Zhang Y Zhao Z-H Zhu The KAGRA Collaboration Graduate School of Science Tokyo Institute of Technology Meguro-ku Tokyo 152-8551 Japan Gravitational Wave Science Project National Astronomical Observatory of Japan (NAOJ) Mitaka City Tokyo 181-8588 Japan Advanced Technology Center National Astronomical Observatory of Japan (NAOJ) Mitaka City Tokyo 181-8588 Japan Department of Physics The University of Tokyo Bunkyo-ku Tokyo 113-0033 Japan Research Center for the Early Universe (RESCEU) The University of Tokyo Bunkyo-ku Tokyo 113-0033 Japan Earthquake Research Institute The University of Tokyo Bunkyo-ku Tokyo 113-0032 Japan Department of Mathematics and Physics Gravitational Wave Science Project Hirosaki University Hirosaki City Aomori 036-8561 Japan Kamioka Branch National Astronomical Observatory of Japan (NAOJ) Kamioka-cho Hida City Gifu 506-1205 Japan The Graduate University for Advanced Studies (SOKENDAI) Mitaka City Tokyo 181-8588 Japan Korea Institute of Science and Technology Information (KISTI) Yuseong-gu Daejeon 34141 Republic of Korea National Institute for Mathematical Sciences Yuseong-gu Daejeon 34047 Republic of Korea School of High Energy Accelerator Science The Graduate University for Advanced Studies (SOKENDAI) Tsukuba City Ibaraki 305-0801 Japan Department of Astronomy Beijing Normal University Beijing 100875 People’s Republic of China Department of Applied Physics Fukuoka University Jonan Fukuoka City Fukuoka 814-0180 Japan Department of Physics Tamkang University Danshui Dist. New Taipei City 25137 Taiwan Department of Physics and Institute of Astronomy National Tsing Hua University Hsinchu 30013 Taiwan Department of Physics Center for High Energy and High Field Physics National Central University Zhongli District Taoyuan City 32001 Taiwan Department of Physics National Tsing Hua University Hsinchu 30013 Taiwan Institute of Physics Academia Sinica Nankang Taipei 11529 Taiwan Univ. Grenoble Alpes Laboratoire d’Annecy de Physique des Particules (LAPP) Université Savoie M

During April 7–21 2020, KAGRA conducted its first scientific observation in conjunction with the GEO600 detector. The dominant noise sources during this run were found to be suspension control noise in the low-frequency range and acoustic noise in the mid-frequency range. In this study, we show that their contributions in the observational data can be reduced by a signal processing method called independent component analysis (ICA). The model of ICA is extended from that studied in the initial KAGRA data analysis to account for frequency dependence, while the linearity and stationarity of the coupling between the interferometer and the noise sources are still assumed. We identify optimal witness sensors in the application of ICA, leading to successful mitigation of these two dominant contributions. We also analyze the stability of the transfer functions for the entire two weeks of data to investigate the applicability of the proposed subtraction method in gravitational wave searches.

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Development of a Wearable Device for Sign Language Recognition

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Journal of Physics: Conference Series 2018年第1期1019卷

作者： Radzi Ambar Chan Kar Fai Mohd Helmy Abd Wahab Muhammad Mahadi Abdul Jamil Ahmad Alabqari Ma'radzi Computational Signal Imaging and Intelligence (CSII) Research Group Department of Computer Engineering Faculty of Electrical and Electronic Engineering Universiti Tun Hussein Onn Malaysia Biomedical Modelling and Simulation (BIOMEMS) Research Group Department of Electronic Engineering Faculty of Electrical and Electronic Engineering Universiti Tun Hussein Onn Malaysia

This project describes the development of a sign language translator that converts sign language into speech and text by using wearable device. The glove-based device is able to read the movements of a single arm and five (5) fingers. The device consists of five (5) flex sensors to detect finger bending, and an accelerometer to detect arm motions. Based on the combination of these sensors, the device is able to identify any particular gestures that correspond to words and phrases in American Sign Language (ASL), and translate it into speech via a speaker and text which is displayed on an LCD screen. This article explains mainly on the hardware design of the device. Based on preliminary experimental results on nine (9) simple sign languages, the device demonstrated an average value of 0.74 s to convert a sign language into speech and text, which demonstrate the usefulness of the proposed device.

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Multiplex model of mental lexicon reveals explosive learning in humans

arXiv

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arXiv 2017年

作者： Stella, Massimo Beckage, Nicole M. Brede, Markus De Domenico, Manlio Institute for Complex Systems Simulation University of Southampton United Kingdom Fondazione Bruno Kessler Italy Department of Electrical Engineering and Computer Science University of Kansas United States School of Computer Science and Mathematics Universitat Rovira i Virgili Spain

Word similarities affect language acquisition and use in a multi-relational way barely accounted for in the literature. We propose a multiplex network representation of this mental lexicon of word similarities as a natural framework for investigating large-scale cognitive patterns. Our representation accounts for semantic, taxonomic, and phonological interactions and it identifies a cluster of words which are used with greater frequency, are identified, memorised, and learned more easily, and have more meanings than expected at random. This cluster emerges around age 7 through an explosive transition not reproduced by null models. We relate this explosive emergence to polysemy - redundancy in word meanings. Results indicate that the word cluster acts as a core for the lexicon, increasing both lexical navigability and robustness to linguistic degradation. Our findings provide quantitative confirmation of existing conjectures about core structure in the mental lexicon and the importance of integrating multi-relational word-word interactions in psycholinguistic frameworks. Copyright © 2017, The Authors. All rights reserved.

关键词： Explosives

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Overview of KAGRA: Detector design and construction history

arXiv

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arXiv 2020年

作者： Akutsu, T. Ando, M. Arai, K. Arai, Y. Araki, S. Araya, A. Aritomi, N. Aso, Y. Bae, S. Bae, Y. Baiotti, L. Bajpai, R. Barton, M.A. Cannon, K. Capocasa, E. Chan, M. Chen, C. Chen, K. Chen, Y. Chu, H. Chu, Y.-K. Eguchi, S. Enomoto, Y. Flaminio, R. Fujii, Y. Fukunaga, M. Fukushima, M. Ge, G. Hagiwara, A. Haino, S. Hasegawa, K. Hayakawa, H. Hayama, K. Himemoto, Y. Hiranuma, Y. Hirata, N. Hirose, E. Hong, Z. Hsieh, B.H. Huang, C.-Z. Huang, P. Huang, Y. Ikenoue, B. Imam, S. Inayoshi, K. Inoue, Y. Ioka, K. Itoh, Y. Izumi, K. Jung, K. Jung, P. Kajita, T. Kamiizumi, M. Kanda, N. Kang, G. Kawaguchi, K. Kawai, N. Kawasaki, T. Kim, C. Kim, J.C. Kim, W.S. Kim, Y.-M. Kimura, N. Kita, N. Kitazawa, H. Kojima, Y. Kokeyama, K. Komori, K. Kong, A.K.H. Kotake, K. Kozakai, C. Kozu, R. Kumar, R. Kume, J. Kuo, C. Kuo, H.-S. Kuroyanagi, S. Kusayanagi, K. Kwak, K. Lee, H.K. Lee, H.W. Lee, R. Leonardi, M. Lin, C. Lin, C.-Y. Lin, F.-L. Liu, G.C. Luo, L. Marchio, M. Michimura, Y. Mio, N. Miyakawa, O. Miyamoto, A. Miyazaki, Y. Miyo, K. Miyoki, S. Morisaki, S. Moriwaki, Y. Nagano, K. Nagano, S. Nakamura, K. Nakano, H. Nakano, M. Nakashima, R. Narikawa, T. Negishi, R. Ni, W.-T. Nishizawa, A. Obuchi, Y. Ogaki, W. Oh, J.J. Oh, S.H. Ohashi, M. Ohishi, N. Ohkawa, M. Okutomi, K. Oohara, K. Ooi, C.P. Oshino, S. Pan, K. Pang, H. Park, J. Peña Arellano, F.E. Pinto, I. Sago, N. Saito, S. Saito, Y. Sakai, K. Sakai, Y. Sakuno, Y. Sato, S. Sato, T. Sawada, T. Sekiguchi, T. Sekiguchi, Y. Shibagaki, S. Shimizu, R. Shimoda, T. Shimode, K. Shinkai, H. Shishido, T. Shoda, A. Somiya, K. Son, E.J. Sotani, H. Sugimoto, R. Suzuki, T. Suzuki, T. Tagoshi, H. Takahashi, H. Takahashi, R. Takamori, A. Takano, S. Takeda, H. Takeda, M. Tanaka, H. Tanaka, K. Tanaka, K. Tanaka, T. Tanaka, T. Tanioka, S. Tapia San Martin, E.N. Telada, S. Tomaru, T. Tomigami, Y. Tomura, T. Mitaka City Tokyo181-8588 Japan Japan Department of Physics University of Tokyo Bunkyo-ku Tokyo113-0033 Japan University of Tokyo Bunkyo-ku Tokyo113-0033 Japan KAGRA Observatory University of Tokyo Kashiwa City Chiba277-8582 Japan Tsukuba City Ibaraki305-0801 Japan Earthquake Research Institute University of Tokyo Bunkyo-ku Tokyo113-0032 Japan Kamioka-cho Hida City Gifu506-1205 Japan Mitaka City Tokyo181-8588 Japan Yuseong-gu Daejeon34141 Korea Republic of National Institute for Mathematical Sciences Daejeon34047 Korea Republic of Department of Earth and Space Science Graduate School of Science Osaka University Toyonaka City Osaka560-0043 Japan Tsukuba City Ibaraki305-0801 Japan Department of Applied Physics Fukuoka University Jonan Fukuoka City Fukuoka814-0180 Japan Department of Physics Tamkang University Danshui Dist. New Taipei City25137 Taiwan Department of Physics and Institute of Astronomy National Tsing Hua University Hsinchu30013 Taiwan Department of Physics Center for High Energy and High Field Physics National Central University Zhongli District Taoyuan City32001 Taiwan Institute of Physics Academia Sinica Nankang Taipei11529 Taiwan Université Savoie Mont Blanc CNRS/IN2P3 AnnecyF-74941 France Department of Astronomy University of Tokyo Mitaka City Tokyo181-8588 Japan Chinese Academy of Sciences Xiaohongshan Wuhan430071 China Tsukuba City Ibaraki305-0801 Japan KAGRA Observatory University of Tokyo Kamioka-cho Hida City Gifu506-1205 Japan College of Industrial Technology Nihon University Narashino City Chiba275-8575 Japan Graduate School of Science and Technology Niigata University Nishi-ku Niigata City Niigata950-2181 Japan Department of Physics National Taiwan Normal University sec. 4 Taipei116 Taiwan University of Tokyo Kashiwa City Chiba277-8582 Japan Kavli Institute for Astronomy and Astrophysics Peking University China Kyoto University Sakyou-ku Kyot

KAGRA is a newly built gravitational-wave telescope, a laser interferometer comprising arms with a length of 3 km, located in Kamioka, Gifu, Japan. KAGRA was constructed under the ground and it is operated using cryogenic mirrors that help in reducing the seismic and thermal noise. Both technologies are expected to provide directions for the future of gravitational-wave telescopes. In 2019, KAGRA finished all installations with the designed configuration, which we call the baseline KAGRA. In this occasion, we present an overview of the baseline KAGRA from various viewpoints in a series of of articles. In this article, we introduce the design configurations of KAGRA with its historical background. Copyright © 2020, The Authors. All rights reserved.

关键词： Laser interferometry

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Is the winner really the best? A critical analysis of common research practice in biomedical image analysis competitions

arXiv

引用

arXiv 2018年

作者： Maier-Hein, Lena Eisenmann, Matthias Reinke, Annika Onogur, Sinan Stankovic, Marko Scholz, Patrick Arbel, Tal Bogunovic, Hrvoje Bradley, Andrew P. Carass, Aaron Carolin Feldmann Frangi, Alejandro F. Ful, Peter M. van Ginneken, Bram Hanbury, Allan Honauer, Katrin Kozubek, Michal Landman, Bennett A. Marz, Keno Maier, Oskar Maier-Hein, Klaus Menze, Bjoern H. Müller, Henning Neher, Peter F. Niessen, Wiro Rajpoot, Nasir Sharp, Gregory C. Sirinukunwattana, Korsuk Speidel, Stefanie Stock, Christian Stoyanov, Danail Taha, Abdel Aziz van der Sommen, Fons Wang, Ching-Wei Weber, Marc-André Zheng, Guoyan Jannin, Pierre Kopp-Schneider, Annette Heidelberg Germany Centre for Intelligent Machines McGill University MontrealQC Canada Christian Doppler Laboratory for Ophthalmic Image Analysis Department of Ophthalmology Medical University Vienna Vienna Austria Science and Engineering Faculty Queensland University of Technology BrisbaneQLD Australia Department of Electrical and Computer Engineering Department of Computer Science Johns Hopkins University Baltimore United States CISTIB Centre for Computational Imaging and Simulation Technologies in Biomedicine University of Sheffield Sheffield United Kingdom Department of Radiology and Nuclear Medicine Medical Image Analysis Radboud University Center Nijmegen Netherlands Institute of Information Systems Engineering TU Wien Vienna Austria Heidelberg University Heidelberg Germany Centre for Biomedical Image Analysis Masaryk University Brno Czech Republic Electrical Engineering Vanderbilt University NashvilleTN United States Institute of Medical Informatics Universität zu Lübeck Lübeck Germany Heidelberg Germany Institute for Advanced Studies Department of Informatics Technical University of Munich Munich Germany Information System Institute HES-SO Sierre Switzerland Departments of Radiology Nuclear Medicine and Medical Informatics Erasmus MC Rotterdam Netherlands Department of Computer Science University of Warwick Coventry United Kingdom Department of Radiation Oncology Massachusetts General Hospital BostonMA United States Institute of Biomedical Engineering University of Oxford Oxford United Kingdom National Center for Tumor Diseases Dresden Dresden Germany Heidelberg Germany Department of Computer Science University College London London United Kingdom Data Science Studio Research Studios Austria FG Vienna Austria Department of Electrical Engineering Eindhoven University of Technology Eindhoven Netherlands AIExplore NTUST Center of Computer Vision and Medical Imaging Graduate Institute of Biomedical Engineering National Ta

International challenges have become the standard for validation of biomedical image analysis methods. Given their scientific impact, it is surprising that a critical analysis of common practices related to the organization of challenges has not yet been performed. In this paper, we present a comprehensive analysis of biomedical image analysis challenges conducted up to now. We demonstrate the importance of challenges and show that the lack of quality control has critical consequences. First, reproducibility and interpretation of the results is often hampered as only a fraction of relevant information is typically provided. Second, the rank of an algorithm is generally not robust to a number of variables such as the test data used for validation, the ranking scheme applied and the observers that make the reference annotations. To overcome these problems, we recommend best practice guidelines and define open research questions to be addressed in the future. Copyright © 2018, The Authors. All rights reserved.

关键词： Quality control

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Nonlocal and Gradient Theories of Piezoelectric Nanoplates

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Procedia engineering 2017年 190卷 178-185页

作者： Jan Sladek Vladimir Sladek Jozef Kasala Ernian Pan Institute of Construction and Architecture Slovak Academy of Sciences 84503 Bratislava Slovakia Faculty of Special Technology Alexander Dubcek University of Trencin 91150 Trencin Slovakia Computer Modeling and Simulation Group Department of Civil Engineering University of Akron Akron OH 44325-3905 USA

Classical continuum models are unable to describe the size effect in nano/micro structures, even though this effect is observed experimentally. Therefore, modified continuum models are frequently applied for the investigation of nanomechanics due to their computational efficiency and capability of providing accurate results which are comparable to the atomistic models. In this paper, the Mindlin plate is extended to the piezoelectric nanoplate with nonlocal and gradient theories for size effect. The governing equations for bending moments, normal and shear stresses are derived via the Hamilton‘s principle. Differences between the two theories are described.

关键词： Nonlocal gradient elasticity Mindlin plate Hamilton‘s principle size effect

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Overview of KAGRA : Data transfer and management

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Progress of Theoretical and Experimental Physics 2023年第10期2023卷

作者： Akutsu, T Ando, M Arai, K Arai, Y Araki, S Araya, A Aritomi, N Asada, H Aso, Y Bae, S Bae, Y Baiotti, L Bajpai, R Barton, M A Cannon, K Cao, Z Capocasa, E Chan, M Chen, C Chen, K Chen, Y Chiang, C-Y Chu, H Chu, Y-K Eguchi, S Enomoto, Y Flaminio, R Fujii, Y Fujikawa, Y Fukunaga, M Fukushima, M Gao, D Ge, G Ha, S Hagiwara, A Haino, S Han, W-B Hasegawa, K Hattori, K Hayakawa, H Hayama, K Himemoto, Y Hiranuma, Y Hirata, N Hirose, E Hong, Z Hsieh, B Huang, G-Z Huang, H-Y Huang, P Huang, Y-C Huang, Y Hui, D C Y Ide, S Ikenoue, B Imam, S Inayoshi, K Inoue, Y Ioka, K Ito, K Itoh, Y Izumi, K Jeon, C Jin, H-B Jung, K Jung, P Kaihotsu, K Kajita, T Kakizaki, M Kamiizumi, M Kanda, N Kang, G Kawaguchi, K Kawai, N Kawasaki, T Kim, C Kim, J Kim, J C Kim, W S Kim, Y-M Kimura, N Kita, N Kitazawa, H Kobayashi, Y Kojima, Y Kokeyama, K Komori, K Kong, A K H Kotake, K Kozakai, C Kozu, R Kumar, R Kume, J Kuo, C Kuo, H-S Kuromiya, Y Kuroyanagi, S Kusayanagi, K Kwak, K Lee, H K Lee, H W Lee, R Leonardi, M Li, K L Lin, L C-C Lin, C-Y Lin, F-K Lin, F-L Lin, H L Liu, G C Luo, L-W Majorana, E Marchio, M Michimura, Y Mio, N Miyakawa, O Miyamoto, A Miyazaki, Y Miyo, K Miyoki, S Mori, Y Morisaki, S Moriwaki, Y Nagano, K Nagano, S Nakamura, K Nakano, H Nakano, M Nakashima, R Nakayama, Y Narikawa, T Naticchioni, L Negishi, R Quynh, L Nguyen Ni, W-T Nishizawa, A Nozaki, S Obuchi, Y Ogaki, W Oh, J J Oh, K Oh, S H Ohashi, M Ohashi, T Ohishi, N Ohkawa, M Ohta, H Okutani, Y Okutomi, K Oohara, K Ooi, C Oshino, S Otabe, S Pan, K Pang, H Parisi, A Park, J Arellano, F E Peña Pinto, I Sago, N Saito, S Saito, Y Sakai, K Sakai, Y Sakuno, Y Sasaki, Y Sato, S Sato, T Sawada, T Sekiguchi, T Sekiguchi, Y Shao, L Shibagaki, S Shimizu, R Shimoda, T Shimode, K Shinkai, H Shishido, T Shoda, A Somiya, K Son, E J Sotani, H Sugimoto, R Suresh, J Suzuki, T Tagoshi, H Takahashi, H Takahashi, R Takamori, A Takano, S Takeda, H Takeda, M Tanaka, H Tanaka, K Tanaka, T Tanioka, S Martin, E N Tapia San Telada, S Tomaru, T Tomigami, Y Tomura, T Travasso, F Trozzo, L Tsang, T Ts Gravitational Wave Science Project National Astronomical Observatory of Japan (NAOJ) 2-21-1 Osawa Mitaka City Tokyo 181-8588 Japan Advanced Technology Center National Astronomical Observatory of Japan (NAOJ) 2-21-1 Osawa Mitaka City Tokyo 181-8588 Japan Department of Physics The University of Tokyo 7-3-1 Hongo Bunkyo-ku Tokyo 113-0033 Japan Research Center for the Early Universe (RESCEU) The University of Tokyo 7-3-1 Hongo Bunkyo-ku Tokyo 113-0033 Japan Institute for Cosmic Ray Research (ICRR) KAGRA Observatory The University of Tokyo 5-1-5 Kashiwa-no-Ha Kashiwa City Chiba 277-8582 Japan Accelerator Laboratory High Energy Accelerator Research Organization (KEK) 1-1 Oho Tsukuba City Ibaraki 305-0801 Japan Earthquake Research Institute The University of Tokyo 1-1-1 Yayoi Bunkyo-ku Tokyo 113-0032 Japan Department of Mathematics and Physics Hirosaki University 3 Bunkyo-cho Hirosaki City Aomori 036-8561 Japan Kamioka Branch National Astronomical Observatory of Japan (NAOJ) 238 Higashi-Mozumi Kamioka-cho Hida City Gifu 506-1205 Japan The Graduate University for Advanced Studies (SOKENDAI) 2-21-1 Osawa Mitaka City Tokyo 181-8588 Japan Korea Institute of Science and Technology Information (KISTI) 245 Daehak-ro Yuseong-gu Daejeon 34141 Korea National Institute for Mathematical Sciences 70 Yuseong-daero 1689 Beon-gil Yuseong-gu Daejeon 34047 Korea International College Osaka University 1-1 Machikaneyama-cho Toyonaka City Osaka 560-0043 Japan School of High Energy Accelerator Science The Graduate University for Advanced Studies (SOKENDAI) 1-1 Oho Tsukuba City Ibaraki 305-0801 Japan Department of Astronomy Beijing Normal University No. 19 Xinjiekou Street Beijing 100875 China Department of Applied Physics Fukuoka University 8-19-1 Nanakuma Jonan Fukuoka City Fukuoka 814-0180 Japan Department of Physics Tamkang University No. 151 Yingzhuan Rd. Danshui Dist. New Taipei City 25137 Taiwan Department of Physics and Institute of Astronomy Nation

KAGRA is a newly built gravitational wave observatory, a laser interferometer with a 3 km arm length, located in Kamioka, Gifu prefecture, Japan. In this article, we describe the KAGRA data management system, i.e., recording of data, transfer from the KAGRA experiment site to computing resources, as well as data distribution to tier sites, including international sites in Taiwan and Korea. The amount of KAGRA data exceeded 1.0 PiB and increased by about 1.5 TB per day during operation in 2020. Our system has succeeded in data management, and has achieved performance that can withstand observations after 2023, that is, a transfer rate of 20 MB s-1or more and file storage of sufficient capacity for petabyte class. We also discuss the sharing of data between the global gravitational-wave detector network with other experiments, namely LIGO and Virgo. The latency, which consists of calculation of calibrated strain data and transfer time within the global network, is very important from the view of multi-messenger astronomy using gravitational waves. Real-time calbrated data delivered from the KAGRA detector site and other detectors to our computing system arrive with about 4–15 seconds of latency. These latencies are sufficiently short compared to the time taken for gravitational wave event search computations. We also established a high-latency exchange of offline calibrated data that was aggregated with a better accuracy compared with real-time data.

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Multivariate Covariance using Principal Component Analysis for Reconstruction of Bidirected Gene Regulatory Networks

Multivariate Covariance using Principal Component Analysis f...

引用

Frontiers of Information Technology (FIT)

作者： Mehrosh Khalid Sharifullah Khan Jamil Ahmad Muhammad Shaheryar School of Electrical Engineering and Computer Science (SEECS) National University of Sciences and Technology (NUST) Islamabad Pakistan Research Center for Modeling and Simulation (RCMS) National University of Sciences and Technology Islamabad Pakistan Department of Computer Science Capital University of Science and Technology (CUST) Islamabad Pakistan

Gene Regulatory Networks (GRNs) visualize the dynamic behavior of genetic components and their complex interactions. Reconstructing GRNs from gene expression data is in practice using multiple approaches. These approaches result in symmetrical and diagonal gene interaction matrices. However, they cannot predict all kinds of regulatory network motifs between gene pairs, such as activation, inhibition and self regulations. The proposed approach applies multivariate covariances and Principal Component Analysis (PCA) to identify asymmetric and non-diagonal gene interactions. The proposed approach generated bidirected GRNs holding all kinds of regulatory interactions. Moreover, the identified gene regulatory interactions have been verified from the literature.

关键词： Gene expression Covariance matrices Symmetric matrices Principal component analysis Reverse engineering Proteins

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